Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34771 * 119.99756 * 2 1 4 4 O 1.21504 * 120.00154 * 174.76916 * 3 2 1 5 5 C 1.48279 * 120.00049 * 355.04652 * 3 2 1 6 6 C 1.40279 * 119.24247 * 184.87651 * 5 3 2 7 7 C 1.36499 * 119.82215 * 179.97438 * 6 5 3 8 8 C 1.40763 * 118.24414 * 0.02562 * 7 6 5 9 9 C 1.40415 * 121.28709 * 180.02562 * 8 7 6 10 10 C 1.36133 * 119.65009 * 180.02562 * 9 8 7 11 11 C 1.39433 * 120.91645 * 359.95226 * 10 9 8 12 12 C 1.35995 * 121.08323 * 0.02939 * 11 10 9 13 13 C 1.40829 * 119.73413 * 359.97438 * 12 11 10 14 14 N 1.31879 * 119.24108 * 4.61206 * 5 3 2 15 15 C 1.46492 * 120.00004 * 179.97438 * 2 1 3 16 16 H 1.09007 * 109.47004 * 174.36761 * 15 2 1 17 17 C 1.53003 * 109.47007 * 54.37439 * 15 2 1 18 18 N 1.46499 * 109.46981 * 54.99894 * 17 15 2 19 19 C 1.36943 * 119.99502 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00186 * 359.97438 * 19 18 17 21 21 C 1.38812 * 119.99695 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00023 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00247 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46833 * 90.00140 * 23 21 19 25 25 H 1.48496 * 109.47351 * 210.00374 * 23 21 19 26 26 H 1.48497 * 109.46857 * 330.00627 * 23 21 19 27 27 C 1.53000 * 109.47602 * 294.37467 * 15 2 1 28 28 C 1.52994 * 117.49547 * 2.36132 * 27 15 2 29 29 C 1.53001 * 117.49426 * 293.70412 * 27 15 2 30 30 H 1.09000 * 109.46850 * 65.24254 * 1 2 3 31 31 H 1.09006 * 109.47025 * 185.24333 * 1 2 3 32 32 H 1.09001 * 109.47103 * 305.24061 * 1 2 3 33 33 H 1.08006 * 120.08901 * 0.02562 * 6 5 3 34 34 H 1.08005 * 120.88503 * 179.97438 * 7 6 5 35 35 H 1.07999 * 120.17467 * 359.97438 * 9 8 7 36 36 H 1.08004 * 119.54323 * 179.97438 * 10 9 8 37 37 H 1.07999 * 119.46030 * 180.02562 * 11 10 9 38 38 H 1.08004 * 120.13286 * 180.02562 * 12 11 10 39 39 H 1.09006 * 109.46790 * 174.99696 * 17 15 2 40 40 H 1.08996 * 109.47038 * 294.99261 * 17 15 2 41 41 H 0.96999 * 120.00101 * 359.97438 * 18 17 15 42 42 H 0.97003 * 120.00348 * 179.97438 * 22 21 19 43 43 H 1.09000 * 115.55422 * 148.04095 * 27 15 2 44 44 H 1.09001 * 117.50330 * 0.02562 * 28 27 15 45 45 H 1.09010 * 117.49431 * 145.02368 * 28 27 15 46 46 H 1.08996 * 117.49956 * 214.97378 * 29 27 15 47 47 H 1.09002 * 117.50374 * 359.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3501 1.1695 0.0959 5 6 1.4016 2.4489 -0.1109 6 6 2.1228 3.6477 -0.2131 7 6 1.4561 4.8343 -0.3163 8 6 0.0487 4.8099 -0.3156 9 6 -0.7012 5.9925 -0.4191 10 6 -2.0611 5.9302 -0.4145 11 6 -2.7218 4.7069 -0.3095 12 6 -2.0289 3.5411 -0.2079 13 6 -0.6208 3.5631 -0.2089 14 7 0.0829 2.4351 -0.1164 15 6 2.1975 -1.2687 0.0006 16 1 3.2649 -1.0720 -0.1004 17 6 1.7248 -2.1310 -1.1716 18 7 1.8637 -1.3768 -2.4198 19 6 1.4997 -1.9489 -3.6096 20 1 1.1107 -2.9562 -3.6277 21 6 1.6308 -1.2342 -4.7922 22 7 2.1045 -0.0064 -4.7701 23 14 1.1351 -2.0148 -6.4153 24 1 -0.2953 -1.7233 -6.6882 25 1 1.9712 -1.4573 -7.5086 26 1 1.3350 -3.4843 -6.3392 27 6 1.9370 -2.0075 1.3148 28 6 0.9719 -1.3601 2.3098 29 6 2.4748 -1.3744 2.5996 30 1 -0.3633 0.4304 -0.9332 31 1 -0.3633 -1.0234 0.0939 32 1 -0.3633 0.5930 0.8393 33 1 3.2028 3.6318 -0.2111 34 1 1.9941 5.7675 -0.3955 35 1 -0.2018 6.9466 -0.5010 36 1 -2.6362 6.8410 -0.4938 37 1 -3.8016 4.6848 -0.3087 38 1 -2.5565 2.6021 -0.1277 39 1 2.3304 -3.0358 -1.2244 40 1 0.6792 -2.4017 -1.0250 41 1 2.2128 -0.4719 -2.4035 42 1 2.1965 0.4931 -5.5966 43 1 1.9391 -3.0956 1.2508 44 1 0.5221 -0.4080 2.0280 45 1 0.3391 -2.0224 2.9008 46 1 2.8302 -2.0460 3.3811 47 1 3.0146 -0.4318 2.5087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734310940.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = 90.271073 kcal Electronic energy + Delta-G solvation = -29868.412433 eV Core-core repulsion = 26018.559109 eV Total energy + Delta-G solvation = -3849.853324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08128 -39.80854 -37.66875 -36.69170 -34.92382 -34.09973 -33.33433 -31.42171 -30.61506 -30.07173 -28.43183 -26.57887 -25.09603 -23.95249 -23.61591 -22.23054 -22.03093 -21.49595 -20.98319 -19.02703 -18.04681 -17.58647 -17.19854 -16.99250 -15.94778 -15.85111 -15.24362 -14.92623 -14.70777 -14.57090 -14.38435 -14.13777 -13.67965 -13.53470 -13.26353 -13.20752 -13.12500 -12.93921 -12.51341 -12.05131 -11.90039 -11.77683 -11.65955 -11.47938 -11.41373 -11.19120 -10.98331 -10.82807 -10.77384 -10.61543 -10.22152 -10.09357 -9.94459 -9.67796 -9.63362 -9.14179 -8.84663 -8.83209 -8.37722 -8.16136 -6.86205 -5.69940 -2.98976 0.18261 0.64915 1.89251 2.49863 3.18863 3.40832 3.46135 3.50896 3.53058 4.00533 4.06930 4.14413 4.46176 4.58914 4.64662 4.70974 4.80579 4.89441 5.00817 5.04387 5.13678 5.17506 5.23681 5.37151 5.51265 5.61143 5.65927 5.69993 5.79825 5.81802 5.86240 5.90176 5.97769 6.01323 6.08598 6.12995 6.21910 6.23174 6.28162 6.31693 6.38647 6.41115 6.54946 6.58145 6.71762 6.78281 7.04506 7.65743 7.73742 7.79653 8.46931 8.47389 9.58950 10.17207 10.52369 11.52419 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008214 B = 0.004473 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3408.190870 B = 6258.528537 C = 8241.816525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.570 5.570 3 C 0.568 3.432 4 O -0.536 6.536 5 C 0.129 3.871 6 C -0.119 4.119 7 C -0.067 4.067 8 C -0.089 4.089 9 C -0.101 4.101 10 C -0.112 4.112 11 C -0.109 4.109 12 C -0.081 4.081 13 C 0.120 3.880 14 N -0.430 5.430 15 C 0.159 3.841 16 H 0.104 0.896 17 C 0.148 3.852 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.157 4.157 28 C -0.183 4.183 29 C -0.177 4.177 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.031 0.969 40 H 0.024 0.976 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.694 10.122 15.534 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.300 5.300 3 C 0.354 3.646 4 O -0.412 6.412 5 C -0.024 4.024 6 C -0.140 4.140 7 C -0.093 4.093 8 C -0.091 4.091 9 C -0.120 4.120 10 C -0.130 4.130 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.003 4.003 14 N -0.142 5.142 15 C 0.056 3.944 16 H 0.122 0.878 17 C 0.020 3.980 18 N -0.372 5.372 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.177 4.177 28 C -0.220 4.220 29 C -0.214 4.214 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.219 0.781 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.630 9.193 15.508 19.576 hybrid contribution 0.182 0.678 -1.238 1.423 sum -7.448 9.871 14.270 18.883 Atomic orbital electron populations 1.21947 0.78290 1.01121 1.02510 1.47551 1.07843 1.04833 1.69780 1.17853 0.86450 0.82983 0.77275 1.90755 1.13023 1.86627 1.50832 1.21381 0.89717 0.94337 0.96989 1.21747 1.02540 0.91557 0.98139 1.21415 0.92657 0.98788 0.96401 1.18977 0.94373 0.94682 1.01080 1.20976 0.94230 0.96970 0.99797 1.20949 0.94543 0.98128 0.99429 1.20892 1.00404 0.92123 0.99482 1.20885 0.91233 0.99305 0.98550 1.18990 0.94349 0.87998 0.98946 1.68468 1.07116 1.28413 1.10223 1.20996 0.98045 0.82381 0.93003 0.87845 1.20965 0.97866 0.93546 0.85664 1.42275 1.77836 1.16235 1.00814 1.19196 1.35138 0.97856 0.84728 0.91237 1.24728 1.02097 0.96360 0.97669 1.69684 1.51601 1.10193 1.26387 0.86214 0.77781 0.78317 0.84028 1.21846 1.21853 1.20773 1.22660 1.05278 0.99289 0.90443 1.23255 0.92692 1.03388 1.02684 1.22919 0.96758 1.02854 0.98871 0.91139 0.91645 0.91512 0.83263 0.83881 0.85262 0.85614 0.85291 0.84439 0.95184 0.95782 0.78129 0.93644 0.86926 0.87725 0.89323 0.89240 0.88902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.66 6.38 59.85 0.38 2.04 16 2 N -0.57 -10.14 1.52 -174.88 -0.27 -10.41 16 3 C 0.57 10.89 7.66 -12.13 -0.09 10.80 16 4 O -0.54 -11.38 15.65 5.36 0.08 -11.30 16 5 C 0.13 2.23 6.69 -82.95 -0.55 1.67 16 6 C -0.12 -1.79 9.54 -39.44 -0.38 -2.16 16 7 C -0.07 -0.82 9.88 -39.26 -0.39 -1.21 16 8 C -0.09 -1.14 5.75 -106.71 -0.61 -1.75 16 9 C -0.10 -1.00 9.77 -39.52 -0.39 -1.38 16 10 C -0.11 -0.99 9.96 -39.89 -0.40 -1.39 16 11 C -0.11 -1.02 9.94 -39.94 -0.40 -1.42 16 12 C -0.08 -0.95 9.99 -39.41 -0.39 -1.34 16 13 C 0.12 1.72 6.61 -84.85 -0.56 1.16 16 14 N -0.43 -6.91 5.88 -7.54 -0.04 -6.95 16 15 C 0.16 2.85 2.44 -67.93 -0.17 2.68 16 16 H 0.10 2.09 6.95 -51.93 -0.36 1.73 16 17 C 0.15 3.05 5.39 -4.04 -0.02 3.03 16 18 N -0.73 -19.06 5.43 -59.91 -0.33 -19.38 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -29.13 13.06 55.49 0.72 -28.41 16 23 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C -0.16 -2.23 5.57 -90.62 -0.50 -2.73 16 28 C -0.18 -2.31 8.90 -26.70 -0.24 -2.55 16 29 C -0.18 -2.32 10.24 -26.69 -0.27 -2.59 16 30 H 0.07 1.31 7.22 -51.93 -0.38 0.93 16 31 H 0.06 0.98 6.26 -51.93 -0.32 0.66 16 32 H 0.07 0.95 5.86 -51.93 -0.30 0.64 16 33 H 0.15 2.14 7.61 -52.48 -0.40 1.74 16 34 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.49 7.05 -51.93 -0.37 0.12 16 41 H 0.38 10.97 7.33 -40.82 -0.30 10.67 16 42 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.11 1.45 8.06 -51.93 -0.42 1.04 16 44 H 0.10 1.41 4.59 -51.93 -0.24 1.17 16 45 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 46 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -34.13 382.54 -10.75 -44.89 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.44 Total: 12.45 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -5.23 Total: -4.56 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.09 Total: -65.15 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.13 -10.75 -44.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734310940.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.156 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds