Wall clock time and date at job start Sat Apr 11 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34772 * 120.00334 * 2 1 4 4 O 1.21606 * 119.99690 * 184.78581 * 3 2 1 5 5 C 1.47440 * 120.00152 * 4.78384 * 3 2 1 6 6 C 1.38951 * 121.17169 * 314.46514 * 5 3 2 7 7 N 1.32199 * 121.31829 * 179.72862 * 6 5 3 8 8 C 1.31193 * 123.69435 * 0.58931 * 7 6 5 9 9 C 1.40380 * 120.91782 * 359.68061 * 8 7 6 10 10 C 1.40394 * 122.14250 * 179.97438 * 9 8 7 11 11 C 1.36234 * 119.48466 * 180.02562 * 10 9 8 12 12 C 1.39291 * 121.10451 * 0.03830 * 11 10 9 13 13 C 1.36435 * 120.95043 * 0.02562 * 12 11 10 14 14 C 1.39694 * 119.43649 * 359.97104 * 13 12 11 15 15 C 1.46507 * 119.99598 * 179.97438 * 2 1 3 16 16 H 1.08996 * 109.46782 * 180.02562 * 15 2 1 17 17 C 1.53003 * 109.47056 * 300.00236 * 15 2 1 18 18 N 1.46503 * 109.46875 * 305.00125 * 17 15 2 19 19 C 1.36939 * 119.99817 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99844 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00105 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99895 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 119.99947 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46961 * 90.00192 * 23 21 19 25 25 H 1.48503 * 109.47170 * 210.00100 * 23 21 19 26 26 H 1.48498 * 109.47149 * 329.99971 * 23 21 19 27 27 C 1.53002 * 109.47153 * 59.99950 * 15 2 1 28 28 C 1.52996 * 117.49992 * 248.74503 * 27 15 2 29 29 C 1.52995 * 117.49730 * 180.08530 * 27 15 2 30 30 H 1.09008 * 109.47076 * 95.24711 * 1 2 3 31 31 H 1.08999 * 109.46895 * 335.25078 * 1 2 3 32 32 H 1.09001 * 109.47927 * 215.24812 * 1 2 3 33 33 H 1.08004 * 119.33817 * 0.02562 * 6 5 3 34 34 H 1.08009 * 119.53910 * 179.69861 * 8 7 6 35 35 H 1.07993 * 120.25908 * 0.02562 * 10 9 8 36 36 H 1.07994 * 119.44610 * 180.02562 * 11 10 9 37 37 H 1.07998 * 119.52127 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.28447 * 179.97438 * 13 12 11 39 39 H 1.09004 * 109.47170 * 65.00030 * 17 15 2 40 40 H 1.08998 * 109.46925 * 185.00238 * 17 15 2 41 41 H 0.96992 * 120.00072 * 0.02562 * 18 17 15 42 42 H 0.96997 * 119.99904 * 180.02562 * 22 21 19 43 43 H 1.09001 * 115.54352 * 34.41793 * 27 15 2 44 44 H 1.08993 * 117.50253 * 0.02562 * 28 27 15 45 45 H 1.09007 * 117.49656 * 145.01701 * 28 27 15 46 46 H 1.09005 * 117.49953 * 214.98502 * 29 27 15 47 47 H 1.09003 * 117.50196 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1688 -0.0879 5 6 1.4057 2.4418 0.1065 6 6 0.2667 2.6820 -0.6524 7 7 -0.3960 3.8217 -0.5553 8 6 -0.0401 4.8054 0.2365 9 6 1.0952 4.6977 1.0551 10 6 1.4996 5.7341 1.9114 11 6 2.6111 5.5718 2.6823 12 6 3.3542 4.3946 2.6347 13 6 2.9904 3.3679 1.8131 14 6 1.8558 3.5010 1.0091 15 6 2.1974 -1.2688 0.0006 16 1 3.2691 -1.0697 0.0009 17 6 1.8277 -2.0706 1.2502 18 7 2.0705 -1.2553 2.4429 19 6 1.8110 -1.7669 3.6864 20 1 1.4278 -2.7716 3.7877 21 6 2.0415 -0.9947 4.8166 22 7 1.7926 -1.4867 6.0118 23 14 2.7064 0.7421 4.6414 24 1 1.5743 1.6960 4.5245 25 1 3.5201 1.0835 5.8358 26 1 3.5534 0.8275 3.4246 27 6 1.8278 -2.0717 -1.2483 28 6 1.0113 -3.3504 -1.0501 29 6 2.4911 -3.4381 -1.4317 30 1 -0.3634 -0.0940 -1.0234 31 1 -0.3633 0.9333 0.4302 32 1 -0.3635 -0.8392 0.5931 33 1 -0.0869 1.9203 -1.3316 34 1 -0.6290 5.7105 0.2590 35 1 0.9341 6.6529 1.9587 36 1 2.9215 6.3693 3.3410 37 1 4.2313 4.2934 3.2566 38 1 3.5747 2.4600 1.7845 39 1 0.7739 -2.3459 1.2066 40 1 2.4374 -2.9729 1.2965 41 1 2.4150 -0.3532 2.3519 42 1 1.9533 -0.9470 6.8015 43 1 1.6316 -1.4830 -2.1445 44 1 0.7372 -3.6195 -0.0302 45 1 0.2782 -3.6032 -1.8162 46 1 2.7311 -3.7487 -2.4486 47 1 3.1913 -3.7650 -0.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734308881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:49 Heat of formation + Delta-G solvation = 58.211132 kcal Electronic energy + Delta-G solvation = -30344.665540 eV Core-core repulsion = 26493.421993 eV Total energy + Delta-G solvation = -3851.243547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.16364 -40.92953 -39.05327 -38.45238 -36.60261 -35.99746 -34.01071 -33.43169 -32.28228 -31.19112 -29.79371 -28.07728 -26.61391 -25.43554 -24.59621 -24.02447 -23.72489 -23.07854 -21.48015 -20.47699 -19.41996 -19.39864 -18.61422 -18.25894 -17.72750 -17.23099 -16.80705 -16.46184 -16.29460 -15.85454 -15.49080 -15.44440 -15.28666 -15.02040 -14.94747 -14.81326 -14.61734 -14.23032 -13.89739 -13.64602 -13.53133 -13.40324 -13.13932 -13.02796 -12.98602 -12.84133 -12.49251 -12.28961 -12.27912 -12.11306 -11.93850 -11.56040 -11.22236 -11.12459 -11.11168 -10.88600 -10.51296 -10.19517 -9.77650 -9.39892 -9.19984 -8.14137 -5.45461 -0.97115 -0.23310 0.57426 1.20115 1.21185 1.28887 1.44029 1.78427 2.01879 2.32869 2.89637 2.92823 3.14820 3.17099 3.35372 3.40940 3.50003 3.60766 3.76501 3.80812 3.83457 3.95826 4.05216 4.10924 4.13328 4.15121 4.19171 4.32662 4.41568 4.49820 4.54229 4.64744 4.65350 4.73903 4.82285 4.88830 4.90044 4.95432 5.01538 5.04525 5.19072 5.27459 5.32047 5.34844 5.42904 5.47381 5.65372 5.76378 6.10091 6.18941 6.75593 6.92045 6.95016 7.72095 7.89717 9.06792 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008943 B = 0.005733 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3130.294601 B = 4882.452980 C = 7028.345693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.587 5.587 3 C 0.560 3.440 4 O -0.575 6.575 5 C -0.201 4.201 6 C 0.130 3.870 7 N -0.509 5.509 8 C 0.190 3.810 9 C -0.136 4.136 10 C -0.065 4.065 11 C -0.126 4.126 12 C -0.097 4.097 13 C -0.152 4.152 14 C -0.013 4.013 15 C 0.165 3.835 16 H 0.075 0.925 17 C 0.146 3.854 18 N -0.757 5.757 19 C -0.225 4.225 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.974 5.974 23 Si 0.936 3.064 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.275 1.275 27 C -0.163 4.163 28 C -0.168 4.168 29 C -0.169 4.169 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.217 0.783 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.136 0.864 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.357 0.643 42 H 0.258 0.742 43 H 0.120 0.880 44 H 0.092 0.908 45 H 0.118 0.882 46 H 0.116 0.884 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 13.346 -16.874 22.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.317 5.317 3 C 0.349 3.651 4 O -0.456 6.456 5 C -0.206 4.206 6 C -0.013 4.013 7 N -0.217 5.217 8 C 0.019 3.981 9 C -0.138 4.138 10 C -0.084 4.084 11 C -0.143 4.143 12 C -0.116 4.116 13 C -0.171 4.171 14 C -0.018 4.018 15 C 0.062 3.938 16 H 0.093 0.907 17 C 0.019 3.981 18 N -0.402 5.402 19 C -0.356 4.356 20 H 0.088 0.912 21 C -0.244 4.244 22 N -0.624 5.624 23 Si 0.765 3.235 24 H -0.207 1.207 25 H -0.215 1.215 26 H -0.201 1.201 27 C -0.182 4.182 28 C -0.205 4.205 29 C -0.207 4.207 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.200 0.800 34 H 0.233 0.767 35 H 0.206 0.794 36 H 0.186 0.814 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.190 0.810 42 H 0.067 0.933 43 H 0.138 0.862 44 H 0.111 0.889 45 H 0.137 0.863 46 H 0.135 0.865 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.635 13.081 -17.352 22.449 hybrid contribution 1.827 0.209 1.232 2.214 sum -3.808 13.291 -16.120 21.236 Atomic orbital electron populations 1.22234 0.77565 1.03800 1.03752 1.47702 1.08353 1.04595 1.71053 1.18306 0.86663 0.84229 0.75919 1.90739 1.15197 1.87729 1.51908 1.21831 1.00226 0.94930 1.03659 1.23139 0.88057 0.94944 0.95163 1.67280 1.31782 1.01212 1.21405 1.24054 0.90609 0.97452 0.86006 1.19341 0.98286 0.94483 1.01662 1.21572 0.96005 0.98357 0.92447 1.21379 0.95383 0.97400 1.00147 1.21456 1.00179 0.93600 0.96350 1.21074 0.97418 1.00332 0.98243 1.19126 0.94783 0.93324 0.94559 1.20736 0.96466 0.82482 0.94115 0.90659 1.21320 0.99274 0.93173 0.84318 1.42739 1.79833 1.15170 1.02423 1.19062 1.34340 0.98842 0.83338 0.91231 1.25246 1.02855 1.01250 0.95055 1.69826 1.56817 1.38270 0.97533 0.85710 0.78614 0.82487 0.76673 1.20720 1.21471 1.20079 1.22366 1.07752 0.90431 0.97659 1.23229 0.94522 0.99160 1.03583 1.23061 0.96194 0.97826 1.03582 0.88377 0.91145 0.90730 0.80041 0.76711 0.79391 0.81440 0.84631 0.88165 0.93113 0.94412 0.81026 0.93254 0.86198 0.88926 0.86343 0.86544 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.73 8.43 127.77 1.08 2.80 16 2 N -0.59 -19.08 2.24 -826.43 -1.85 -20.94 16 3 C 0.56 20.90 6.62 86.67 0.57 21.47 16 4 O -0.57 -25.55 14.75 -4.05 -0.06 -25.61 16 5 C -0.20 -6.62 5.21 -18.60 -0.10 -6.72 16 6 C 0.13 3.33 8.68 84.81 0.74 4.06 16 7 N -0.51 -11.71 10.22 -193.72 -1.98 -13.69 16 8 C 0.19 3.58 11.00 85.31 0.94 4.52 16 9 C -0.14 -3.24 5.74 -21.33 -0.12 -3.36 16 10 C -0.06 -1.11 9.82 22.33 0.22 -0.89 16 11 C -0.13 -2.50 9.94 22.06 0.22 -2.28 16 12 C -0.10 -2.77 9.96 22.10 0.22 -2.55 16 13 C -0.15 -5.58 9.30 22.20 0.21 -5.37 16 14 C -0.01 -0.42 5.90 -19.94 -0.12 -0.54 16 15 C 0.17 5.52 2.59 44.99 0.12 5.63 16 16 H 0.08 2.98 6.91 -2.39 -0.02 2.96 16 17 C 0.15 5.66 4.12 86.38 0.36 6.01 16 18 N -0.76 -37.88 5.24 -343.44 -1.80 -39.68 16 19 C -0.22 -13.23 10.47 84.03 0.88 -12.35 16 20 H 0.07 4.34 8.06 -2.91 -0.02 4.32 16 21 C -0.05 -3.19 5.50 84.86 0.47 -2.72 16 22 N -0.97 -63.55 13.97 21.65 0.30 -63.25 16 23 Si 0.94 49.75 27.73 68.60 1.90 51.65 16 24 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 25 H -0.29 -15.12 7.11 99.48 0.71 -14.41 16 26 H -0.27 -14.52 6.20 99.48 0.62 -13.90 16 27 C -0.16 -3.91 5.48 -10.80 -0.06 -3.97 16 28 C -0.17 -3.45 9.59 30.62 0.29 -3.16 16 29 C -0.17 -3.62 9.94 30.62 0.30 -3.31 16 30 H 0.10 1.68 7.63 -2.38 -0.02 1.66 16 31 H 0.07 1.84 5.34 -2.39 -0.01 1.83 16 32 H 0.07 2.02 6.56 -2.39 -0.02 2.01 16 33 H 0.18 3.64 6.29 -2.91 -0.02 3.62 16 34 H 0.22 1.76 8.06 -2.91 -0.02 1.73 16 35 H 0.19 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.10 4.40 6.12 -2.91 -0.02 4.38 16 39 H 0.05 1.87 5.39 -2.38 -0.01 1.85 16 40 H 0.04 1.49 7.44 -2.39 -0.02 1.48 16 41 H 0.36 18.55 4.92 -92.71 -0.46 18.09 16 42 H 0.26 16.11 8.31 -92.71 -0.77 15.33 16 43 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 44 H 0.09 2.22 5.80 -2.39 -0.01 2.21 16 45 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 47 H 0.08 2.07 7.66 -2.39 -0.02 2.05 16 Total: -1.00 -83.21 375.95 3.19 -80.02 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.47 Total: 34.23 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 6.21 Total: -2.73 kcal Atomic # 7 Polarization: -132.22 SS G_CDS: -5.33 Total: -137.56 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.61 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.90 Total: 51.65 kcal Total: -83.21 3.19 -80.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734308881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.230 kcal (2) G-P(sol) polarization free energy of solvation -83.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds