Wall clock time and date at job start Sat Apr 11 2020 05:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00269 * 2 1 4 4 H 1.08003 * 120.00015 * 184.29765 * 3 2 1 5 5 C 1.38811 * 119.99981 * 4.29587 * 3 2 1 6 6 N 1.31624 * 119.99601 * 353.64794 * 5 3 2 7 7 Si 1.86796 * 120.00048 * 173.91765 * 5 3 2 8 8 H 1.48496 * 109.47199 * 90.00359 * 7 5 3 9 9 H 1.48505 * 109.46980 * 210.00550 * 7 5 3 10 10 H 1.48502 * 109.46977 * 330.00227 * 7 5 3 11 11 C 1.46500 * 119.99807 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47021 * 264.99163 * 11 2 1 13 13 H 1.08994 * 109.87431 * 61.37865 * 12 11 2 14 14 C 1.54317 * 109.88182 * 300.35823 * 12 11 2 15 15 C 1.55159 * 102.94244 * 218.39374 * 14 12 11 16 16 C 1.54904 * 101.58493 * 35.50009 * 15 14 12 17 17 N 1.47025 * 109.88196 * 182.54977 * 12 11 2 18 18 C 1.34777 * 125.64976 * 298.31302 * 17 12 11 19 19 O 1.21560 * 119.99995 * 181.06175 * 18 17 12 20 20 C 1.47774 * 119.99821 * 1.06022 * 18 17 12 21 21 C 1.40626 * 119.80520 * 349.36285 * 20 18 17 22 22 C 1.35702 * 120.92378 * 179.97438 * 21 20 18 23 23 C 1.40756 * 120.10944 * 0.02562 * 22 21 20 24 24 N 1.33658 * 120.84003 * 180.02562 * 23 22 21 25 25 C 1.31121 * 121.39541 * 179.97438 * 24 23 22 26 26 C 1.39315 * 121.77367 * 359.97438 * 25 24 23 27 27 C 1.36586 * 119.89865 * 359.97438 * 26 25 24 28 28 C 1.40886 * 118.15755 * 0.02562 * 27 26 25 29 29 C 1.38540 * 119.80323 * 169.08900 * 20 18 17 30 30 H 1.09002 * 109.47013 * 63.38564 * 1 2 3 31 31 H 1.09002 * 109.47175 * 183.38531 * 1 2 3 32 32 H 1.08998 * 109.46795 * 303.38800 * 1 2 3 33 33 H 0.97004 * 119.99577 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47249 * 24.99294 * 11 2 1 35 35 H 1.08997 * 109.47158 * 144.99039 * 11 2 1 36 36 H 1.09003 * 110.72239 * 336.75203 * 14 12 11 37 37 H 1.08995 * 110.72477 * 100.02807 * 14 12 11 38 38 H 1.09004 * 111.00740 * 153.58056 * 15 14 12 39 39 H 1.09011 * 111.00137 * 277.38581 * 15 14 12 40 40 H 1.09004 * 110.36792 * 81.83076 * 16 15 14 41 41 H 1.08994 * 110.37321 * 204.04434 * 16 15 14 42 42 H 1.08001 * 119.53801 * 359.97438 * 21 20 18 43 43 H 1.08001 * 119.94677 * 180.02562 * 22 21 20 44 44 H 1.07992 * 119.11307 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.05045 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.91833 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.30255 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2275 1.1871 -0.0701 5 6 1.4587 2.3864 0.0900 6 7 0.1431 2.3930 0.0494 7 14 2.3960 3.9930 0.2613 8 1 2.6823 4.5453 -1.0871 9 1 1.5771 4.9643 1.0304 10 1 3.6737 3.7469 0.9769 11 6 2.1975 -1.2688 -0.0006 12 6 2.5615 -1.6481 1.4363 13 1 1.6543 -1.7802 2.0258 14 6 3.4395 -0.5451 2.0639 15 6 4.4643 -1.3524 2.9037 16 6 4.6773 -2.6037 2.0157 17 7 3.3498 -2.8891 1.4413 18 6 2.9285 -4.0892 0.9956 19 8 3.6622 -5.0558 1.0665 20 6 1.5744 -4.2300 0.4207 21 6 0.6506 -3.1767 0.5418 22 6 -0.5985 -3.2814 0.0220 23 6 -0.9877 -4.4555 -0.6496 24 7 -2.2141 -4.5742 -1.1676 25 6 -2.5880 -5.6627 -1.7958 26 6 -1.7299 -6.7484 -1.9563 27 6 -0.4615 -6.6941 -1.4524 28 6 -0.0636 -5.5228 -0.7781 29 6 1.2245 -5.3967 -0.2395 30 1 -0.3633 0.4604 -0.9188 31 1 -0.3633 -1.0259 0.0607 32 1 -0.3633 0.5655 0.8581 33 1 -0.3399 3.2318 0.1127 34 1 1.5725 -2.0489 -0.4351 35 1 3.1081 -1.1623 -0.5901 36 1 3.9450 0.0325 1.2899 37 1 2.8431 0.1050 2.7040 38 1 5.3941 -0.7967 3.0253 39 1 4.0460 -1.6266 3.8724 40 1 5.3951 -2.3892 1.2239 41 1 5.0197 -3.4438 2.6198 42 1 0.9394 -2.2717 1.0557 43 1 -1.2952 -2.4625 0.1239 44 1 -3.5877 -5.7188 -2.2003 45 1 -2.0670 -7.6317 -2.4783 46 1 0.2172 -7.5263 -1.5670 47 1 1.9364 -6.2031 -0.3352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733935485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:38 Heat of formation + Delta-G solvation = 109.227711 kcal Electronic energy + Delta-G solvation = -30327.584711 eV Core-core repulsion = 26478.553409 eV Total energy + Delta-G solvation = -3849.031302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.21033 -40.05613 -37.65807 -36.95629 -35.25971 -33.56210 -32.32765 -31.50061 -30.20508 -30.05560 -29.00126 -26.09462 -25.64095 -24.90983 -23.81524 -22.76259 -22.03952 -21.22816 -20.51922 -19.46374 -18.58426 -17.21882 -17.00478 -16.78553 -15.85820 -15.84155 -15.18614 -14.92360 -14.73460 -14.49397 -14.16112 -13.93824 -13.92786 -13.41351 -13.33498 -13.11713 -13.01306 -12.80941 -12.50922 -12.24452 -12.10146 -11.84155 -11.63186 -11.31159 -11.12302 -10.87998 -10.80376 -10.79549 -10.64435 -10.38442 -10.26060 -10.11190 -9.90907 -9.83031 -9.65071 -9.49607 -8.70863 -8.61028 -8.41505 -8.16644 -6.99669 -5.69997 -3.14297 0.22800 0.69831 1.90545 2.49620 3.09768 3.34083 3.39484 3.40237 3.41864 4.13732 4.24839 4.38908 4.52102 4.56921 4.65259 4.78719 4.88102 4.96912 5.03986 5.08419 5.20576 5.24673 5.35047 5.43520 5.52516 5.55307 5.64847 5.72835 5.75940 5.82213 5.88795 5.97783 6.03168 6.07650 6.12898 6.24049 6.31527 6.39274 6.46885 6.48260 6.53875 6.70023 6.73388 6.80011 6.81704 7.58696 7.63423 7.70464 7.88263 7.89029 8.27578 8.30919 9.18812 9.80244 10.22486 11.27730 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.004237 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.016431 B = 6606.316334 C = 8765.512280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.154 3.846 2 N -0.602 5.602 3 C -0.247 4.247 4 H 0.076 0.924 5 C 0.000 4.000 6 N -0.913 5.913 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.121 3.879 12 C 0.090 3.910 13 H 0.082 0.918 14 C -0.104 4.104 15 C -0.140 4.140 16 C 0.108 3.892 17 N -0.602 5.602 18 C 0.574 3.426 19 O -0.552 6.552 20 C -0.131 4.131 21 C -0.099 4.099 22 C -0.111 4.111 23 C 0.150 3.850 24 N -0.475 5.475 25 C 0.136 3.864 26 C -0.188 4.188 27 C -0.046 4.046 28 C -0.122 4.122 29 C -0.031 4.031 30 H 0.035 0.965 31 H 0.003 0.997 32 H 0.055 0.945 33 H 0.250 0.750 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.185 0.815 43 H 0.148 0.852 44 H 0.158 0.842 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -15.072 0.975 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.325 5.325 3 C -0.376 4.376 4 H 0.094 0.906 5 C -0.197 4.197 6 N -0.560 5.560 7 Si 0.734 3.266 8 H -0.217 1.217 9 H -0.217 1.217 10 H -0.206 1.206 11 C -0.008 4.008 12 C -0.016 4.016 13 H 0.100 0.900 14 C -0.142 4.142 15 C -0.178 4.178 16 C -0.014 4.014 17 N -0.335 5.335 18 C 0.364 3.636 19 O -0.432 6.432 20 C -0.134 4.134 21 C -0.118 4.118 22 C -0.129 4.129 23 C 0.028 3.972 24 N -0.183 5.183 25 C -0.037 4.037 26 C -0.208 4.208 27 C -0.072 4.072 28 C -0.124 4.124 29 C -0.051 4.051 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.201 0.799 43 H 0.165 0.835 44 H 0.175 0.825 45 H 0.154 0.846 46 H 0.156 0.844 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.197 -14.672 1.133 14.717 hybrid contribution 0.945 0.294 -0.165 1.004 sum 0.748 -14.378 0.968 14.430 Atomic orbital electron populations 1.21390 0.81305 0.93946 1.02348 1.43990 1.02397 1.00005 1.86102 1.19266 0.90932 0.83439 1.43927 0.90644 1.24842 0.95608 0.97736 1.01473 1.70225 1.04983 1.24780 1.56049 0.86259 0.78770 0.83859 0.77695 1.21670 1.21654 1.20593 1.21860 0.96986 0.89706 0.92233 1.23168 0.93984 0.82733 1.01679 0.90024 1.22584 0.96283 0.96010 0.99336 1.22892 1.00603 0.95923 0.98424 1.22204 0.84726 0.97853 0.96619 1.48556 1.15954 1.08472 1.60525 1.17837 0.86266 0.81614 0.77840 1.90730 1.56901 1.37759 1.57774 1.19872 0.94555 0.95874 1.03094 1.22838 0.92345 0.99531 0.97064 1.20901 0.96843 0.96601 0.98563 1.19104 0.89100 0.93647 0.95313 1.68110 1.16262 1.24723 1.09161 1.23014 0.99622 0.88206 0.92890 1.21838 0.95081 1.00815 1.03103 1.21503 0.96218 0.96204 0.93289 1.18754 0.95404 0.95930 1.02314 1.21342 0.94271 0.96579 0.92939 0.94649 0.97876 0.92643 0.93879 0.91376 0.93352 0.89312 0.89683 0.90103 0.91146 0.91460 0.90781 0.79917 0.83450 0.82480 0.84618 0.84381 0.84136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 3.51 8.80 59.85 0.53 4.03 16 2 N -0.60 -13.53 2.87 -181.11 -0.52 -14.05 16 3 C -0.25 -6.09 8.27 -15.06 -0.12 -6.21 16 4 H 0.08 1.81 6.57 -52.48 -0.34 1.46 16 5 C 0.00 0.00 5.45 -17.43 -0.09 -0.09 16 6 N -0.91 -24.91 9.45 55.49 0.52 -24.38 16 7 Si 0.90 20.70 29.56 -169.99 -5.02 15.68 16 8 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 C 0.12 2.28 4.39 -4.04 -0.02 2.26 16 12 C 0.09 1.47 2.43 -66.95 -0.16 1.31 16 13 H 0.08 1.36 6.06 -51.93 -0.31 1.05 16 14 C -0.10 -1.64 5.32 -24.90 -0.13 -1.78 16 15 C -0.14 -1.76 7.08 -24.58 -0.17 -1.93 16 16 C 0.11 1.49 6.91 -2.53 -0.02 1.47 16 17 N -0.60 -9.52 3.06 -165.88 -0.51 -10.03 16 18 C 0.57 9.74 7.64 -12.36 -0.09 9.64 16 19 O -0.55 -10.40 16.61 5.31 0.09 -10.31 16 20 C -0.13 -2.07 5.46 -104.99 -0.57 -2.65 16 21 C -0.10 -1.58 5.33 -39.59 -0.21 -1.79 16 22 C -0.11 -1.77 8.97 -39.54 -0.35 -2.12 16 23 C 0.15 2.31 6.61 -84.78 -0.56 1.75 16 24 N -0.47 -6.98 10.33 -10.92 -0.11 -7.10 16 25 C 0.14 1.49 11.15 -17.45 -0.19 1.29 16 26 C -0.19 -1.75 10.03 -39.78 -0.40 -2.15 16 27 C -0.05 -0.49 9.89 -39.18 -0.39 -0.88 16 28 C -0.12 -1.68 5.74 -106.82 -0.61 -2.29 16 29 C -0.03 -0.45 9.34 -38.74 -0.36 -0.81 16 30 H 0.03 0.91 7.34 -51.93 -0.38 0.53 16 31 H 0.00 0.06 3.37 -51.93 -0.17 -0.12 16 32 H 0.06 1.38 6.72 -51.93 -0.35 1.03 16 33 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.07 1.27 3.79 -59.04 -0.22 1.05 16 35 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 36 H 0.09 1.54 5.99 -51.93 -0.31 1.23 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.99 8.03 -51.93 -0.42 0.57 16 42 H 0.18 3.05 1.57 -54.83 -0.09 2.96 16 43 H 0.15 2.37 6.43 -52.49 -0.34 2.03 16 44 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 46 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.14 1.82 7.66 -52.49 -0.40 1.41 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -30.07 358.66 -9.95 -40.02 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.86 Total: 5.72 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -3.95 Total: -0.95 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.62 Total: -55.56 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.07 -9.95 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733935485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.250 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds