Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36937 * 119.99961 * 2 1 4 4 H 1.07996 * 119.99314 * 146.38666 * 3 2 1 5 5 C 1.38811 * 119.99979 * 326.66479 * 3 2 1 6 6 N 1.31620 * 120.00230 * 4.39640 * 5 3 2 7 7 Si 1.86800 * 119.99666 * 184.39302 * 5 3 2 8 8 H 1.48499 * 109.47378 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46937 * 120.00421 * 7 5 3 10 10 H 1.48501 * 109.46759 * 239.99916 * 7 5 3 11 11 C 1.46501 * 119.99601 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46947 * 278.36925 * 11 2 1 13 13 H 1.08998 * 109.87434 * 64.92631 * 12 11 2 14 14 C 1.54319 * 109.88369 * 185.95021 * 12 11 2 15 15 C 1.55156 * 102.94589 * 141.60800 * 14 12 11 16 16 C 1.54910 * 101.58152 * 324.49743 * 15 14 12 17 17 N 1.47027 * 109.88315 * 303.75659 * 12 11 2 18 18 C 1.34777 * 125.64641 * 61.61738 * 17 12 11 19 19 O 1.21563 * 120.00391 * 7.07255 * 18 17 12 20 20 C 1.47771 * 119.99802 * 187.06932 * 18 17 12 21 21 C 1.40635 * 119.80543 * 11.16385 * 20 18 17 22 22 C 1.35693 * 120.92217 * 179.72439 * 21 20 18 23 23 C 1.40769 * 120.11090 * 0.57300 * 22 21 20 24 24 N 1.33643 * 120.82881 * 179.66721 * 23 22 21 25 25 C 1.31121 * 121.39565 * 180.02562 * 24 23 22 26 26 C 1.39318 * 121.76490 * 0.02562 * 25 24 23 27 27 C 1.36578 * 119.90558 * 359.97438 * 26 25 24 28 28 C 1.40886 * 118.15802 * 0.04139 * 27 26 25 29 29 C 1.38549 * 119.80532 * 191.43776 * 20 18 17 30 30 H 1.08991 * 109.47108 * 85.27668 * 1 2 3 31 31 H 1.08997 * 109.46701 * 205.27717 * 1 2 3 32 32 H 1.09003 * 109.46923 * 325.27461 * 1 2 3 33 33 H 0.96998 * 120.00139 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.47747 * 38.36816 * 11 2 1 35 35 H 1.09000 * 109.46638 * 158.37733 * 11 2 1 36 36 H 1.08997 * 110.72202 * 259.97372 * 14 12 11 37 37 H 1.08997 * 110.72367 * 23.06730 * 14 12 11 38 38 H 1.09002 * 111.00399 * 82.57404 * 15 14 12 39 39 H 1.08997 * 111.00850 * 206.41773 * 15 14 12 40 40 H 1.09000 * 110.36777 * 155.84171 * 16 15 14 41 41 H 1.08999 * 110.36780 * 278.17085 * 16 15 14 42 42 H 1.08001 * 119.53686 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.94969 * 180.25999 * 22 21 20 44 44 H 1.07998 * 119.11857 * 179.97438 * 25 24 23 45 45 H 1.07998 * 120.04579 * 180.02562 * 26 25 24 46 46 H 1.07998 * 120.92062 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.29303 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.0943 1.2640 0.5178 5 6 1.6270 2.2892 -0.6606 6 7 0.4343 2.2212 -1.2131 7 14 2.6162 3.8702 -0.7654 8 1 3.9155 3.6883 -0.0697 9 1 2.8614 4.2072 -2.1907 10 1 1.8583 4.9720 -0.1196 11 6 2.1975 -1.2688 -0.0006 12 6 2.2706 -1.8160 1.4264 13 1 1.2698 -2.0637 1.7800 14 6 3.1656 -3.0727 1.4613 15 6 3.9291 -2.9185 2.8031 16 6 4.1257 -1.3836 2.8745 17 7 2.8850 -0.8178 2.3139 18 6 2.3955 0.4111 2.5718 19 8 1.2982 0.7280 2.1555 20 6 3.1926 1.3734 3.3606 21 6 4.5435 1.0992 3.6396 22 6 5.2979 1.9694 4.3570 23 6 4.7294 3.1612 4.8449 24 7 5.4574 4.0252 5.5587 25 6 4.9391 5.1383 6.0189 26 6 3.6074 5.4770 5.7893 27 6 2.8063 4.6391 5.0672 28 6 3.3668 3.4440 4.5747 29 6 2.6032 2.5377 3.8260 30 1 -0.3633 0.0846 -1.0241 31 1 -0.3632 -0.9293 0.4388 32 1 -0.3633 0.8447 0.5854 33 1 0.0691 2.9921 -1.6751 34 1 1.6814 -1.9860 -0.6387 35 1 3.2065 -1.1056 -0.3792 36 1 2.5589 -3.9783 1.4647 37 1 3.8575 -3.0770 0.6191 38 1 3.3265 -3.2745 3.6387 39 1 4.8888 -3.4341 2.7682 40 1 4.2541 -1.0652 3.9090 41 1 4.9846 -1.0828 2.2747 42 1 4.9879 0.1854 3.2734 43 1 6.3349 1.7450 4.5585 44 1 5.5610 5.8100 6.5919 45 1 3.2093 6.4013 6.1812 46 1 1.7716 4.8853 4.8797 47 1 1.5643 2.7444 3.6150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733935486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = 77.258085 kcal Electronic energy + Delta-G solvation = -30824.109159 eV Core-core repulsion = 26973.691549 eV Total energy + Delta-G solvation = -3850.417609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97127 -40.99375 -38.42126 -37.68924 -36.74900 -34.52147 -33.49849 -32.71883 -31.36031 -30.99827 -30.49372 -27.86033 -26.77079 -26.02991 -24.95989 -23.91304 -23.23182 -22.45655 -21.86929 -20.19135 -19.47072 -18.85155 -18.18339 -17.74603 -17.19536 -16.87489 -16.63423 -16.03840 -15.63726 -15.58407 -15.40805 -15.09495 -14.97481 -14.90626 -14.53095 -14.29405 -14.03499 -13.86897 -13.60716 -13.43565 -13.32720 -13.05064 -12.96283 -12.82210 -12.61778 -12.51455 -12.35979 -12.30612 -11.94326 -11.84728 -11.63348 -11.62285 -11.46504 -11.44067 -10.55874 -10.51641 -10.44383 -9.78438 -9.48817 -9.24155 -8.22940 -7.69480 -5.20000 -0.74524 -0.31209 0.89663 1.31546 1.33244 1.41154 1.59723 2.24836 2.49589 2.60284 3.11229 3.28837 3.44064 3.56078 3.61213 3.68519 3.79214 3.88239 3.95789 4.04195 4.10809 4.12252 4.18269 4.32838 4.40546 4.50491 4.56946 4.62966 4.76215 4.77630 4.87329 4.90592 4.94449 4.96899 5.03824 5.06048 5.08084 5.21369 5.23317 5.27749 5.32148 5.48984 5.49922 5.53619 5.71461 5.75045 5.79471 5.91965 6.48607 6.85452 6.90855 7.30685 7.70066 8.01548 8.50935 9.32410 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010036 B = 0.005455 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.227726 B = 5131.644085 C = 7068.681777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.208 3.792 2 N -0.597 5.597 3 C -0.183 4.183 4 H 0.047 0.953 5 C -0.052 4.052 6 N -0.940 5.940 7 Si 0.935 3.065 8 H -0.275 1.275 9 H -0.290 1.290 10 H -0.299 1.299 11 C 0.138 3.862 12 C 0.118 3.882 13 H 0.041 0.959 14 C -0.116 4.116 15 C -0.118 4.118 16 C 0.081 3.919 17 N -0.613 5.613 18 C 0.549 3.451 19 O -0.505 6.505 20 C -0.126 4.126 21 C -0.104 4.104 22 C -0.102 4.102 23 C 0.117 3.883 24 N -0.499 5.499 25 C 0.135 3.865 26 C -0.168 4.168 27 C -0.067 4.067 28 C -0.128 4.128 29 C -0.054 4.054 30 H -0.008 1.008 31 H 0.002 0.998 32 H 0.009 0.991 33 H 0.239 0.761 34 H 0.047 0.953 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.180 0.820 43 H 0.163 0.837 44 H 0.200 0.800 45 H 0.177 0.823 46 H 0.149 0.851 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.940 -4.975 16.164 20.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.320 5.320 3 C -0.314 4.314 4 H 0.065 0.935 5 C -0.245 4.245 6 N -0.589 5.589 7 Si 0.766 3.234 8 H -0.200 1.200 9 H -0.217 1.217 10 H -0.227 1.227 11 C 0.012 3.988 12 C 0.012 3.988 13 H 0.059 0.941 14 C -0.154 4.154 15 C -0.156 4.156 16 C -0.041 4.041 17 N -0.349 5.349 18 C 0.337 3.663 19 O -0.378 6.378 20 C -0.129 4.129 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.004 4.004 24 N -0.207 5.207 25 C -0.037 4.037 26 C -0.188 4.188 27 C -0.093 4.093 28 C -0.130 4.130 29 C -0.074 4.074 30 H 0.010 0.990 31 H 0.020 0.980 32 H 0.028 0.972 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.197 0.803 43 H 0.180 0.820 44 H 0.216 0.784 45 H 0.195 0.805 46 H 0.167 0.833 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.087 -4.911 15.962 20.615 hybrid contribution -1.307 1.647 -0.746 2.231 sum 10.780 -3.265 15.215 18.931 Atomic orbital electron populations 1.20162 0.83854 0.94409 0.95254 1.43754 1.01357 1.01172 1.85685 1.18862 1.01546 0.89350 1.21662 0.93535 1.25711 0.97919 1.01109 0.99764 1.70184 1.17245 1.29297 1.42221 0.85631 0.78889 0.81888 0.76978 1.20015 1.21652 1.22689 1.21362 0.95777 0.87350 0.94360 1.22316 0.96355 0.88657 0.91466 0.94116 1.22631 0.98418 0.95228 0.99145 1.22792 1.02377 0.93356 0.97064 1.22960 0.86802 0.95117 0.99215 1.48136 1.25832 1.13634 1.47303 1.17856 0.86479 0.81293 0.80636 1.90913 1.21857 1.76361 1.48704 1.20201 0.95813 0.96252 1.00678 1.22239 0.91960 1.01687 0.96381 1.20978 1.01314 0.91649 0.98075 1.19271 0.89637 0.95539 0.95961 1.68107 1.37699 1.04388 1.10535 1.23750 0.93833 0.92425 0.93712 1.22297 0.95027 1.01927 0.99515 1.21877 1.01513 0.91788 0.94131 1.18998 0.95434 0.97268 1.01336 1.21396 0.99718 0.92338 0.93970 0.99033 0.97998 0.97175 0.95106 0.93512 0.93192 0.88787 0.89571 0.90445 0.86762 0.89110 0.90260 0.80322 0.81994 0.78363 0.80514 0.83279 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 11.71 7.83 127.77 1.00 12.71 16 2 N -0.60 -31.82 1.68 -726.94 -1.22 -33.05 16 3 C -0.18 -10.57 6.23 84.03 0.52 -10.04 16 4 H 0.05 2.71 6.50 -2.91 -0.02 2.69 16 5 C -0.05 -3.16 5.38 84.86 0.46 -2.71 16 6 N -0.94 -60.63 10.60 21.65 0.23 -60.40 16 7 Si 0.94 49.57 29.56 68.60 2.03 51.60 16 8 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 9 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 10 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 11 C 0.14 5.71 5.28 86.38 0.46 6.17 16 12 C 0.12 3.93 3.29 45.34 0.15 4.08 16 13 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 14 C -0.12 -2.38 6.48 31.78 0.21 -2.17 16 15 C -0.12 -1.88 7.09 31.99 0.23 -1.65 16 16 C 0.08 1.77 4.88 86.86 0.42 2.20 16 17 N -0.61 -20.98 3.07 -791.50 -2.43 -23.40 16 18 C 0.55 23.38 4.99 86.76 0.43 23.82 16 19 O -0.50 -26.61 10.50 -3.91 -0.04 -26.65 16 20 C -0.13 -4.75 5.83 -20.10 -0.12 -4.86 16 21 C -0.10 -3.03 8.14 22.27 0.18 -2.85 16 22 C -0.10 -2.80 9.95 22.30 0.22 -2.58 16 23 C 0.12 3.58 6.61 40.36 0.27 3.85 16 24 N -0.50 -13.45 10.33 -188.45 -1.95 -15.39 16 25 C 0.14 2.68 11.15 85.06 0.95 3.63 16 26 C -0.17 -3.21 10.03 22.14 0.22 -2.98 16 27 C -0.07 -1.75 9.89 22.53 0.22 -1.53 16 28 C -0.13 -4.20 5.74 -21.29 -0.12 -4.32 16 29 C -0.05 -2.07 9.34 22.82 0.21 -1.86 16 30 H -0.01 -0.52 7.27 -2.39 -0.02 -0.53 16 31 H 0.00 0.08 8.03 -2.39 -0.02 0.06 16 32 H 0.01 0.61 6.66 -2.39 -0.02 0.59 16 33 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 35 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.64 7.79 -2.39 -0.02 1.62 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.78 6.20 -2.39 -0.01 1.76 16 41 H 0.08 1.58 7.16 -2.39 -0.02 1.57 16 42 H 0.18 4.14 3.41 -2.91 -0.01 4.13 16 43 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.20 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 47 H 0.12 4.95 7.66 -2.91 -0.02 4.93 16 Total: -1.00 -83.87 364.98 3.52 -80.35 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 0.99 Total: 8.07 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 5.91 Total: 18.88 kcal Atomic # 7 Polarization: -126.88 SS G_CDS: -5.37 Total: -132.24 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.04 Total: -26.65 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.03 Total: 51.60 kcal Total: -83.87 3.52 -80.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733935486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.608 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds