Wall clock time and date at job start Sat Apr 11 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35493 * 126.98284 * 2 1 4 4 N 1.30513 * 107.31086 * 179.83797 * 3 2 1 5 5 N 1.28602 * 109.67255 * 0.43431 * 4 3 2 6 6 C 1.30519 * 109.67113 * 359.72794 * 5 4 3 7 7 C 1.50696 * 126.34781 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.46874 * 269.95115 * 7 6 5 9 9 C 1.42902 * 114.00053 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.46821 * 180.02562 * 9 8 7 11 11 O 1.21278 * 120.00507 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99845 * 180.02562 * 10 9 8 13 13 C 1.46496 * 120.00288 * 174.80262 * 12 10 9 14 14 C 1.53005 * 112.94343 * 295.30849 * 13 12 10 15 15 C 1.52995 * 109.46950 * 304.23492 * 14 13 12 16 16 O 1.42900 * 109.47396 * 178.34995 * 15 14 13 17 17 C 1.53944 * 113.74409 * 163.71793 * 13 12 10 18 18 N 1.47812 * 86.03703 * 222.08130 * 17 13 12 19 19 C 1.36943 * 134.45937 * 204.64068 * 18 17 13 20 20 H 1.08002 * 120.00177 * 179.86781 * 19 18 17 21 21 C 1.38810 * 119.99856 * 359.87226 * 19 18 17 22 22 N 1.31620 * 119.99897 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00203 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47033 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47334 * 119.99528 * 23 21 19 26 26 H 1.48505 * 109.47250 * 239.99810 * 23 21 19 27 27 C 1.47589 * 91.05048 * 24.54745 * 18 17 13 28 28 H 1.09000 * 109.47446 * 269.69014 * 1 2 3 29 29 H 1.08996 * 109.47327 * 149.68797 * 1 2 3 30 30 H 1.09003 * 109.47154 * 29.68580 * 1 2 3 31 31 H 1.08007 * 126.34515 * 359.97217 * 3 2 1 32 32 H 1.08998 * 109.47656 * 29.94984 * 7 6 5 33 33 H 1.09000 * 109.47547 * 149.95421 * 7 6 5 34 34 H 1.08998 * 109.46886 * 300.00026 * 9 8 7 35 35 H 1.08994 * 109.47127 * 59.99987 * 9 8 7 36 36 H 0.96998 * 119.99807 * 354.79510 * 12 10 9 37 37 H 1.09007 * 109.47091 * 64.22951 * 14 13 12 38 38 H 1.08998 * 109.46902 * 184.23023 * 14 13 12 39 39 H 1.09002 * 109.47079 * 298.34578 * 15 14 13 40 40 H 1.09000 * 109.47459 * 58.34887 * 15 14 13 41 41 H 0.96700 * 114.00621 * 180.02562 * 16 15 14 42 42 H 1.08999 * 113.76994 * 336.34629 * 17 13 12 43 43 H 1.09000 * 113.77033 * 107.74349 * 17 13 12 44 44 H 0.97000 * 120.00081 * 180.02562 * 22 21 19 45 45 H 1.08998 * 113.76691 * 221.15024 * 27 18 17 46 46 H 1.08999 * 113.86989 * 89.76617 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0823 0.0000 4 7 3.5090 0.6430 0.0035 5 7 3.5091 -0.6430 -0.0035 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0133 8 8 1.7102 -2.9751 -1.3629 9 6 1.3019 -4.3393 -1.4828 10 6 1.1901 -4.7039 -2.9406 11 8 1.4363 -3.8772 -3.7932 12 7 0.8165 -5.9489 -3.2972 13 6 0.5974 -6.2718 -4.7093 14 6 -0.5749 -5.5027 -5.3220 15 6 -1.8386 -5.7582 -4.4983 16 8 -2.9248 -5.0096 -5.0478 17 6 0.5681 -7.7828 -5.0023 18 7 1.3764 -7.4625 -6.1977 19 6 1.5766 -8.0666 -7.4102 20 1 2.2363 -7.6150 -8.1363 21 6 0.9315 -9.2596 -7.7062 22 7 0.1278 -9.8102 -6.8211 23 14 1.2039 -10.0834 -9.3603 24 1 2.1448 -9.2685 -10.1701 25 1 1.7754 -11.4378 -9.1507 26 1 -0.0925 -10.1984 -10.0756 27 6 1.8791 -6.2296 -5.5609 28 1 -0.3634 -0.0056 1.0276 29 1 -0.3634 -0.8871 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9702 2.1170 -0.0004 32 1 2.5962 -3.1322 0.4969 33 1 0.8911 -2.6214 0.5006 34 1 2.0395 -4.9828 -1.0032 35 1 0.3342 -4.4728 -0.9993 36 1 0.6929 -6.6311 -2.6189 37 1 -0.3499 -4.4361 -5.3208 38 1 -0.7345 -5.8393 -6.3463 39 1 -2.0801 -6.8208 -4.5236 40 1 -1.6690 -5.4486 -3.4671 41 1 -3.7603 -5.1234 -4.5743 42 1 1.0968 -8.3840 -4.2627 43 1 -0.4258 -8.1665 -5.2325 44 1 -0.3228 -10.6440 -7.0278 45 1 1.9299 -5.3756 -6.2363 46 1 2.7938 -6.3717 -4.9854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725207421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:46 Heat of formation + Delta-G solvation = 21.505409 kcal Electronic energy + Delta-G solvation = -29632.979351 eV Core-core repulsion = 25369.294861 eV Total energy + Delta-G solvation = -4263.684490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.42123 -40.12088 -38.56285 -37.29975 -36.43858 -35.39697 -33.70914 -32.14683 -31.83540 -30.45507 -28.65289 -28.04326 -27.08815 -26.27544 -25.08796 -23.36029 -22.72142 -21.78386 -21.36167 -20.44224 -18.74052 -17.81027 -17.41675 -17.16587 -16.87799 -16.80489 -16.62537 -16.19518 -15.47071 -15.36612 -15.17769 -14.77305 -14.56542 -14.32107 -13.87309 -13.82849 -13.74868 -13.59472 -13.24001 -12.69257 -12.44851 -12.26432 -11.92833 -11.80201 -11.76068 -11.59277 -11.09887 -10.94256 -10.79937 -10.76494 -10.69380 -10.55877 -10.15935 -10.14914 -9.96503 -9.76295 -9.67401 -9.58173 -9.23797 -8.93135 -8.65052 -6.95312 -5.83192 -3.14665 1.30251 2.07402 2.46518 2.78541 2.95837 3.37791 3.43932 3.46026 3.67509 4.08808 4.21038 4.24325 4.40943 4.43482 4.45343 4.54928 4.66880 4.80026 4.86149 4.88907 4.96975 5.17409 5.17935 5.19267 5.42981 5.48037 5.48100 5.66287 5.75565 5.76035 5.88539 6.28705 6.39612 6.42431 6.50203 6.56243 6.64050 6.71101 6.79706 7.07405 7.27185 7.45394 7.74245 7.83019 7.91794 8.41292 8.46174 8.99491 9.65258 10.51001 11.34660 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.002268 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.576428 B =12342.109482 C =13030.156591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.469 5.469 3 C 0.155 3.845 4 N -0.297 5.297 5 N -0.270 5.270 6 C 0.176 3.824 7 C 0.149 3.851 8 O -0.355 6.355 9 C 0.043 3.957 10 C 0.510 3.490 11 O -0.511 6.511 12 N -0.715 5.715 13 C 0.125 3.875 14 C -0.096 4.096 15 C 0.083 3.917 16 O -0.575 6.575 17 C 0.167 3.833 18 N -0.605 5.605 19 C -0.217 4.217 20 H 0.083 0.917 21 C -0.008 4.008 22 N -0.923 5.923 23 Si 0.914 3.086 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.128 3.872 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.397 0.603 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.372 0.628 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.253 0.747 45 H 0.052 0.948 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 14.554 20.295 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.160 5.160 3 C -0.132 4.132 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.091 4.091 7 C 0.070 3.930 8 O -0.272 6.272 9 C -0.037 4.037 10 C 0.294 3.706 11 O -0.385 6.385 12 N -0.368 5.368 13 C 0.039 3.961 14 C -0.134 4.134 15 C 0.006 3.994 16 O -0.379 6.379 17 C 0.041 3.959 18 N -0.332 5.332 19 C -0.345 4.345 20 H 0.101 0.899 21 C -0.204 4.204 22 N -0.571 5.571 23 Si 0.744 3.256 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 C 0.001 3.999 28 H 0.103 0.897 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.217 0.783 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.712 15.224 18.805 24.650 hybrid contribution -1.814 -1.162 0.232 2.167 sum -6.526 14.062 19.037 24.551 Atomic orbital electron populations 1.22189 0.74990 1.06040 1.04126 1.46184 1.09454 1.06700 1.53659 1.26509 0.87191 0.94968 1.04562 1.74303 1.18104 1.03100 1.18132 1.74285 1.16915 1.03287 1.16788 1.24280 0.87428 0.91411 1.06020 1.20494 1.00951 0.86079 0.85467 1.88111 1.89327 1.26000 1.23726 1.22335 1.00933 0.84207 0.96206 1.20050 0.77842 0.82911 0.89770 1.90749 1.46916 1.49022 1.51768 1.46098 1.70023 1.11007 1.09709 1.22985 0.96349 0.98615 0.78108 1.21336 0.90663 1.00827 1.00602 1.22125 0.87092 0.94715 0.95505 1.86510 1.20792 1.71472 1.59122 1.22580 0.97990 0.87563 0.87734 1.45740 1.51685 1.23648 1.12109 1.19066 1.23095 1.03048 0.89255 0.89902 1.24770 0.99653 0.97551 0.98444 1.69788 1.32968 1.20219 1.34118 0.86013 0.77447 0.79159 0.82977 1.20380 1.21750 1.21651 1.22807 0.93385 0.90616 0.93083 0.89747 0.88635 0.88580 0.76247 0.89092 0.91114 0.89780 0.90208 0.76898 0.90911 0.89025 0.93178 0.94744 0.78292 0.95090 0.89971 0.93659 0.92969 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.25 10.89 59.85 0.65 0.90 16 2 N -0.47 -3.89 3.15 -122.69 -0.39 -4.28 16 3 C 0.15 1.38 12.74 -89.95 -1.15 0.23 16 4 N -0.30 -4.01 12.21 29.69 0.36 -3.64 16 5 N -0.27 -3.93 12.21 32.80 0.40 -3.53 16 6 C 0.18 1.96 7.66 -154.99 -1.19 0.77 16 7 C 0.15 1.25 6.11 36.00 0.22 1.47 16 8 O -0.35 -4.29 9.86 -55.14 -0.54 -4.83 16 9 C 0.04 0.41 6.42 36.00 0.23 0.64 16 10 C 0.51 7.39 7.56 -10.99 -0.08 7.31 16 11 O -0.51 -9.98 14.90 -14.35 -0.21 -10.20 16 12 N -0.71 -9.88 4.53 -49.08 -0.22 -10.11 16 13 C 0.13 2.30 0.67 -134.04 -0.09 2.21 16 14 C -0.10 -1.79 4.81 -26.73 -0.13 -1.92 16 15 C 0.08 1.27 6.83 37.15 0.25 1.52 16 16 O -0.57 -8.66 13.66 -35.23 -0.48 -9.14 16 17 C 0.17 3.64 6.69 -2.84 -0.02 3.62 16 18 N -0.61 -15.28 3.55 -177.50 -0.63 -15.91 16 19 C -0.22 -6.04 10.70 -15.06 -0.16 -6.21 16 20 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -26.39 11.39 55.49 0.63 -25.76 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 C 0.13 2.79 7.55 -2.96 -0.02 2.76 16 28 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 29 H 0.09 0.37 7.81 -51.93 -0.41 -0.03 16 30 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.22 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.33 7.86 -51.93 -0.41 -0.08 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 4.11 8.70 -40.82 -0.36 3.75 16 37 H 0.07 1.45 7.09 -51.93 -0.37 1.08 16 38 H 0.09 2.01 8.02 -51.93 -0.42 1.59 16 39 H 0.05 0.77 7.54 -51.93 -0.39 0.38 16 40 H 0.03 0.45 7.62 -51.93 -0.40 0.05 16 41 H 0.37 3.53 9.12 45.56 0.42 3.95 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.95 6.56 -51.93 -0.34 1.61 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.05 1.19 8.10 -51.93 -0.42 0.77 16 46 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 390.09 15.07 5.88 5.88 Total: -1.00 -40.56 390.09 -7.82 -48.38 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -6.01 Total: 3.15 kcal Atomic # 6 Polarization: 14.57 SS G_CDS: -1.58 Total: 13.00 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.16 Total: -63.23 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -1.24 Total: -24.17 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -40.56 -7.82 -48.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725207421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.881 kcal (2) G-P(sol) polarization free energy of solvation -40.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds