Wall clock time and date at job start Sat Apr 11 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37363 * 125.83398 * 2 1 4 4 N 1.29403 * 108.82760 * 180.02562 * 3 2 1 5 5 N 1.40165 * 108.14300 * 359.97438 * 4 3 2 6 6 C 1.46501 * 126.34947 * 180.26289 * 5 4 3 7 7 C 1.50700 * 109.47259 * 269.69565 * 6 5 4 8 8 O 1.21280 * 119.99914 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99841 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62921 * 359.71993 * 9 7 6 11 11 C 1.53624 * 108.54260 * 126.37129 * 10 9 7 12 12 C 1.53041 * 109.24350 * 54.85146 * 11 10 9 13 13 C 1.53040 * 109.53762 * 298.51141 * 12 11 10 14 14 C 1.53008 * 109.49636 * 181.31490 * 13 12 11 15 15 O 1.42900 * 109.46774 * 180.16574 * 14 13 12 16 16 N 1.46492 * 109.52529 * 301.39772 * 13 12 11 17 17 C 1.36939 * 119.99904 * 179.85377 * 16 13 12 18 18 H 1.08007 * 120.00122 * 0.02562 * 17 16 13 19 19 C 1.38814 * 120.00338 * 179.97438 * 17 16 13 20 20 N 1.31626 * 119.99710 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00489 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47193 * 59.99760 * 21 19 17 23 23 H 1.48496 * 109.47407 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47288 * 300.00090 * 21 19 17 25 25 C 1.46927 * 120.62589 * 179.97438 * 9 7 6 26 26 C 1.34817 * 125.83261 * 180.02562 * 2 1 3 27 27 O 1.21816 * 126.30167 * 359.94546 * 26 2 1 28 28 H 1.09001 * 109.47299 * 269.96106 * 1 2 3 29 29 H 1.08996 * 109.47112 * 29.95979 * 1 2 3 30 30 H 1.09003 * 109.47197 * 149.95922 * 1 2 3 31 31 H 1.07992 * 125.58543 * 0.06297 * 3 2 1 32 32 H 1.09002 * 109.47386 * 29.69280 * 6 5 4 33 33 H 1.08999 * 109.47208 * 149.69098 * 6 5 4 34 34 H 1.09006 * 109.58349 * 246.19810 * 10 9 7 35 35 H 1.08993 * 109.58746 * 6.62542 * 10 9 7 36 36 H 1.09007 * 109.63019 * 294.86564 * 11 10 9 37 37 H 1.08998 * 109.43030 * 174.72287 * 11 10 9 38 38 H 1.08999 * 109.46245 * 178.49228 * 12 11 10 39 39 H 1.09004 * 109.44553 * 58.52771 * 12 11 10 40 40 H 1.09005 * 109.47024 * 300.16403 * 14 13 12 41 41 H 1.08994 * 109.46739 * 60.16055 * 14 13 12 42 42 H 0.96706 * 113.99225 * 180.02562 * 15 14 13 43 43 H 0.96997 * 120.00653 * 359.85542 * 16 13 12 44 44 H 0.97000 * 119.99993 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.58986 * 353.37423 * 25 9 7 46 46 H 1.09004 * 109.58270 * 113.65945 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5066 0.7352 -0.0005 5 7 3.5344 -0.6662 -0.0003 6 6 4.7313 -1.5110 0.0046 7 6 5.1432 -1.8069 -1.4145 8 8 4.5000 -1.3569 -2.3389 9 7 6.2264 -2.5717 -1.6562 10 6 7.0191 -3.1188 -0.5467 11 6 7.1385 -4.6388 -0.7346 12 6 7.7139 -4.9319 -2.1222 13 6 6.7672 -4.3872 -3.1942 14 6 7.3270 -4.7095 -4.5813 15 8 6.4445 -4.1974 -5.5818 16 7 5.4483 -5.0067 -3.0432 17 6 4.4313 -4.6683 -3.8955 18 1 4.6017 -3.9451 -4.6794 19 6 3.1816 -5.2556 -3.7528 20 7 2.9744 -6.1381 -2.7985 21 14 1.7946 -4.7947 -4.9159 22 1 2.1879 -5.1224 -6.3098 23 1 0.5717 -5.5555 -4.5541 24 1 1.5212 -3.3391 -4.8080 25 6 6.6400 -2.8694 -3.0342 26 6 2.2542 -1.0930 -0.0005 27 8 1.8805 -2.2524 -0.0001 28 1 -0.3634 -0.0007 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3634 -0.8896 -0.5145 31 1 1.9250 2.1373 0.0010 32 1 5.5409 -0.9911 0.5170 33 1 4.5145 -2.4453 0.5224 34 1 8.0118 -2.6684 -0.5500 35 1 6.5213 -2.9041 0.3988 36 1 6.1537 -5.0974 -0.6449 37 1 7.8016 -5.0475 0.0279 38 1 7.8251 -6.0087 -2.2492 39 1 8.6877 -4.4521 -2.2199 40 1 8.3088 -4.2494 -4.6927 41 1 7.4170 -5.7898 -4.6946 42 1 6.7372 -4.3661 -6.4879 43 1 5.2953 -5.6564 -2.3395 44 1 2.1010 -6.5483 -2.6985 45 1 5.8920 -2.4900 -3.7303 46 1 7.6012 -2.3969 -3.2374 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724907136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:32 Heat of formation + Delta-G solvation = -33.393555 kcal Electronic energy + Delta-G solvation = -32054.924851 eV Core-core repulsion = 27788.859763 eV Total energy + Delta-G solvation = -4266.065088 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.41242 -41.24532 -39.30576 -38.44836 -37.17099 -36.21729 -35.59257 -34.02704 -32.86165 -32.49629 -30.55986 -29.53638 -28.00293 -26.60298 -26.16505 -25.55145 -23.65953 -22.96229 -22.45821 -20.90948 -19.78081 -19.23720 -18.71650 -18.36192 -17.82615 -17.45057 -17.28038 -16.96013 -16.76073 -16.37620 -16.11692 -15.73524 -15.64854 -15.49676 -15.05653 -14.76506 -14.50063 -14.48424 -14.13418 -13.77748 -13.63775 -13.55917 -13.48554 -13.37681 -13.09527 -12.95200 -12.92736 -12.79417 -12.56943 -12.16153 -11.93844 -11.78023 -11.50282 -11.45483 -11.41177 -11.30455 -10.91771 -10.60570 -10.57668 -9.64820 -9.52580 -8.81820 -7.85396 -5.04657 0.64859 1.08857 1.28550 1.36589 1.39671 1.55536 1.65209 2.13362 2.33520 2.58682 3.37377 3.44607 3.52265 3.66700 3.87534 3.95574 4.02155 4.03886 4.08095 4.11692 4.20948 4.33795 4.40384 4.46831 4.52843 4.60994 4.64541 4.71501 4.78599 4.83529 4.87239 4.93322 4.97127 5.04400 5.06597 5.20770 5.45694 5.54618 5.67592 5.73925 5.86647 6.40223 6.51168 6.59930 6.93793 7.14711 7.26920 7.48780 8.20564 8.41003 9.38732 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005250 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.796844 B = 5331.747204 C = 6863.326532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.561 5.561 3 C 0.277 3.723 4 N -0.305 5.305 5 N -0.444 5.444 6 C 0.149 3.851 7 C 0.490 3.510 8 O -0.583 6.583 9 N -0.592 5.592 10 C 0.101 3.899 11 C -0.131 4.131 12 C -0.108 4.108 13 C 0.173 3.827 14 C 0.075 3.925 15 O -0.576 6.576 16 N -0.709 5.709 17 C -0.164 4.164 18 H 0.077 0.923 19 C -0.091 4.091 20 N -0.973 5.973 21 Si 0.943 3.057 22 H -0.274 1.274 23 H -0.299 1.299 24 H -0.311 1.311 25 C 0.118 3.882 26 C 0.623 3.377 27 O -0.602 6.602 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.053 0.947 31 H 0.296 0.704 32 H 0.166 0.834 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.035 0.965 42 H 0.375 0.625 43 H 0.370 0.630 44 H 0.237 0.763 45 H 0.045 0.955 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.173 15.214 10.163 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.289 5.289 3 C -0.020 4.020 4 N -0.126 5.126 5 N -0.263 5.263 6 C 0.024 3.976 7 C 0.277 3.723 8 O -0.463 6.463 9 N -0.324 5.324 10 C -0.020 4.020 11 C -0.169 4.169 12 C -0.146 4.146 13 C 0.082 3.918 14 C -0.005 4.005 15 O -0.382 6.382 16 N -0.348 5.348 17 C -0.297 4.297 18 H 0.095 0.905 19 C -0.281 4.281 20 N -0.628 5.628 21 Si 0.777 3.223 22 H -0.200 1.200 23 H -0.225 1.225 24 H -0.240 1.240 25 C -0.007 4.007 26 C 0.322 3.678 27 O -0.479 6.479 28 H 0.115 0.885 29 H 0.153 0.847 30 H 0.072 0.928 31 H 0.311 0.689 32 H 0.183 0.817 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.053 0.947 37 H 0.130 0.870 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.222 0.778 43 H 0.203 0.797 44 H 0.046 0.954 45 H 0.063 0.937 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.167 15.149 10.069 20.839 hybrid contribution -2.070 -1.091 -1.375 2.714 sum 8.096 14.059 8.694 18.406 Atomic orbital electron populations 1.22150 0.72073 1.05458 1.05102 1.46098 1.10142 1.06013 1.66617 1.27180 0.84401 0.96011 0.94456 1.76867 1.20375 0.89855 1.25538 1.48358 1.05169 1.04283 1.68496 1.21393 0.86368 0.95516 0.94282 1.21324 0.80263 0.78795 0.91957 1.90673 1.53880 1.54221 1.47495 1.47924 1.27236 1.48902 1.08301 1.22244 0.97238 0.93991 0.88554 1.21941 1.01310 0.95816 0.97813 1.21635 0.98352 1.01475 0.93123 1.20480 0.86334 0.91388 0.93629 1.22743 0.91963 0.96893 0.88855 1.86807 1.51534 1.81567 1.18262 1.42519 1.06783 1.49020 1.36478 1.19496 0.89220 1.15076 1.05918 0.90489 1.25191 0.99739 1.01980 1.01214 1.69740 1.21825 1.34596 1.36620 0.85603 0.80768 0.75779 0.80120 1.20032 1.22539 1.23995 1.21903 0.99052 0.97271 0.82446 1.17248 0.83323 0.85509 0.81757 1.91115 1.78555 1.17980 1.60202 0.88485 0.84739 0.92777 0.68910 0.81696 0.86577 0.86993 0.88570 0.94717 0.86963 0.91553 0.87510 0.91205 0.94643 0.77752 0.79724 0.95381 0.93666 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.74 11.05 127.77 1.41 3.15 16 2 N -0.56 -15.67 3.14 -683.69 -2.15 -17.81 16 3 C 0.28 5.55 12.66 179.82 2.28 7.83 16 4 N -0.31 -8.73 12.53 -59.42 -0.74 -9.47 16 5 N -0.44 -16.28 3.11 -481.77 -1.50 -17.78 16 6 C 0.15 4.96 5.21 85.63 0.45 5.40 16 7 C 0.49 20.68 7.77 87.66 0.68 21.36 16 8 O -0.58 -31.68 15.84 -3.03 -0.05 -31.73 16 9 N -0.59 -20.90 2.88 -818.13 -2.36 -23.26 16 10 C 0.10 2.30 6.37 86.51 0.55 2.85 16 11 C -0.13 -3.30 5.93 30.82 0.18 -3.12 16 12 C -0.11 -2.86 4.76 30.62 0.15 -2.71 16 13 C 0.17 6.48 0.68 3.67 0.00 6.48 16 14 C 0.08 2.55 6.08 71.98 0.44 2.98 16 15 O -0.58 -22.77 10.11 -148.98 -1.51 -24.28 16 16 N -0.71 -36.57 4.75 -303.04 -1.44 -38.01 16 17 C -0.16 -10.05 8.21 84.03 0.69 -9.36 16 18 H 0.08 4.89 5.28 -2.91 -0.02 4.88 16 19 C -0.09 -6.03 5.50 84.86 0.47 -5.56 16 20 N -0.97 -66.71 13.06 21.65 0.28 -66.42 16 21 Si 0.94 55.77 29.55 68.60 2.03 57.80 16 22 H -0.27 -15.15 7.11 99.48 0.71 -14.45 16 23 H -0.30 -17.55 7.11 99.48 0.71 -16.84 16 24 H -0.31 -19.22 7.11 99.48 0.71 -18.52 16 25 C 0.12 4.53 4.84 86.35 0.42 4.95 16 26 C 0.62 25.88 8.60 178.99 1.54 27.42 16 27 O -0.60 -32.10 17.72 -4.72 -0.08 -32.18 16 28 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.41 8.08 -2.39 -0.02 1.39 16 31 H 0.30 1.25 8.06 -2.91 -0.02 1.22 16 32 H 0.17 3.61 7.93 -2.39 -0.02 3.59 16 33 H 0.12 3.91 7.67 -2.39 -0.02 3.89 16 34 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.10 1.80 5.93 -2.39 -0.01 1.78 16 36 H 0.03 1.23 6.75 -2.38 -0.02 1.21 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.38 10.79 9.12 -74.05 -0.68 10.12 16 43 H 0.37 20.69 6.43 -92.71 -0.60 20.09 16 44 H 0.24 16.25 8.31 -92.71 -0.77 15.48 16 45 H 0.04 2.28 5.69 -2.39 -0.01 2.27 16 46 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -111.75 374.20 1.50 -110.26 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: -0.24 Total: 31.22 kcal Atomic # 6 Polarization: 52.41 SS G_CDS: 9.25 Total: 61.66 kcal Atomic # 7 Polarization: -164.84 SS G_CDS: -7.91 Total: -172.75 kcal Atomic # 8 Polarization: -86.55 SS G_CDS: -1.64 Total: -88.19 kcal Atomic # 14 Polarization: 55.77 SS G_CDS: 2.03 Total: 57.80 kcal Total: -111.75 1.50 -110.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724907136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.865 kcal (2) G-P(sol) polarization free energy of solvation -111.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -110.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds