Wall clock time and date at job start Sat Apr 11 2020 05:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00334 * 2 1 4 4 O 1.21606 * 119.99690 * 184.78581 * 3 2 1 5 5 C 1.47440 * 120.00152 * 4.78384 * 3 2 1 6 6 C 1.38951 * 121.17169 * 314.46514 * 5 3 2 7 7 N 1.32199 * 121.31829 * 179.72862 * 6 5 3 8 8 C 1.31193 * 123.69435 * 0.58931 * 7 6 5 9 9 C 1.40380 * 120.91782 * 359.68061 * 8 7 6 10 10 C 1.40394 * 122.14250 * 179.97438 * 9 8 7 11 11 C 1.36234 * 119.48466 * 180.02562 * 10 9 8 12 12 C 1.39291 * 121.10451 * 0.03830 * 11 10 9 13 13 C 1.36435 * 120.95043 * 0.02562 * 12 11 10 14 14 C 1.39694 * 119.43649 * 359.97104 * 13 12 11 15 15 C 1.46507 * 119.99598 * 179.97438 * 2 1 3 16 16 H 1.08996 * 109.46782 * 180.02562 * 15 2 1 17 17 C 1.53003 * 109.47056 * 300.00236 * 15 2 1 18 18 N 1.46503 * 109.46875 * 305.00125 * 17 15 2 19 19 C 1.36939 * 119.99817 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99844 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00105 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99895 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99947 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46961 * 90.00192 * 23 21 19 25 25 H 1.48503 * 109.47170 * 210.00100 * 23 21 19 26 26 H 1.48498 * 109.47149 * 329.99971 * 23 21 19 27 27 C 1.53002 * 109.47153 * 59.99950 * 15 2 1 28 28 C 1.52996 * 117.49992 * 248.74503 * 27 15 2 29 29 C 1.52995 * 117.49730 * 180.08530 * 27 15 2 30 30 H 1.09008 * 109.47076 * 95.24711 * 1 2 3 31 31 H 1.08999 * 109.46895 * 335.25078 * 1 2 3 32 32 H 1.09001 * 109.47927 * 215.24812 * 1 2 3 33 33 H 1.08004 * 119.33817 * 0.02562 * 6 5 3 34 34 H 1.08009 * 119.53910 * 179.69861 * 8 7 6 35 35 H 1.07993 * 120.25908 * 0.02562 * 10 9 8 36 36 H 1.07994 * 119.44610 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.52127 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.28447 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.47170 * 65.00030 * 17 15 2 40 40 H 1.08998 * 109.46925 * 185.00238 * 17 15 2 41 41 H 0.96992 * 120.00072 * 0.02562 * 18 17 15 42 42 H 0.96997 * 119.99904 * 180.02562 * 22 21 19 43 43 H 1.09001 * 115.54352 * 34.41793 * 27 15 2 44 44 H 1.08993 * 117.50253 * 0.02562 * 28 27 15 45 45 H 1.09007 * 117.49656 * 145.01701 * 28 27 15 46 46 H 1.09005 * 117.49953 * 214.98502 * 29 27 15 47 47 H 1.09003 * 117.50196 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1688 -0.0879 5 6 1.4057 2.4418 0.1065 6 6 0.2667 2.6820 -0.6524 7 7 -0.3960 3.8217 -0.5553 8 6 -0.0401 4.8054 0.2365 9 6 1.0952 4.6977 1.0551 10 6 1.4996 5.7341 1.9114 11 6 2.6111 5.5718 2.6823 12 6 3.3542 4.3946 2.6347 13 6 2.9904 3.3679 1.8131 14 6 1.8558 3.5010 1.0091 15 6 2.1974 -1.2688 0.0006 16 1 3.2691 -1.0697 0.0009 17 6 1.8277 -2.0706 1.2502 18 7 2.0705 -1.2553 2.4429 19 6 1.8110 -1.7669 3.6864 20 1 1.4278 -2.7716 3.7877 21 6 2.0415 -0.9947 4.8166 22 7 1.7926 -1.4867 6.0118 23 14 2.7064 0.7421 4.6414 24 1 1.5743 1.6960 4.5245 25 1 3.5201 1.0835 5.8358 26 1 3.5534 0.8275 3.4246 27 6 1.8278 -2.0717 -1.2483 28 6 1.0113 -3.3504 -1.0501 29 6 2.4911 -3.4381 -1.4317 30 1 -0.3634 -0.0940 -1.0234 31 1 -0.3633 0.9333 0.4302 32 1 -0.3635 -0.8392 0.5931 33 1 -0.0869 1.9203 -1.3316 34 1 -0.6290 5.7105 0.2590 35 1 0.9341 6.6529 1.9587 36 1 2.9215 6.3693 3.3410 37 1 4.2313 4.2934 3.2566 38 1 3.5747 2.4600 1.7845 39 1 0.7739 -2.3459 1.2066 40 1 2.4374 -2.9729 1.2965 41 1 2.4150 -0.3532 2.3519 42 1 1.9533 -0.9470 6.8015 43 1 1.6316 -1.4830 -2.1445 44 1 0.7372 -3.6195 -0.0302 45 1 0.2782 -3.6032 -1.8162 46 1 2.7311 -3.7487 -2.4486 47 1 3.1913 -3.7650 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734308881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:50 Heat of formation + Delta-G solvation = 80.632000 kcal Electronic energy + Delta-G solvation = -30343.693298 eV Core-core repulsion = 26493.421993 eV Total energy + Delta-G solvation = -3850.271306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08067 -39.75345 -37.85180 -37.45915 -35.19775 -34.27672 -32.89085 -31.42414 -31.28360 -30.02342 -28.38036 -26.86596 -25.19603 -24.15492 -23.59298 -22.77769 -22.47495 -21.75347 -20.32919 -18.95540 -18.38797 -17.58614 -17.52451 -17.13519 -16.42634 -16.08225 -15.53511 -15.22010 -14.81705 -14.61179 -14.26048 -14.15865 -13.94909 -13.87411 -13.61452 -13.44860 -13.23703 -12.72556 -12.65174 -12.39985 -12.35328 -12.02602 -11.88352 -11.69137 -11.61462 -11.38270 -11.19582 -10.89757 -10.81229 -10.51101 -10.26849 -10.09499 -10.04989 -9.83150 -9.63233 -9.39773 -9.18907 -8.93056 -8.51204 -8.18202 -7.26499 -5.80362 -3.15549 0.02651 0.77431 1.61482 2.67479 2.87859 3.10911 3.34566 3.38885 3.41060 3.88498 3.93636 4.12309 4.35839 4.44564 4.56366 4.58448 4.70508 4.75596 4.79412 4.96316 5.03584 5.05430 5.13764 5.15747 5.27287 5.38422 5.45385 5.46865 5.50303 5.61349 5.62860 5.70379 5.75978 5.82126 5.84672 5.92481 5.93501 6.01106 6.18834 6.24193 6.25437 6.30758 6.37991 6.40777 6.52875 6.71237 6.75356 7.43363 7.73405 7.94538 8.18959 8.38408 9.17296 9.90310 10.10112 11.37569 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.005733 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.294601 B = 4882.452980 C = 7028.345693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.587 5.587 3 C 0.565 3.435 4 O -0.531 6.531 5 C -0.159 4.159 6 C 0.111 3.889 7 N -0.495 5.495 8 C 0.168 3.832 9 C -0.117 4.117 10 C -0.090 4.090 11 C -0.115 4.115 12 C -0.096 4.096 13 C -0.103 4.103 14 C 0.011 3.989 15 C 0.158 3.842 16 H 0.106 0.894 17 C 0.146 3.854 18 N -0.751 5.751 19 C -0.242 4.242 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.932 5.932 23 Si 0.872 3.128 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.273 1.273 27 C -0.160 4.160 28 C -0.182 4.182 29 C -0.172 4.172 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.166 0.834 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.361 0.639 42 H 0.259 0.741 43 H 0.104 0.896 44 H 0.108 0.892 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.152 10.549 -14.905 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C 0.352 3.648 4 O -0.409 6.409 5 C -0.164 4.164 6 C -0.033 4.033 7 N -0.202 5.202 8 C -0.004 4.004 9 C -0.119 4.119 10 C -0.109 4.109 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.121 4.121 14 C 0.006 3.994 15 C 0.055 3.945 16 H 0.124 0.876 17 C 0.019 3.981 18 N -0.397 5.397 19 C -0.372 4.372 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.580 5.580 23 Si 0.702 3.298 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.199 1.199 27 C -0.179 4.179 28 C -0.219 4.219 29 C -0.209 4.209 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.180 0.820 34 H 0.183 0.817 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.160 0.840 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.194 0.806 42 H 0.069 0.931 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.300 10.308 -15.338 18.772 hybrid contribution 1.149 1.071 0.646 1.698 sum -2.151 11.379 -14.692 18.708 Atomic orbital electron populations 1.22053 0.79376 1.04402 1.01442 1.47594 1.07248 1.05209 1.71726 1.17909 0.86996 0.83165 0.76692 1.90784 1.13259 1.87026 1.49796 1.21901 0.98318 0.95263 1.00959 1.22851 0.89599 0.94347 0.96490 1.67112 1.31731 1.00978 1.20383 1.23218 0.91797 0.96701 0.88639 1.18950 0.97765 0.94920 1.00300 1.20946 0.96890 0.97781 0.95319 1.20972 0.95379 0.97796 0.99178 1.21144 0.99755 0.93108 0.97488 1.21268 0.95724 1.00344 0.94757 1.18835 0.94481 0.91719 0.94382 1.20961 0.97892 0.81998 0.93660 0.87638 1.21123 0.98656 0.93463 0.84905 1.42642 1.80041 1.14839 1.02163 1.19025 1.36563 0.99960 0.81665 0.89106 1.24622 1.01349 0.97688 0.95145 1.69693 1.54610 1.36812 0.96869 0.86721 0.79320 0.86679 0.77102 1.20938 1.21578 1.19906 1.22517 1.06050 0.90173 0.99169 1.23213 0.94045 1.01018 1.03585 1.22967 0.96216 0.99142 1.02599 0.92391 0.90849 0.89787 0.82033 0.81694 0.84587 0.85247 0.85220 0.83970 0.94566 0.94308 0.80609 0.93083 0.87770 0.87361 0.89109 0.88945 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 8.43 59.85 0.50 1.43 16 2 N -0.59 -9.38 2.24 -175.19 -0.39 -9.77 16 3 C 0.56 10.06 6.62 -12.51 -0.08 9.97 16 4 O -0.53 -10.89 14.75 5.27 0.08 -10.81 16 5 C -0.16 -2.58 5.21 -102.66 -0.54 -3.12 16 6 C 0.11 1.50 8.68 -17.13 -0.15 1.35 16 7 N -0.49 -6.46 10.22 -12.58 -0.13 -6.59 16 8 C 0.17 1.94 11.00 -17.02 -0.19 1.75 16 9 C -0.12 -1.56 5.74 -106.89 -0.61 -2.17 16 10 C -0.09 -0.97 9.82 -39.49 -0.39 -1.36 16 11 C -0.12 -1.33 9.94 -39.91 -0.40 -1.72 16 12 C -0.10 -1.37 9.96 -39.84 -0.40 -1.77 16 13 C -0.10 -1.79 9.30 -39.69 -0.37 -2.16 16 14 C 0.01 0.18 5.90 -104.74 -0.62 -0.43 16 15 C 0.16 2.56 2.59 -67.92 -0.18 2.39 16 16 H 0.11 1.95 6.91 -51.93 -0.36 1.59 16 17 C 0.15 2.77 4.12 -4.04 -0.02 2.75 16 18 N -0.75 -18.14 5.24 -59.90 -0.31 -18.45 16 19 C -0.24 -6.89 10.47 -15.06 -0.16 -7.05 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 22 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 23 Si 0.87 22.81 27.73 -169.99 -4.71 18.10 16 24 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 26 H -0.27 -6.92 6.20 56.52 0.35 -6.57 16 27 C -0.16 -2.01 5.48 -90.62 -0.50 -2.51 16 28 C -0.18 -2.05 9.59 -26.70 -0.26 -2.31 16 29 C -0.17 -1.95 9.94 -26.70 -0.27 -2.22 16 30 H 0.06 0.58 7.63 -51.92 -0.40 0.18 16 31 H 0.07 0.99 5.34 -51.93 -0.28 0.72 16 32 H 0.08 1.18 6.56 -51.93 -0.34 0.84 16 33 H 0.16 1.80 6.29 -52.48 -0.33 1.47 16 34 H 0.17 1.23 8.06 -52.48 -0.42 0.80 16 35 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.14 2.81 6.12 -52.48 -0.32 2.49 16 39 H 0.04 0.67 5.39 -51.93 -0.28 0.39 16 40 H 0.04 0.74 7.44 -51.93 -0.39 0.36 16 41 H 0.36 8.96 4.92 -40.82 -0.20 8.76 16 42 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 43 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.11 1.36 5.80 -51.93 -0.30 1.06 16 45 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.10 1.20 7.66 -51.93 -0.40 0.80 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -35.14 375.95 -9.89 -45.02 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.16 Total: 12.61 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -4.70 Total: -7.04 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -0.06 Total: -63.55 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.14 -9.89 -45.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734308881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.655 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds