Wall clock time and date at job start Sat Apr 11 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37363 * 125.83398 * 2 1 4 4 N 1.29403 * 108.82760 * 180.02562 * 3 2 1 5 5 N 1.40165 * 108.14300 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34947 * 180.26289 * 5 4 3 7 7 C 1.50700 * 109.47259 * 269.69565 * 6 5 4 8 8 O 1.21280 * 119.99914 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62921 * 359.71993 * 9 7 6 11 11 C 1.53624 * 108.54260 * 126.37129 * 10 9 7 12 12 C 1.53041 * 109.24350 * 54.85146 * 11 10 9 13 13 C 1.53040 * 109.53762 * 298.51141 * 12 11 10 14 14 C 1.53008 * 109.49636 * 181.31490 * 13 12 11 15 15 O 1.42900 * 109.46774 * 180.16574 * 14 13 12 16 16 N 1.46492 * 109.52529 * 301.39772 * 13 12 11 17 17 C 1.36939 * 119.99904 * 179.85377 * 16 13 12 18 18 H 1.08007 * 120.00122 * 0.02562 * 17 16 13 19 19 C 1.38814 * 120.00338 * 179.97438 * 17 16 13 20 20 N 1.31626 * 119.99710 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00489 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47193 * 59.99760 * 21 19 17 23 23 H 1.48496 * 109.47407 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47288 * 300.00090 * 21 19 17 25 25 C 1.46927 * 120.62589 * 179.97438 * 9 7 6 26 26 C 1.34817 * 125.83261 * 180.02562 * 2 1 3 27 27 O 1.21816 * 126.30167 * 359.94546 * 26 2 1 28 28 H 1.09001 * 109.47299 * 269.96106 * 1 2 3 29 29 H 1.08996 * 109.47112 * 29.95979 * 1 2 3 30 30 H 1.09003 * 109.47197 * 149.95922 * 1 2 3 31 31 H 1.07992 * 125.58543 * 0.06297 * 3 2 1 32 32 H 1.09002 * 109.47386 * 29.69280 * 6 5 4 33 33 H 1.08999 * 109.47208 * 149.69098 * 6 5 4 34 34 H 1.09006 * 109.58349 * 246.19810 * 10 9 7 35 35 H 1.08993 * 109.58746 * 6.62542 * 10 9 7 36 36 H 1.09007 * 109.63019 * 294.86564 * 11 10 9 37 37 H 1.08998 * 109.43030 * 174.72287 * 11 10 9 38 38 H 1.08999 * 109.46245 * 178.49228 * 12 11 10 39 39 H 1.09004 * 109.44553 * 58.52771 * 12 11 10 40 40 H 1.09005 * 109.47024 * 300.16403 * 14 13 12 41 41 H 1.08994 * 109.46739 * 60.16055 * 14 13 12 42 42 H 0.96706 * 113.99225 * 180.02562 * 15 14 13 43 43 H 0.96997 * 120.00653 * 359.85542 * 16 13 12 44 44 H 0.97000 * 119.99993 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.58986 * 353.37423 * 25 9 7 46 46 H 1.09004 * 109.58270 * 113.65945 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5110 0.0046 7 6 5.1432 -1.8069 -1.4145 8 8 4.5000 -1.3569 -2.3389 9 7 6.2264 -2.5717 -1.6562 10 6 7.0191 -3.1188 -0.5467 11 6 7.1385 -4.6388 -0.7346 12 6 7.7139 -4.9319 -2.1222 13 6 6.7672 -4.3872 -3.1942 14 6 7.3270 -4.7095 -4.5813 15 8 6.4445 -4.1974 -5.5818 16 7 5.4483 -5.0067 -3.0432 17 6 4.4313 -4.6683 -3.8955 18 1 4.6017 -3.9451 -4.6794 19 6 3.1816 -5.2556 -3.7528 20 7 2.9744 -6.1381 -2.7985 21 14 1.7946 -4.7947 -4.9159 22 1 2.1879 -5.1224 -6.3098 23 1 0.5717 -5.5555 -4.5541 24 1 1.5212 -3.3391 -4.8080 25 6 6.6400 -2.8694 -3.0342 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0001 28 1 -0.3634 -0.0007 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 1.9250 2.1373 0.0010 32 1 5.5409 -0.9911 0.5170 33 1 4.5145 -2.4453 0.5224 34 1 8.0118 -2.6684 -0.5500 35 1 6.5213 -2.9041 0.3988 36 1 6.1537 -5.0974 -0.6449 37 1 7.8016 -5.0475 0.0279 38 1 7.8251 -6.0087 -2.2492 39 1 8.6877 -4.4521 -2.2199 40 1 8.3088 -4.2494 -4.6927 41 1 7.4170 -5.7898 -4.6946 42 1 6.7372 -4.3661 -6.4879 43 1 5.2953 -5.6564 -2.3395 44 1 2.1010 -6.5483 -2.6985 45 1 5.8920 -2.4900 -3.7303 46 1 7.6012 -2.3969 -3.2374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724907136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:32 Heat of formation + Delta-G solvation = 4.392390 kcal Electronic energy + Delta-G solvation = -32053.286329 eV Core-core repulsion = 27788.859763 eV Total energy + Delta-G solvation = -4264.426566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18674 -39.77117 -37.73717 -36.92673 -35.70757 -35.00278 -33.76342 -32.22797 -31.64504 -30.94175 -28.72806 -28.15256 -26.91591 -25.29853 -24.76391 -23.38874 -22.50761 -21.66502 -21.17512 -19.43405 -18.25631 -17.46477 -17.32449 -16.94575 -16.16338 -16.11235 -15.98578 -15.58148 -15.24621 -14.88306 -14.50642 -14.31082 -14.10461 -13.81463 -13.51989 -13.45246 -13.14515 -12.95123 -12.77130 -12.73681 -12.29537 -12.26404 -12.01444 -11.93840 -11.71715 -11.45353 -11.12687 -10.76203 -10.61873 -10.55737 -10.40056 -10.24577 -10.11748 -9.98524 -9.65794 -9.47668 -9.19272 -8.90853 -8.69799 -8.28384 -7.99342 -6.70381 -5.45988 -2.71129 1.85659 2.09368 2.96800 3.15062 3.26342 3.61445 3.65644 3.69924 3.75064 4.53927 4.77101 4.78408 4.85543 4.90294 5.02908 5.09374 5.19028 5.23997 5.26785 5.48258 5.49050 5.50105 5.54609 5.68220 5.69628 5.82429 5.91999 5.96541 5.97822 6.07538 6.15092 6.22753 6.28166 6.30970 6.43417 6.65177 6.68303 6.84682 6.96021 7.16043 7.78432 7.95271 8.25343 8.33462 8.42818 8.71729 8.77984 9.85552 10.32784 10.68024 11.77639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005250 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.796844 B = 5331.747204 C = 6863.326532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.564 5.564 3 C 0.250 3.750 4 N -0.277 5.277 5 N -0.436 5.436 6 C 0.147 3.853 7 C 0.504 3.496 8 O -0.516 6.516 9 N -0.593 5.593 10 C 0.109 3.891 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.188 3.812 14 C 0.076 3.924 15 O -0.540 6.540 16 N -0.701 5.701 17 C -0.202 4.202 18 H 0.089 0.911 19 C -0.019 4.019 20 N -0.942 5.942 21 Si 0.902 3.098 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.290 1.290 25 C 0.113 3.887 26 C 0.649 3.351 27 O -0.533 6.533 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.228 0.772 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.039 0.961 42 H 0.353 0.647 43 H 0.381 0.619 44 H 0.249 0.751 45 H 0.102 0.898 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 12.724 8.934 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.294 5.294 3 C -0.050 4.050 4 N -0.098 5.098 5 N -0.257 5.257 6 C 0.021 3.979 7 C 0.289 3.711 8 O -0.390 6.390 9 N -0.327 5.327 10 C -0.014 4.014 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.094 3.906 14 C -0.005 4.005 15 O -0.342 6.342 16 N -0.342 5.342 17 C -0.333 4.333 18 H 0.106 0.894 19 C -0.213 4.213 20 N -0.592 5.592 21 Si 0.735 3.265 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.217 1.217 25 C -0.011 4.011 26 C 0.348 3.652 27 O -0.403 6.403 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.244 0.756 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.058 0.942 42 H 0.198 0.802 43 H 0.216 0.784 44 H 0.059 0.941 45 H 0.120 0.880 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.108 12.611 8.851 16.967 hybrid contribution -1.284 -0.481 -0.970 1.680 sum 5.824 12.129 7.881 15.593 Atomic orbital electron populations 1.21774 0.74472 1.04792 1.03095 1.45842 1.08699 1.06701 1.68149 1.25778 0.85953 0.94613 0.98610 1.76845 1.18292 0.92026 1.22675 1.48172 1.05558 1.02735 1.69214 1.21257 0.85154 0.94767 0.96676 1.20514 0.80415 0.79184 0.90944 1.90719 1.51632 1.51277 1.45342 1.47715 1.27550 1.49986 1.07428 1.21775 0.95547 0.94633 0.89489 1.21949 1.02967 0.95321 0.96871 1.21609 0.97791 1.01255 0.94593 1.19936 0.88063 0.91800 0.90757 1.22767 0.90538 0.96769 0.90434 1.86897 1.49800 1.81200 1.16343 1.42384 1.05074 1.49015 1.37709 1.19394 0.88555 1.18220 1.07107 0.89366 1.24632 0.97586 1.00038 0.99019 1.69624 1.22407 1.32522 1.34656 0.86310 0.82282 0.77633 0.80289 1.21804 1.22336 1.21677 1.22097 0.99204 0.97428 0.82399 1.16716 0.81963 0.85120 0.81359 1.91193 1.77234 1.14951 1.56932 0.91092 0.89573 0.89363 0.75598 0.86611 0.86103 0.91654 0.90712 0.89902 0.91362 0.91494 0.92001 0.95917 0.94231 0.80248 0.78395 0.94135 0.87963 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 11.05 59.84 0.66 1.67 16 2 N -0.56 -8.08 3.14 -130.11 -0.41 -8.49 16 3 C 0.25 2.86 12.66 -89.11 -1.13 1.73 16 4 N -0.28 -4.18 12.53 29.87 0.37 -3.80 16 5 N -0.44 -7.90 3.11 -66.31 -0.21 -8.11 16 6 C 0.15 2.44 5.21 -5.19 -0.03 2.41 16 7 C 0.50 10.45 7.77 -10.98 -0.09 10.36 16 8 O -0.52 -13.31 15.84 5.56 0.09 -13.22 16 9 N -0.59 -10.79 2.88 -172.52 -0.50 -11.28 16 10 C 0.11 1.44 6.37 -3.49 -0.02 1.42 16 11 C -0.13 -1.87 5.93 -26.39 -0.16 -2.03 16 12 C -0.11 -1.72 4.76 -26.69 -0.13 -1.84 16 13 C 0.19 3.65 0.68 -131.72 -0.09 3.56 16 14 C 0.08 1.36 6.08 37.16 0.23 1.59 16 15 O -0.54 -10.78 10.11 -35.23 -0.36 -11.14 16 16 N -0.70 -17.64 4.75 -47.14 -0.22 -17.86 16 17 C -0.20 -5.93 8.21 -15.06 -0.12 -6.05 16 18 H 0.09 2.68 5.28 -52.48 -0.28 2.41 16 19 C -0.02 -0.59 5.50 -17.43 -0.10 -0.69 16 20 N -0.94 -30.62 13.06 55.49 0.72 -29.90 16 21 Si 0.90 25.80 29.55 -169.99 -5.02 20.77 16 22 H -0.29 -8.04 7.11 56.52 0.40 -7.63 16 23 H -0.30 -8.48 7.11 56.52 0.40 -8.08 16 24 H -0.29 -8.55 7.11 56.52 0.40 -8.15 16 25 C 0.11 2.23 4.84 -3.73 -0.02 2.21 16 26 C 0.65 12.94 8.60 -86.73 -0.75 12.19 16 27 O -0.53 -13.15 17.72 5.09 0.09 -13.06 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.23 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.12 1.40 7.93 -51.93 -0.41 0.99 16 33 H 0.12 1.97 7.67 -51.93 -0.40 1.57 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 36 H 0.08 1.48 6.75 -51.93 -0.35 1.13 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.35 5.23 9.12 45.56 0.42 5.65 16 43 H 0.38 10.27 6.43 -40.82 -0.26 10.00 16 44 H 0.25 8.04 8.31 -40.82 -0.34 7.70 16 45 H 0.10 2.52 5.69 -51.93 -0.30 2.22 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 374.20 15.07 5.64 5.64 Total: -1.00 -44.72 374.20 -7.20 -51.92 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.67 Total: 12.00 kcal Atomic # 6 Polarization: 28.25 SS G_CDS: -1.73 Total: 26.52 kcal Atomic # 7 Polarization: -79.20 SS G_CDS: -0.24 Total: -79.44 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.18 Total: -37.42 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.02 Total: 20.77 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -44.72 -7.20 -51.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724907136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.315 kcal (2) G-P(sol) polarization free energy of solvation -44.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds