Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37365 * 125.83419 * 2 1 4 4 N 1.29394 * 108.83233 * 179.97438 * 3 2 1 5 5 N 1.40167 * 108.14327 * 0.02562 * 4 3 2 6 6 C 1.46496 * 126.35571 * 180.02562 * 5 4 3 7 7 C 1.50709 * 109.46910 * 270.02401 * 6 5 4 8 8 O 1.21276 * 120.00074 * 0.02562 * 7 6 5 9 9 N 1.34772 * 119.99697 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63439 * 0.02879 * 9 7 6 11 11 C 1.53193 * 108.77139 * 233.58416 * 10 9 7 12 12 C 1.53036 * 109.31629 * 305.36157 * 11 10 9 13 13 C 1.53043 * 109.53777 * 61.36486 * 12 11 10 14 14 C 1.53004 * 109.52544 * 178.66721 * 13 12 11 15 15 O 1.42895 * 109.47055 * 184.92247 * 14 13 12 16 16 N 1.46506 * 109.49356 * 58.59079 * 13 12 11 17 17 C 1.36938 * 119.99589 * 180.16301 * 16 13 12 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 13 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 13 20 20 N 1.31621 * 119.99673 * 359.71804 * 19 17 16 21 21 Si 1.86795 * 120.00115 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47163 * 59.99668 * 21 19 17 23 23 H 1.48505 * 109.47234 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47124 * 299.99692 * 21 19 17 25 25 C 1.46927 * 120.62860 * 180.02562 * 9 7 6 26 26 C 1.34818 * 125.83500 * 180.29102 * 2 1 3 27 27 O 1.21809 * 126.30042 * 0.03928 * 26 2 1 28 28 H 1.09004 * 109.46916 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.47260 * 120.01958 * 1 2 3 30 30 H 1.09002 * 109.47031 * 240.02379 * 1 2 3 31 31 H 1.08002 * 125.58394 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47828 * 150.02803 * 6 5 4 33 33 H 1.08998 * 109.47014 * 30.01935 * 6 5 4 34 34 H 1.08997 * 109.58218 * 353.37025 * 10 9 7 35 35 H 1.09000 * 109.58732 * 113.65674 * 10 9 7 36 36 H 1.08996 * 109.50130 * 65.31345 * 11 10 9 37 37 H 1.09006 * 109.49495 * 185.37992 * 11 10 9 38 38 H 1.09005 * 109.46086 * 301.35248 * 12 11 10 39 39 H 1.09002 * 109.46640 * 181.38908 * 12 11 10 40 40 H 1.09007 * 109.46950 * 304.92303 * 14 13 12 41 41 H 1.09000 * 109.46964 * 64.92130 * 14 13 12 42 42 H 0.96700 * 113.99831 * 179.97438 * 15 14 13 43 43 H 0.96999 * 120.00080 * 0.15791 * 16 13 12 44 44 H 0.97000 * 120.00043 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.58727 * 6.63136 * 25 9 7 46 46 H 1.08996 * 109.70601 * 246.27221 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5065 0.7353 0.0005 5 7 3.5345 -0.6661 0.0003 6 6 4.7313 -1.5109 0.0013 7 6 5.1434 -1.7998 -1.4193 8 8 4.5009 -1.3445 -2.3416 9 7 6.2265 -2.5633 -1.6646 10 6 7.0153 -3.1216 -0.5578 11 6 8.4832 -2.7282 -0.7511 12 6 8.9476 -3.1720 -2.1401 13 6 8.1128 -2.4634 -3.2094 14 6 8.5993 -2.8820 -4.5984 15 8 7.8976 -2.1347 -5.5940 16 7 8.2542 -1.0130 -3.0584 17 6 7.5909 -0.1684 -3.9080 18 1 6.9639 -0.5714 -4.6896 19 6 7.7252 1.2058 -3.7653 20 7 8.4856 1.6970 -2.8098 21 14 6.8210 2.3581 -4.9246 22 1 5.3585 2.1268 -4.8114 23 1 7.1286 3.7653 -4.5635 24 1 7.2567 2.0982 -6.3202 25 6 6.6411 -2.8533 -3.0441 26 6 2.2543 -1.0930 -0.0056 27 8 1.8806 -2.2523 -0.0121 28 1 -0.3633 1.0277 -0.0005 29 1 -0.3634 -0.5141 -0.8898 30 1 -0.3633 -0.5135 0.8902 31 1 1.9250 2.1374 0.0004 32 1 4.5145 -2.4478 0.5143 33 1 5.5408 -0.9935 0.5163 34 1 6.6513 -2.7214 0.3884 35 1 6.9232 -4.2077 -0.5549 36 1 8.5849 -1.6467 -0.6619 37 1 9.0935 -3.2150 0.0097 38 1 8.8224 -4.2504 -2.2375 39 1 9.9988 -2.9153 -2.2709 40 1 9.6682 -2.6861 -4.6833 41 1 8.4121 -3.9459 -4.7436 42 1 8.1560 -2.3484 -6.5010 43 1 8.8175 -0.6511 -2.3566 44 1 8.5792 2.6573 -2.7098 45 1 6.0301 -2.2761 -3.7382 46 1 6.5200 -3.9171 -3.2483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724907137.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -31.091534 kcal Electronic energy + Delta-G solvation = -31839.339694 eV Core-core repulsion = 27573.374429 eV Total energy + Delta-G solvation = -4265.965265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.43195 -41.25694 -39.30853 -38.42096 -37.17700 -36.22899 -35.55314 -34.00818 -32.88276 -32.50296 -30.55264 -29.53112 -27.97537 -26.59889 -26.17283 -25.50469 -23.72697 -22.94905 -22.43772 -20.92055 -19.77256 -19.23305 -18.72359 -18.37090 -17.79893 -17.46799 -17.19877 -17.07975 -16.67801 -16.35580 -16.14269 -15.78618 -15.62435 -15.39335 -15.08927 -14.76731 -14.51697 -14.45711 -14.12822 -13.76229 -13.60487 -13.50971 -13.49800 -13.36953 -13.07987 -12.91005 -12.89264 -12.75297 -12.57291 -12.09305 -11.90726 -11.77804 -11.50701 -11.39290 -11.34034 -11.28816 -10.87651 -10.60881 -10.57113 -9.66284 -9.53178 -8.78297 -7.78826 -4.98690 0.66887 1.08896 1.37730 1.42983 1.48304 1.53140 1.65083 2.09000 2.32183 2.64995 3.38922 3.42376 3.52733 3.69694 3.90646 3.94811 4.02316 4.04653 4.07922 4.12218 4.20830 4.34669 4.40647 4.46682 4.52772 4.60306 4.64661 4.75130 4.78917 4.83126 4.86847 4.94369 4.98395 5.03706 5.06790 5.20284 5.44598 5.55710 5.63930 5.71979 5.93678 6.46031 6.50321 6.59677 6.90355 7.15575 7.25806 7.55346 8.23676 8.47284 9.45332 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010835 B = 0.004783 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.609377 B = 5852.401836 C = 7293.944201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.558 5.558 3 C 0.272 3.728 4 N -0.318 5.318 5 N -0.443 5.443 6 C 0.148 3.852 7 C 0.490 3.510 8 O -0.583 6.583 9 N -0.591 5.591 10 C 0.100 3.900 11 C -0.128 4.128 12 C -0.109 4.109 13 C 0.176 3.824 14 C 0.073 3.927 15 O -0.572 6.572 16 N -0.707 5.707 17 C -0.163 4.163 18 H 0.074 0.926 19 C -0.087 4.087 20 N -0.974 5.974 21 Si 0.945 3.055 22 H -0.307 1.307 23 H -0.295 1.295 24 H -0.284 1.284 25 C 0.116 3.884 26 C 0.634 3.366 27 O -0.596 6.596 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.287 0.713 32 H 0.146 0.854 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.039 0.961 41 H 0.064 0.936 42 H 0.372 0.628 43 H 0.372 0.628 44 H 0.240 0.760 45 H 0.045 0.955 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 -9.996 10.395 16.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.286 5.286 3 C -0.026 4.026 4 N -0.139 5.139 5 N -0.262 5.262 6 C 0.023 3.977 7 C 0.277 3.723 8 O -0.463 6.463 9 N -0.323 5.323 10 C -0.021 4.021 11 C -0.166 4.166 12 C -0.147 4.147 13 C 0.084 3.916 14 C -0.007 4.007 15 O -0.378 6.378 16 N -0.346 5.346 17 C -0.295 4.295 18 H 0.092 0.908 19 C -0.276 4.276 20 N -0.629 5.629 21 Si 0.778 3.222 22 H -0.236 1.236 23 H -0.221 1.221 24 H -0.211 1.211 25 C -0.009 4.009 26 C 0.333 3.667 27 O -0.474 6.474 28 H 0.159 0.841 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.302 0.698 32 H 0.164 0.836 33 H 0.155 0.845 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.082 0.918 42 H 0.220 0.780 43 H 0.205 0.795 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.691 -9.998 10.315 16.295 hybrid contribution -0.622 0.866 -1.487 1.829 sum -8.313 -9.132 8.829 15.180 Atomic orbital electron populations 1.22173 0.71536 1.07189 1.03637 1.46139 1.10270 1.05661 1.66500 1.27109 0.84477 0.96225 0.94804 1.77117 1.20807 0.91015 1.24934 1.48406 1.05719 1.03874 1.68188 1.21410 0.86015 0.96013 0.94266 1.21314 0.81103 0.77905 0.91966 1.90674 1.55638 1.52275 1.47678 1.47903 1.26474 1.49704 1.08216 1.22145 0.91122 1.00186 0.88690 1.21847 0.95807 1.01296 0.97623 1.21642 0.98925 1.00830 0.93322 1.20421 0.92937 0.84725 0.93488 1.22757 0.94853 0.93939 0.89149 1.86882 1.66091 1.66571 1.18255 1.42483 1.55358 0.99951 1.36849 1.19481 1.17003 0.87172 1.05886 0.90792 1.25119 1.03166 0.98184 1.01178 1.69737 1.46177 1.10579 1.36412 0.85598 0.77783 0.79001 0.79770 1.23580 1.22143 1.21062 1.21930 0.97554 0.98874 0.82527 1.16984 0.82535 0.85616 0.81540 1.90985 1.78511 1.16874 1.61038 0.84142 0.91636 0.89780 0.69783 0.83622 0.84509 0.88374 0.87841 0.93934 0.86972 0.88021 0.91314 0.94230 0.91791 0.78034 0.79476 0.95102 0.93647 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 11.08 127.77 1.42 2.77 16 2 N -0.56 -14.19 3.14 -683.68 -2.15 -16.34 16 3 C 0.27 6.31 12.61 179.82 2.27 8.58 16 4 N -0.32 -10.99 12.53 -59.41 -0.74 -11.74 16 5 N -0.44 -16.23 3.11 -481.77 -1.50 -17.73 16 6 C 0.15 4.90 5.21 85.64 0.45 5.35 16 7 C 0.49 20.71 7.77 87.66 0.68 21.39 16 8 O -0.58 -31.67 15.84 -3.02 -0.05 -31.72 16 9 N -0.59 -20.96 2.89 -818.98 -2.37 -23.33 16 10 C 0.10 2.29 6.34 86.36 0.55 2.84 16 11 C -0.13 -3.08 5.91 30.67 0.18 -2.89 16 12 C -0.11 -2.83 4.76 30.62 0.15 -2.69 16 13 C 0.18 6.46 0.68 3.67 0.00 6.46 16 14 C 0.07 2.45 6.09 71.98 0.44 2.89 16 15 O -0.57 -22.71 10.05 -148.98 -1.50 -24.20 16 16 N -0.71 -34.95 4.75 -303.03 -1.44 -36.39 16 17 C -0.16 -9.54 8.06 84.03 0.68 -8.87 16 18 H 0.07 4.57 5.26 -2.91 -0.02 4.56 16 19 C -0.09 -5.40 5.50 84.86 0.47 -4.93 16 20 N -0.97 -62.53 13.06 21.65 0.28 -62.25 16 21 Si 0.94 52.77 29.55 68.60 2.03 54.80 16 22 H -0.31 -17.85 7.11 99.48 0.71 -17.14 16 23 H -0.30 -16.20 7.11 99.48 0.71 -15.49 16 24 H -0.28 -15.23 7.11 99.48 0.71 -14.53 16 25 C 0.12 4.48 4.91 86.35 0.42 4.90 16 26 C 0.63 22.82 8.61 178.99 1.54 24.36 16 27 O -0.60 -24.61 17.77 -4.70 -0.08 -24.69 16 28 H 0.14 0.62 8.07 -2.38 -0.02 0.60 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.29 2.65 8.06 -2.91 -0.02 2.62 16 32 H 0.15 3.79 7.91 -2.39 -0.02 3.77 16 33 H 0.14 4.02 7.69 -2.39 -0.02 4.00 16 34 H 0.10 1.82 5.93 -2.39 -0.01 1.80 16 35 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.39 6.75 -2.39 -0.02 1.38 16 37 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.37 10.83 9.12 -74.06 -0.68 10.16 16 43 H 0.37 19.69 6.43 -92.71 -0.60 19.09 16 44 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.04 2.29 5.81 -2.38 -0.01 2.28 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -102.76 374.18 1.48 -101.27 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.24 Total: 32.16 kcal Atomic # 6 Polarization: 50.92 SS G_CDS: 9.24 Total: 60.15 kcal Atomic # 7 Polarization: -159.86 SS G_CDS: -7.91 Total: -167.77 kcal Atomic # 8 Polarization: -78.99 SS G_CDS: -1.63 Total: -80.61 kcal Atomic # 14 Polarization: 52.77 SS G_CDS: 2.03 Total: 54.80 kcal Total: -102.76 1.48 -101.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724907137.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.181 kcal (2) G-P(sol) polarization free energy of solvation -102.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds