Wall clock time and date at job start Sat Apr 11 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37365 * 125.83419 * 2 1 4 4 N 1.29394 * 108.83233 * 179.97438 * 3 2 1 5 5 N 1.40167 * 108.14327 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.35571 * 180.02562 * 5 4 3 7 7 C 1.50709 * 109.46910 * 270.02401 * 6 5 4 8 8 O 1.21276 * 120.00074 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99697 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63439 * 0.02879 * 9 7 6 11 11 C 1.53193 * 108.77139 * 233.58416 * 10 9 7 12 12 C 1.53036 * 109.31629 * 305.36157 * 11 10 9 13 13 C 1.53043 * 109.53777 * 61.36486 * 12 11 10 14 14 C 1.53004 * 109.52544 * 178.66721 * 13 12 11 15 15 O 1.42895 * 109.47055 * 184.92247 * 14 13 12 16 16 N 1.46506 * 109.49356 * 58.59079 * 13 12 11 17 17 C 1.36938 * 119.99589 * 180.16301 * 16 13 12 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 13 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.46927 * 120.62860 * 180.02562 * 9 7 6 26 26 C 1.34818 * 125.83500 * 180.29102 * 2 1 3 27 27 O 1.21809 * 126.30042 * 0.03928 * 26 2 1 28 28 H 1.09004 * 109.46916 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47260 * 120.01958 * 1 2 3 30 30 H 1.09002 * 109.47031 * 240.02379 * 1 2 3 31 31 H 1.08002 * 125.58394 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47828 * 150.02803 * 6 5 4 33 33 H 1.08998 * 109.47014 * 30.01935 * 6 5 4 34 34 H 1.08997 * 109.58218 * 353.37025 * 10 9 7 35 35 H 1.09000 * 109.58732 * 113.65674 * 10 9 7 36 36 H 1.08996 * 109.50130 * 65.31345 * 11 10 9 37 37 H 1.09006 * 109.49495 * 185.37992 * 11 10 9 38 38 H 1.09005 * 109.46086 * 301.35248 * 12 11 10 39 39 H 1.09002 * 109.46640 * 181.38908 * 12 11 10 40 40 H 1.09007 * 109.46950 * 304.92303 * 14 13 12 41 41 H 1.09000 * 109.46964 * 64.92130 * 14 13 12 42 42 H 0.96700 * 113.99831 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00080 * 0.15791 * 16 13 12 44 44 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.58727 * 6.63136 * 25 9 7 46 46 H 1.08996 * 109.70601 * 246.27221 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7353 0.0005 5 7 3.5345 -0.6661 0.0003 6 6 4.7313 -1.5109 0.0013 7 6 5.1434 -1.7998 -1.4193 8 8 4.5009 -1.3445 -2.3416 9 7 6.2265 -2.5633 -1.6646 10 6 7.0153 -3.1216 -0.5578 11 6 8.4832 -2.7282 -0.7511 12 6 8.9476 -3.1720 -2.1401 13 6 8.1128 -2.4634 -3.2094 14 6 8.5993 -2.8820 -4.5984 15 8 7.8976 -2.1347 -5.5940 16 7 8.2542 -1.0130 -3.0584 17 6 7.5909 -0.1684 -3.9080 18 1 6.9639 -0.5714 -4.6896 19 6 7.7252 1.2058 -3.7653 20 7 8.4856 1.6970 -2.8098 21 14 6.8210 2.3581 -4.9246 22 1 5.3585 2.1268 -4.8114 23 1 7.1286 3.7653 -4.5635 24 1 7.2567 2.0982 -6.3202 25 6 6.6411 -2.8533 -3.0441 26 6 2.2543 -1.0930 -0.0056 27 8 1.8806 -2.2523 -0.0121 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5141 -0.8898 30 1 -0.3633 -0.5135 0.8902 31 1 1.9250 2.1374 0.0004 32 1 4.5145 -2.4478 0.5143 33 1 5.5408 -0.9935 0.5163 34 1 6.6513 -2.7214 0.3884 35 1 6.9232 -4.2077 -0.5549 36 1 8.5849 -1.6467 -0.6619 37 1 9.0935 -3.2150 0.0097 38 1 8.8224 -4.2504 -2.2375 39 1 9.9988 -2.9153 -2.2709 40 1 9.6682 -2.6861 -4.6833 41 1 8.4121 -3.9459 -4.7436 42 1 8.1560 -2.3484 -6.5010 43 1 8.8175 -0.6511 -2.3566 44 1 8.5792 2.6573 -2.7098 45 1 6.0301 -2.2761 -3.7382 46 1 6.5200 -3.9171 -3.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724907137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:36 Heat of formation + Delta-G solvation = 3.944031 kcal Electronic energy + Delta-G solvation = -31837.820438 eV Core-core repulsion = 27573.374429 eV Total energy + Delta-G solvation = -4264.446008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.26656 -39.80116 -37.76644 -37.08218 -35.72673 -35.07471 -33.77498 -32.26634 -31.69599 -30.99280 -28.77655 -28.20769 -26.97960 -25.31198 -24.79311 -23.42543 -22.57956 -21.67938 -21.24377 -19.47443 -18.28858 -17.51626 -17.38324 -17.00347 -16.21334 -16.15328 -15.98783 -15.73121 -15.30571 -14.88486 -14.61934 -14.26483 -14.14536 -13.85859 -13.56145 -13.51538 -13.17964 -12.98619 -12.90085 -12.80687 -12.34613 -12.30060 -12.04182 -11.94952 -11.72169 -11.47969 -11.16704 -10.78220 -10.65402 -10.58431 -10.43284 -10.30098 -10.14895 -10.10138 -9.68682 -9.44965 -9.22373 -8.93236 -8.74000 -8.37200 -8.01690 -6.74650 -5.50328 -2.75184 1.79893 2.13883 2.80248 3.15577 3.17619 3.60088 3.63563 3.65829 3.72205 4.44196 4.76148 4.78071 4.82613 4.88589 4.96027 5.07574 5.10559 5.22814 5.24905 5.35219 5.46481 5.47630 5.50850 5.65548 5.67814 5.80750 5.88852 5.90603 5.94075 6.05399 6.12745 6.17738 6.22272 6.28534 6.40256 6.60410 6.64763 6.81362 6.92272 7.13333 7.74935 7.92810 8.16461 8.23038 8.42163 8.67868 8.75787 9.81470 10.28181 10.64240 11.73425 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.004783 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.609377 B = 5852.401836 C = 7293.944201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.563 5.563 3 C 0.245 3.755 4 N -0.257 5.257 5 N -0.431 5.431 6 C 0.145 3.855 7 C 0.505 3.495 8 O -0.516 6.516 9 N -0.592 5.592 10 C 0.109 3.891 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.188 3.812 14 C 0.075 3.925 15 O -0.536 6.536 16 N -0.701 5.701 17 C -0.194 4.194 18 H 0.089 0.911 19 C -0.022 4.022 20 N -0.946 5.946 21 Si 0.902 3.098 22 H -0.289 1.289 23 H -0.297 1.297 24 H -0.291 1.291 25 C 0.112 3.888 26 C 0.652 3.348 27 O -0.560 6.560 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.230 0.770 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.023 0.977 42 H 0.351 0.649 43 H 0.381 0.619 44 H 0.249 0.751 45 H 0.102 0.898 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.668 -8.352 9.002 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.293 5.293 3 C -0.054 4.054 4 N -0.077 5.077 5 N -0.251 5.251 6 C 0.020 3.980 7 C 0.290 3.710 8 O -0.390 6.390 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.094 3.906 14 C -0.006 4.006 15 O -0.338 6.338 16 N -0.342 5.342 17 C -0.325 4.325 18 H 0.107 0.893 19 C -0.215 4.215 20 N -0.597 5.597 21 Si 0.735 3.265 22 H -0.216 1.216 23 H -0.224 1.224 24 H -0.218 1.218 25 C -0.012 4.012 26 C 0.351 3.649 27 O -0.434 6.434 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.246 0.754 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.195 0.805 43 H 0.216 0.784 44 H 0.058 0.942 45 H 0.120 0.880 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.660 -8.303 8.924 14.396 hybrid contribution -0.563 0.494 -1.012 1.259 sum -8.223 -7.809 7.911 13.827 Atomic orbital electron populations 1.21740 0.74492 1.03924 1.03632 1.45832 1.08658 1.06726 1.68064 1.25944 0.85830 0.94594 0.99075 1.77142 1.17956 0.91399 1.21154 1.48240 1.05397 1.03223 1.68229 1.21291 0.85486 0.94494 0.96773 1.20478 0.81077 0.78533 0.90888 1.90721 1.53281 1.49450 1.45520 1.47690 1.26853 1.50662 1.07394 1.21691 0.92183 0.98069 0.89524 1.21866 0.94849 1.03432 0.96892 1.21616 0.99914 0.99178 0.94585 1.19946 0.92358 0.87457 0.90794 1.22751 0.95248 0.92025 0.90610 1.86978 1.65200 1.65271 1.16355 1.42390 1.56192 0.97621 1.37971 1.19426 1.19380 0.86749 1.06938 0.89305 1.24615 1.00975 0.96761 0.99166 1.69637 1.44057 1.11287 1.34766 0.86310 0.79799 0.79990 0.80440 1.21596 1.22355 1.21827 1.22114 0.98558 0.98150 0.82424 1.16618 0.81955 0.85009 0.81278 1.91042 1.77845 1.15317 1.59209 0.89004 0.90671 0.90706 0.75401 0.86537 0.85884 0.90693 0.91681 0.89916 0.91310 0.91988 0.91470 0.94381 0.95899 0.80465 0.78394 0.94174 0.88022 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.86 11.08 59.85 0.66 1.52 16 2 N -0.56 -7.49 3.14 -130.10 -0.41 -7.90 16 3 C 0.24 3.05 12.61 -89.12 -1.12 1.93 16 4 N -0.26 -4.43 12.53 29.87 0.37 -4.05 16 5 N -0.43 -7.79 3.11 -66.31 -0.21 -7.99 16 6 C 0.14 2.39 5.21 -5.19 -0.03 2.37 16 7 C 0.51 10.43 7.77 -10.98 -0.09 10.35 16 8 O -0.52 -13.27 15.84 5.56 0.09 -13.18 16 9 N -0.59 -10.73 2.89 -172.79 -0.50 -11.23 16 10 C 0.11 1.43 6.34 -3.71 -0.02 1.41 16 11 C -0.13 -1.80 5.91 -26.61 -0.16 -1.96 16 12 C -0.11 -1.69 4.76 -26.69 -0.13 -1.82 16 13 C 0.19 3.58 0.68 -131.71 -0.09 3.49 16 14 C 0.07 1.32 6.09 37.16 0.23 1.55 16 15 O -0.54 -10.67 10.05 -35.23 -0.35 -11.02 16 16 N -0.70 -17.10 4.75 -47.13 -0.22 -17.33 16 17 C -0.19 -5.52 8.06 -15.06 -0.12 -5.64 16 18 H 0.09 2.64 5.26 -52.49 -0.28 2.36 16 19 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 20 N -0.95 -29.44 13.06 55.49 0.72 -28.71 16 21 Si 0.90 24.77 29.55 -169.99 -5.02 19.74 16 22 H -0.29 -8.16 7.11 56.52 0.40 -7.76 16 23 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 24 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 25 C 0.11 2.19 4.91 -3.73 -0.02 2.18 16 26 C 0.65 11.62 8.61 -86.73 -0.75 10.87 16 27 O -0.56 -11.32 17.77 5.09 0.09 -11.23 16 28 H 0.09 0.39 8.07 -51.93 -0.42 -0.03 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.23 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.57 7.91 -51.93 -0.41 1.16 16 33 H 0.12 1.82 7.69 -51.93 -0.40 1.42 16 34 H 0.07 0.81 5.93 -51.93 -0.31 0.51 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.41 6.75 -51.93 -0.35 1.06 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.35 5.21 9.12 45.56 0.42 5.62 16 43 H 0.38 9.90 6.43 -40.82 -0.26 9.64 16 44 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 45 H 0.10 2.48 5.81 -51.93 -0.30 2.18 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -42.84 374.18 -7.20 -50.04 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.68 Total: 11.75 kcal Atomic # 6 Polarization: 27.21 SS G_CDS: -1.73 Total: 25.48 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -0.24 Total: -77.22 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.18 Total: -35.44 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.02 Total: 19.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -42.84 -7.20 -50.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724907137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.982 kcal (2) G-P(sol) polarization free energy of solvation -42.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds