Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36937 * 120.00269 * 2 1 4 4 H 1.08003 * 120.00015 * 184.29765 * 3 2 1 5 5 C 1.38811 * 119.99981 * 4.29587 * 3 2 1 6 6 N 1.31624 * 119.99601 * 353.64794 * 5 3 2 7 7 Si 1.86796 * 120.00048 * 173.91765 * 5 3 2 8 8 H 1.48496 * 109.47199 * 90.00359 * 7 5 3 9 9 H 1.48505 * 109.46980 * 210.00550 * 7 5 3 10 10 H 1.48502 * 109.46977 * 330.00227 * 7 5 3 11 11 C 1.46500 * 119.99807 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47021 * 264.99163 * 11 2 1 13 13 H 1.08994 * 109.87431 * 61.37865 * 12 11 2 14 14 C 1.54317 * 109.88182 * 300.35823 * 12 11 2 15 15 C 1.55159 * 102.94244 * 218.39374 * 14 12 11 16 16 C 1.54904 * 101.58493 * 35.50009 * 15 14 12 17 17 N 1.47025 * 109.88196 * 182.54977 * 12 11 2 18 18 C 1.34777 * 125.64976 * 298.31302 * 17 12 11 19 19 O 1.21560 * 119.99995 * 181.06175 * 18 17 12 20 20 C 1.47774 * 119.99821 * 1.06022 * 18 17 12 21 21 C 1.40626 * 119.80520 * 349.36285 * 20 18 17 22 22 C 1.35702 * 120.92378 * 179.97438 * 21 20 18 23 23 C 1.40756 * 120.10944 * 0.02562 * 22 21 20 24 24 N 1.33658 * 120.84003 * 180.02562 * 23 22 21 25 25 C 1.31121 * 121.39541 * 179.97438 * 24 23 22 26 26 C 1.39315 * 121.77367 * 359.97438 * 25 24 23 27 27 C 1.36586 * 119.89865 * 359.97438 * 26 25 24 28 28 C 1.40886 * 118.15755 * 0.02562 * 27 26 25 29 29 C 1.38540 * 119.80323 * 169.08900 * 20 18 17 30 30 H 1.09002 * 109.47013 * 63.38564 * 1 2 3 31 31 H 1.09002 * 109.47175 * 183.38531 * 1 2 3 32 32 H 1.08998 * 109.46795 * 303.38800 * 1 2 3 33 33 H 0.97004 * 119.99577 * 179.97438 * 6 5 3 34 34 H 1.09002 * 109.47249 * 24.99294 * 11 2 1 35 35 H 1.08997 * 109.47158 * 144.99039 * 11 2 1 36 36 H 1.09003 * 110.72239 * 336.75203 * 14 12 11 37 37 H 1.08995 * 110.72477 * 100.02807 * 14 12 11 38 38 H 1.09004 * 111.00740 * 153.58056 * 15 14 12 39 39 H 1.09011 * 111.00137 * 277.38581 * 15 14 12 40 40 H 1.09004 * 110.36792 * 81.83076 * 16 15 14 41 41 H 1.08994 * 110.37321 * 204.04434 * 16 15 14 42 42 H 1.08001 * 119.53801 * 359.97438 * 21 20 18 43 43 H 1.08001 * 119.94677 * 180.02562 * 22 21 20 44 44 H 1.07992 * 119.11307 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.05045 * 179.97438 * 26 25 24 46 46 H 1.08000 * 120.91833 * 179.97438 * 27 26 25 47 47 H 1.08000 * 120.30255 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2275 1.1871 -0.0701 5 6 1.4587 2.3864 0.0900 6 7 0.1431 2.3930 0.0494 7 14 2.3960 3.9930 0.2613 8 1 2.6823 4.5453 -1.0871 9 1 1.5771 4.9643 1.0304 10 1 3.6737 3.7469 0.9769 11 6 2.1975 -1.2688 -0.0006 12 6 2.5615 -1.6481 1.4363 13 1 1.6543 -1.7802 2.0258 14 6 3.4395 -0.5451 2.0639 15 6 4.4643 -1.3524 2.9037 16 6 4.6773 -2.6037 2.0157 17 7 3.3498 -2.8891 1.4413 18 6 2.9285 -4.0892 0.9956 19 8 3.6622 -5.0558 1.0665 20 6 1.5744 -4.2300 0.4207 21 6 0.6506 -3.1767 0.5418 22 6 -0.5985 -3.2814 0.0220 23 6 -0.9877 -4.4555 -0.6496 24 7 -2.2141 -4.5742 -1.1676 25 6 -2.5880 -5.6627 -1.7958 26 6 -1.7299 -6.7484 -1.9563 27 6 -0.4615 -6.6941 -1.4524 28 6 -0.0636 -5.5228 -0.7781 29 6 1.2245 -5.3967 -0.2395 30 1 -0.3633 0.4604 -0.9188 31 1 -0.3633 -1.0259 0.0607 32 1 -0.3633 0.5655 0.8581 33 1 -0.3399 3.2318 0.1127 34 1 1.5725 -2.0489 -0.4351 35 1 3.1081 -1.1623 -0.5901 36 1 3.9450 0.0325 1.2899 37 1 2.8431 0.1050 2.7040 38 1 5.3941 -0.7967 3.0253 39 1 4.0460 -1.6266 3.8724 40 1 5.3951 -2.3892 1.2239 41 1 5.0197 -3.4438 2.6198 42 1 0.9394 -2.2717 1.0557 43 1 -1.2952 -2.4625 0.1239 44 1 -3.5877 -5.7188 -2.2003 45 1 -2.0670 -7.6317 -2.4783 46 1 0.2172 -7.5263 -1.5670 47 1 1.9364 -6.2031 -0.3352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733935485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = 92.432691 kcal Electronic energy + Delta-G solvation = -30328.312998 eV Core-core repulsion = 26478.553409 eV Total energy + Delta-G solvation = -3849.759589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38000 -41.18322 -39.06129 -38.08299 -36.90632 -34.57998 -33.70974 -33.00930 -31.43264 -31.16533 -30.42607 -27.97760 -27.03931 -26.04527 -25.03480 -23.93585 -23.21719 -22.69833 -21.85262 -20.70615 -19.77628 -18.80812 -18.28327 -17.87244 -17.22967 -17.01593 -16.60583 -16.21834 -16.13236 -15.57992 -15.42144 -15.23520 -15.08981 -14.92552 -14.73767 -14.56703 -14.07691 -13.98830 -13.79732 -13.60834 -13.43663 -13.10425 -12.93518 -12.85855 -12.64990 -12.56116 -12.23432 -12.12378 -12.03104 -11.93395 -11.70940 -11.62996 -11.35780 -11.24969 -11.07856 -10.57836 -10.45988 -9.91439 -9.66719 -9.27940 -8.86894 -7.67196 -5.12568 -0.80000 -0.33002 0.88266 1.36326 1.50523 1.52146 1.59788 1.86008 2.23483 2.55121 3.08246 3.18152 3.34733 3.40546 3.54252 3.62247 3.73502 3.81252 3.83719 3.95454 3.99316 4.02020 4.05804 4.22451 4.28971 4.36908 4.50023 4.53839 4.64143 4.70809 4.83476 4.87219 4.90066 4.94513 4.95858 5.05655 5.08626 5.10546 5.17310 5.23136 5.31648 5.34466 5.45854 5.50715 5.60918 5.71039 5.77490 5.91715 6.33062 6.40492 6.93673 6.98524 7.21910 7.91650 8.30606 9.29401 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011402 B = 0.004237 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2455.016431 B = 6606.316334 C = 8765.512280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.173 3.827 2 N -0.612 5.612 3 C -0.238 4.238 4 H 0.084 0.916 5 C -0.056 4.056 6 N -0.944 5.944 7 Si 0.961 3.039 8 H -0.295 1.295 9 H -0.300 1.300 10 H -0.264 1.264 11 C 0.126 3.874 12 C 0.103 3.897 13 H 0.081 0.919 14 C -0.105 4.105 15 C -0.123 4.123 16 C 0.103 3.897 17 N -0.602 5.602 18 C 0.574 3.426 19 O -0.573 6.573 20 C -0.155 4.155 21 C -0.103 4.103 22 C -0.126 4.126 23 C 0.132 3.868 24 N -0.517 5.517 25 C 0.138 3.862 26 C -0.173 4.173 27 C -0.046 4.046 28 C -0.135 4.135 29 C -0.018 4.018 30 H -0.001 1.001 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.241 0.759 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.172 0.828 43 H 0.134 0.866 44 H 0.191 0.809 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.850 -17.866 0.593 17.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.336 5.336 3 C -0.368 4.368 4 H 0.102 0.898 5 C -0.249 4.249 6 N -0.594 5.594 7 Si 0.791 3.209 8 H -0.223 1.223 9 H -0.227 1.227 10 H -0.188 1.188 11 C -0.002 4.002 12 C -0.002 4.002 13 H 0.098 0.902 14 C -0.143 4.143 15 C -0.161 4.161 16 C -0.018 4.018 17 N -0.334 5.334 18 C 0.365 3.635 19 O -0.455 6.455 20 C -0.158 4.158 21 C -0.121 4.121 22 C -0.145 4.145 23 C 0.011 3.989 24 N -0.226 5.226 25 C -0.033 4.033 26 C -0.192 4.192 27 C -0.072 4.072 28 C -0.137 4.137 29 C -0.037 4.037 30 H 0.018 0.982 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.188 0.812 43 H 0.152 0.848 44 H 0.208 0.792 45 H 0.199 0.801 46 H 0.190 0.810 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.613 -17.494 0.763 17.521 hybrid contribution 0.578 0.923 -0.183 1.105 sum 1.191 -16.571 0.580 16.623 Atomic orbital electron populations 1.21029 0.81817 0.94956 0.99331 1.44102 1.02318 1.00877 1.86259 1.19586 0.91379 0.84100 1.41726 0.89847 1.25516 0.96297 1.00526 1.02556 1.70438 1.06245 1.24604 1.58104 0.85342 0.78153 0.80354 0.77082 1.22310 1.22652 1.18806 1.21903 0.96189 0.88294 0.93772 1.22783 0.94396 0.83483 0.99545 0.90220 1.22487 0.96809 0.95740 0.99250 1.22848 1.00609 0.94696 0.97937 1.22396 0.83714 0.98663 0.97061 1.48565 1.16661 1.07844 1.60335 1.18006 0.86485 0.81525 0.77494 1.90704 1.57612 1.38300 1.58920 1.19836 0.94163 0.96786 1.05013 1.22595 0.92609 0.99409 0.97508 1.20834 0.96730 0.97150 0.99748 1.19187 0.90095 0.93876 0.95719 1.68123 1.16240 1.27025 1.11168 1.23775 1.01307 0.87485 0.90765 1.22328 0.93976 1.01429 1.01506 1.21951 0.97462 0.95729 0.92035 1.18969 0.94836 0.96914 1.03011 1.21562 0.94709 0.96082 0.91383 0.98223 0.94861 0.95115 0.94867 0.90953 0.94237 0.90858 0.90859 0.87667 0.90001 0.90934 0.89988 0.81161 0.84801 0.79179 0.80096 0.80967 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.33 8.80 127.77 1.12 9.45 16 2 N -0.61 -28.45 2.87 -726.92 -2.09 -30.54 16 3 C -0.24 -11.99 8.27 84.03 0.70 -11.29 16 4 H 0.08 4.00 6.57 -2.91 -0.02 3.98 16 5 C -0.06 -2.97 5.45 84.86 0.46 -2.51 16 6 N -0.94 -53.79 9.45 21.65 0.20 -53.58 16 7 Si 0.96 43.34 29.56 68.60 2.03 45.36 16 8 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 9 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 C 0.13 4.84 4.39 86.38 0.38 5.22 16 12 C 0.10 3.42 2.43 45.34 0.11 3.53 16 13 H 0.08 2.73 6.06 -2.39 -0.01 2.72 16 14 C -0.10 -3.26 5.32 31.78 0.17 -3.09 16 15 C -0.12 -2.83 7.08 31.98 0.23 -2.60 16 16 C 0.10 2.67 6.91 86.85 0.60 3.27 16 17 N -0.60 -18.73 3.06 -796.99 -2.44 -21.18 16 18 C 0.57 19.23 7.64 86.77 0.66 19.89 16 19 O -0.57 -21.12 16.61 -3.90 -0.06 -21.18 16 20 C -0.16 -4.90 5.46 -20.10 -0.11 -5.01 16 21 C -0.10 -3.37 5.33 22.26 0.12 -3.25 16 22 C -0.13 -4.19 8.97 22.30 0.20 -3.99 16 23 C 0.13 4.06 6.61 40.35 0.27 4.32 16 24 N -0.52 -14.78 10.33 -188.46 -1.95 -16.73 16 25 C 0.14 2.62 11.15 85.06 0.95 3.57 16 26 C -0.17 -2.43 10.03 22.14 0.22 -2.21 16 27 C -0.05 -0.80 9.89 22.53 0.22 -0.58 16 28 C -0.14 -3.50 5.74 -21.29 -0.12 -3.63 16 29 C -0.02 -0.48 9.34 22.82 0.21 -0.27 16 30 H 0.00 -0.04 7.34 -2.39 -0.02 -0.06 16 31 H 0.03 1.38 3.37 -2.39 -0.01 1.37 16 32 H 0.03 1.62 6.72 -2.39 -0.02 1.60 16 33 H 0.24 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.07 2.78 3.79 -9.06 -0.03 2.75 16 35 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 36 H 0.07 2.51 5.99 -2.39 -0.01 2.49 16 37 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.08 2.03 8.03 -2.39 -0.02 2.01 16 42 H 0.17 5.92 1.57 -5.11 -0.01 5.91 16 43 H 0.13 4.64 6.43 -2.91 -0.02 4.62 16 44 H 0.19 2.15 8.06 -2.91 -0.02 2.13 16 45 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 47 H 0.16 3.70 7.66 -2.91 -0.02 3.68 16 Total: -1.00 -68.20 358.66 3.07 -65.13 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.99 Total: 21.90 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.39 Total: 10.81 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -6.27 Total: -122.03 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.20 3.07 -65.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733935485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.563 kcal (2) G-P(sol) polarization free energy of solvation -68.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds