Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.46785 * 2 1 4 4 N 1.28441 * 125.19336 * 274.51113 * 3 2 1 5 5 C 1.30868 * 110.92695 * 180.16380 * 4 3 2 6 6 C 1.39672 * 107.85908 * 359.60972 * 5 4 3 7 7 C 1.36600 * 125.18742 * 94.24402 * 3 2 1 8 8 C 1.47161 * 126.88474 * 359.97438 * 7 3 2 9 9 O 1.21629 * 120.00217 * 354.41906 * 8 7 3 10 10 N 1.34784 * 119.99914 * 174.41558 * 8 7 3 11 11 C 1.46502 * 119.99747 * 185.11513 * 10 8 7 12 12 C 1.52999 * 109.46904 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.47140 * 294.99646 * 12 11 10 14 14 C 1.53003 * 109.47048 * 174.99731 * 12 11 10 15 15 O 1.42899 * 109.46945 * 304.99531 * 14 12 11 16 16 N 1.46905 * 109.47324 * 54.99776 * 12 11 10 17 17 C 1.46899 * 110.99803 * 205.00091 * 16 12 11 18 18 C 1.50700 * 109.46682 * 179.97438 * 17 16 12 19 19 O 1.21292 * 120.00569 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99949 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99983 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00214 * 359.97438 * 21 20 18 23 23 C 1.38956 * 120.00081 * 179.97438 * 21 20 18 24 24 N 1.31403 * 120.00279 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99580 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47185 * 90.00138 * 25 23 21 27 27 H 1.48503 * 109.46740 * 209.99528 * 25 23 21 28 28 H 1.48500 * 109.47088 * 329.99448 * 25 23 21 29 29 H 1.08996 * 109.46973 * 59.99931 * 1 2 3 30 30 H 1.08999 * 109.46584 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47132 * 299.99912 * 1 2 3 32 32 H 1.08995 * 109.47291 * 240.00619 * 2 1 3 33 33 H 1.08996 * 109.46973 * 120.00069 * 2 1 3 34 34 H 1.07997 * 126.06546 * 179.87664 * 5 4 3 35 35 H 1.07997 * 127.31409 * 180.24430 * 6 5 4 36 36 H 0.96994 * 119.99842 * 5.10980 * 10 8 7 37 37 H 1.09005 * 109.46873 * 299.99463 * 11 10 8 38 38 H 1.09001 * 109.47702 * 59.99738 * 11 10 8 39 39 H 1.08993 * 109.47083 * 64.99924 * 14 12 11 40 40 H 1.09001 * 109.46812 * 185.00105 * 14 12 11 41 41 H 0.96705 * 113.99798 * 179.97438 * 15 14 12 42 42 H 1.00901 * 110.99702 * 328.95407 * 16 12 11 43 43 H 1.08999 * 109.47295 * 299.99483 * 17 16 12 44 44 H 1.09000 * 109.47180 * 60.00115 * 17 16 12 45 45 H 0.96994 * 119.99599 * 0.02562 * 20 18 17 46 46 H 0.97000 * 120.00547 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1872 2.1067 -1.0464 5 6 2.6371 3.2929 -0.7252 6 6 2.7635 3.3411 0.6650 7 6 2.3585 2.0959 1.1133 8 6 2.3048 1.6345 2.5097 9 8 1.8310 0.5455 2.7725 10 7 2.7805 2.4186 3.4973 11 6 2.8304 1.9154 4.8723 12 6 3.4079 2.9950 5.7898 13 1 4.4451 3.1880 5.5157 14 6 3.3447 2.5175 7.2420 15 8 2.0012 2.1538 7.5657 16 7 2.6255 4.2300 5.6459 17 6 3.4293 5.4069 6.0017 18 6 2.5952 6.6518 5.8416 19 8 1.4446 6.5671 5.4674 20 7 3.1279 7.8595 6.1142 21 6 2.3693 8.9921 5.9680 22 1 1.3450 8.9166 5.6340 23 6 2.9183 10.2371 6.2496 24 7 2.1911 11.3227 6.1100 25 14 4.6901 10.3677 6.8267 26 1 5.5842 10.5158 5.6503 27 1 4.8365 11.5512 7.7116 28 1 5.0581 9.1401 7.5769 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8655 4.0939 -1.4126 35 1 3.1044 4.1733 1.2629 36 1 3.0900 3.3159 3.2977 37 1 1.8236 1.6586 5.2019 38 1 3.4630 1.0287 4.9122 39 1 3.9958 1.6527 7.3688 40 1 3.6731 3.3197 7.9029 41 1 1.8864 1.8404 8.4733 42 1 2.2531 4.3153 4.7120 43 1 3.7601 5.3215 7.0368 44 1 4.2981 5.4653 5.3461 45 1 4.0481 7.9274 6.4131 46 1 2.5743 12.1919 6.3062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734365686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -60.936105 kcal Electronic energy + Delta-G solvation = -29425.854703 eV Core-core repulsion = 25158.595280 eV Total energy + Delta-G solvation = -4267.259422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.57871 -40.80890 -40.21944 -38.72552 -36.63039 -36.02996 -35.60515 -34.84790 -33.71809 -32.37622 -30.98120 -30.77053 -28.03876 -27.06266 -25.51831 -25.02046 -23.88774 -22.39534 -21.62680 -21.28755 -20.92471 -20.28661 -19.22650 -18.36627 -17.82893 -17.44489 -17.16335 -17.06222 -16.62527 -16.49232 -16.24435 -15.81192 -15.63799 -15.54136 -15.10408 -14.99544 -14.80162 -14.63425 -14.58299 -14.26004 -14.03442 -14.01601 -13.56253 -13.42840 -13.09516 -13.04928 -12.92277 -12.66971 -12.38769 -12.34012 -11.96981 -11.94779 -11.89230 -11.48187 -11.23975 -10.73098 -10.45841 -10.40353 -10.22269 -10.13429 -10.04584 -9.30364 -8.38502 -5.99594 0.14371 1.31654 1.32478 1.38396 1.47452 1.58920 1.99364 2.05867 2.09415 2.25888 2.69280 3.18315 3.32867 3.44199 3.49238 3.52438 3.81036 3.97302 4.03967 4.10270 4.14472 4.24212 4.27363 4.39003 4.44928 4.53229 4.54445 4.61856 4.65608 4.72467 4.77925 4.80940 4.84032 5.01583 5.07226 5.21403 5.49379 5.55309 5.70706 5.92329 6.05560 6.20929 6.30822 6.62568 6.89388 6.91645 7.03294 7.10479 7.43123 8.00778 8.79322 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011276 B = 0.002722 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.505112 B =10284.003581 C =12001.671721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.107 3.893 3 N -0.262 5.262 4 N -0.295 5.295 5 C -0.008 4.008 6 C -0.184 4.184 7 C -0.060 4.060 8 C 0.593 3.407 9 O -0.564 6.564 10 N -0.706 5.706 11 C 0.130 3.870 12 C 0.079 3.921 13 H 0.097 0.903 14 C 0.086 3.914 15 O -0.584 6.584 16 N -0.678 5.678 17 C 0.059 3.941 18 C 0.448 3.552 19 O -0.615 6.615 20 N -0.590 5.590 21 C -0.327 4.327 22 H 0.052 0.948 23 C -0.017 4.017 24 N -0.937 5.937 25 Si 0.967 3.033 26 H -0.255 1.255 27 H -0.279 1.279 28 H -0.228 1.228 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.214 0.786 35 H 0.180 0.820 36 H 0.409 0.591 37 H 0.064 0.936 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.390 0.610 42 H 0.342 0.658 43 H 0.115 0.885 44 H 0.089 0.911 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.904 -23.443 -5.156 26.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.012 4.012 3 N -0.051 5.051 4 N -0.128 5.128 5 C -0.183 4.183 6 C -0.213 4.213 7 C -0.188 4.188 8 C 0.379 3.621 9 O -0.444 6.444 10 N -0.358 5.358 11 C 0.007 3.993 12 C -0.031 4.031 13 H 0.115 0.885 14 C 0.008 3.992 15 O -0.391 6.391 16 N -0.314 5.314 17 C -0.073 4.073 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.071 0.929 23 C -0.216 4.216 24 N -0.578 5.578 25 Si 0.787 3.213 26 H -0.179 1.179 27 H -0.204 1.204 28 H -0.151 1.151 29 H 0.079 0.921 30 H 0.123 0.877 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.231 0.769 35 H 0.198 0.802 36 H 0.246 0.754 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.238 0.762 42 H 0.162 0.838 43 H 0.133 0.867 44 H 0.107 0.893 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.039 -24.773 -6.095 27.415 hybrid contribution 1.160 1.775 0.673 2.225 sum 11.199 -22.998 -5.421 26.148 Atomic orbital electron populations 1.22033 0.93078 1.04613 1.01765 1.22349 0.96606 0.75888 1.06320 1.46096 1.44317 1.12929 1.01726 1.73181 1.19299 1.06032 1.14295 1.24135 1.03130 0.95357 0.95651 1.22645 1.05855 0.96596 0.96214 1.21496 1.12334 0.95260 0.89749 1.16970 0.77484 0.84113 0.83518 1.90760 1.46502 1.22759 1.84345 1.45648 1.64165 1.18206 1.07795 1.21484 1.02709 0.96873 0.78236 1.22075 0.97048 0.88468 0.95500 0.88511 1.22240 0.83956 0.99166 0.93870 1.86575 1.28717 1.87874 1.35962 1.59988 1.37001 1.00350 1.34049 1.21771 0.94065 0.86978 1.04457 1.21023 0.88452 0.85288 0.81671 1.90574 1.20817 1.87006 1.51522 1.42006 1.13773 1.05407 1.61993 1.18985 0.97135 0.84846 1.44705 0.92942 1.26154 1.04703 0.93707 0.97003 1.69811 1.39634 0.99076 1.49240 0.85343 0.76569 0.79960 0.79474 1.17945 1.20447 1.15130 0.92118 0.87712 0.93965 0.86565 0.87133 0.76946 0.80244 0.75406 0.91763 0.89052 0.90407 0.92646 0.76166 0.83752 0.86741 0.89295 0.77391 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 10.24 71.98 0.74 -2.05 16 2 C 0.11 2.01 6.58 86.38 0.57 2.57 16 3 N -0.26 -6.16 3.35 -334.69 -1.12 -7.28 16 4 N -0.30 -7.04 11.90 -57.14 -0.68 -7.72 16 5 C -0.01 -0.16 12.03 85.18 1.02 0.87 16 6 C -0.18 -3.78 10.50 22.66 0.24 -3.54 16 7 C -0.06 -1.43 6.96 40.78 0.28 -1.15 16 8 C 0.59 14.73 7.78 86.59 0.67 15.41 16 9 O -0.56 -16.51 14.68 -4.12 -0.06 -16.57 16 10 N -0.71 -14.34 4.98 -466.61 -2.32 -16.66 16 11 C 0.13 2.57 5.20 86.38 0.45 3.02 16 12 C 0.08 1.36 2.60 44.91 0.12 1.48 16 13 H 0.10 1.07 7.80 -2.39 -0.02 1.05 16 14 C 0.09 1.33 6.80 71.98 0.49 1.82 16 15 O -0.58 -12.23 12.64 -148.98 -1.88 -14.11 16 16 N -0.68 -17.99 5.87 -495.57 -2.91 -20.90 16 17 C 0.06 1.56 5.96 85.56 0.51 2.07 16 18 C 0.45 19.10 7.82 87.66 0.69 19.78 16 19 O -0.61 -33.40 15.78 -3.07 -0.05 -33.45 16 20 N -0.59 -26.45 5.09 -306.98 -1.56 -28.01 16 21 C -0.33 -18.78 10.16 84.04 0.85 -17.92 16 22 H 0.05 3.63 7.39 -2.91 -0.02 3.61 16 23 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 24 N -0.94 -55.99 13.96 21.66 0.30 -55.69 16 25 Si 0.97 37.33 27.74 68.60 1.90 39.23 16 26 H -0.26 -9.22 7.11 99.48 0.71 -8.52 16 27 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 28 H -0.23 -7.22 6.52 99.48 0.65 -6.57 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.11 2.20 6.20 -2.39 -0.01 2.18 16 34 H 0.21 2.91 8.06 -2.91 -0.02 2.88 16 35 H 0.18 2.81 7.59 -2.91 -0.02 2.79 16 36 H 0.41 7.10 6.41 -92.71 -0.59 6.50 16 37 H 0.06 1.71 7.40 -2.38 -0.02 1.69 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.82 7.35 -2.39 -0.02 0.80 16 41 H 0.39 4.75 9.12 -74.05 -0.68 4.07 16 42 H 0.34 9.95 6.41 -89.69 -0.58 9.37 16 43 H 0.11 2.50 7.36 -2.39 -0.02 2.48 16 44 H 0.09 1.64 8.06 -2.39 -0.02 1.62 16 45 H 0.39 14.12 5.76 -92.71 -0.53 13.59 16 46 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -87.71 386.91 -2.66 -90.37 By element: Atomic # 1 Polarization: 50.30 SS G_CDS: -1.38 Total: 48.92 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 7.10 Total: 21.87 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -8.30 Total: -136.26 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -1.99 Total: -64.13 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 1.90 Total: 39.23 kcal Total: -87.71 -2.66 -90.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734365686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.435 kcal (2) G-P(sol) polarization free energy of solvation -87.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds