Wall clock time and date at job start Sat Apr 11 2020 05:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46502 * 109.47171 * 2 1 4 4 C 1.35032 * 124.87984 * 124.97536 * 3 2 1 5 5 C 1.35372 * 107.22502 * 179.72501 * 4 3 2 6 6 C 1.41495 * 105.50234 * 0.41578 * 5 4 3 7 7 C 1.47707 * 126.51815 * 179.84262 * 6 5 4 8 8 O 1.21572 * 120.00278 * 359.71417 * 7 6 5 9 9 N 1.34779 * 120.00277 * 179.71562 * 7 6 5 10 10 C 1.46499 * 120.00187 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46851 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47416 * 294.99799 * 11 10 9 13 13 C 1.53001 * 109.46848 * 174.99855 * 11 10 9 14 14 O 1.42897 * 109.47472 * 305.00379 * 13 11 10 15 15 N 1.46901 * 109.47245 * 55.00305 * 11 10 9 16 16 C 1.46895 * 110.99816 * 204.99659 * 15 11 10 17 17 C 1.50706 * 109.47182 * 179.97438 * 16 15 11 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 15 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00554 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46847 * 89.99945 * 24 22 20 26 26 H 1.48493 * 109.47164 * 210.00376 * 24 22 20 27 27 H 1.48502 * 109.46888 * 330.00260 * 24 22 20 28 28 N 1.28457 * 124.88424 * 304.97938 * 3 2 1 29 29 H 1.08990 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46653 * 299.99824 * 1 2 3 31 31 H 1.09002 * 109.46912 * 59.99525 * 1 2 3 32 32 H 1.08998 * 109.46653 * 240.00176 * 2 1 3 33 33 H 1.09002 * 109.46912 * 120.00475 * 2 1 3 34 34 H 1.08004 * 126.39054 * 0.02562 * 4 3 2 35 35 H 1.07999 * 127.24588 * 180.26145 * 5 4 3 36 36 H 0.97002 * 119.99552 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.47243 * 60.00001 * 10 9 7 38 38 H 1.08999 * 109.46836 * 299.99904 * 10 9 7 39 39 H 1.09005 * 109.46975 * 65.00179 * 13 11 10 40 40 H 1.08997 * 109.47675 * 185.00010 * 13 11 10 41 41 H 0.96703 * 114.00471 * 180.02562 * 14 13 11 42 42 H 1.00902 * 110.99849 * 328.95038 * 15 11 10 43 43 H 1.09001 * 109.47613 * 60.00104 * 16 15 11 44 44 H 1.08998 * 109.47678 * 300.00000 * 16 15 11 45 45 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 46 46 H 0.97004 * 120.00112 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8745 1.8976 0.9077 5 6 3.0874 3.1905 0.5677 6 6 2.3007 3.4123 -0.5873 7 6 2.1864 4.6760 -1.3435 8 8 2.8032 5.6590 -0.9815 9 7 1.3981 4.7392 -2.4349 10 6 1.2851 5.9924 -3.1853 11 6 0.3364 5.7942 -4.3691 12 1 0.7707 5.0784 -5.0670 13 6 0.1205 7.1321 -5.0792 14 8 -0.3393 8.1029 -4.1368 15 7 -0.9528 5.2840 -3.8834 16 6 -1.6550 4.5397 -4.9372 17 6 -2.9698 4.0324 -4.4030 18 8 -3.2903 4.2683 -3.2572 19 7 -3.7920 3.3218 -5.2002 20 6 -4.9882 2.8609 -4.7143 21 1 -5.2715 3.0668 -3.6926 22 6 -5.8362 2.1287 -5.5362 23 7 -5.4917 1.8787 -6.7795 24 14 -7.4658 1.5000 -4.8741 25 1 -8.5215 2.5175 -5.1096 26 1 -7.8294 0.2393 -5.5694 27 1 -7.3420 1.2435 -3.4166 28 7 1.6938 2.2753 -0.8634 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3120 1.3751 1.7456 35 1 3.7219 3.9033 1.0733 36 1 0.9062 3.9548 -2.7240 37 1 2.2684 6.2855 -3.5532 38 1 0.8941 6.7727 -2.5324 39 1 1.0611 7.4673 -5.5164 40 1 -0.6230 7.0098 -5.8668 41 1 -0.4980 8.9772 -4.5183 42 1 -0.8291 4.7147 -3.0596 43 1 -1.0429 3.6959 -5.2557 44 1 -1.8373 5.1975 -5.7870 45 1 -3.5378 3.1372 -6.1179 46 1 -6.0835 1.3672 -7.3533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734381253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:13 Heat of formation + Delta-G solvation = -33.491607 kcal Electronic energy + Delta-G solvation = -29329.376213 eV Core-core repulsion = 25063.306873 eV Total energy + Delta-G solvation = -4266.069340 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.80048 -39.59245 -38.41821 -37.44504 -35.48864 -34.78660 -34.07500 -33.53147 -31.25589 -30.99287 -30.43086 -29.74310 -26.34854 -26.24377 -24.48608 -23.86124 -22.29157 -21.55834 -20.49553 -19.99432 -19.29015 -18.17864 -17.85713 -17.40962 -16.90804 -16.38101 -16.24713 -15.57530 -15.40598 -15.20696 -14.74586 -14.51723 -14.41843 -14.21396 -13.86608 -13.84296 -13.68819 -13.50259 -13.28696 -13.08986 -12.68855 -12.44126 -12.37604 -12.11617 -11.77367 -11.70495 -11.54254 -11.45541 -11.06373 -11.01038 -10.92655 -10.39734 -10.21603 -10.16448 -9.86154 -9.50314 -9.44488 -9.24692 -9.00925 -8.43138 -8.05565 -7.94986 -6.41505 -3.81969 1.50145 1.99322 2.23677 3.12837 3.17677 3.26083 3.31920 3.42433 3.91289 4.04025 4.08222 4.26037 4.38378 4.54720 4.56230 4.62645 4.76192 4.79404 4.99898 5.07061 5.22537 5.25209 5.33313 5.34989 5.42366 5.46775 5.50710 5.59372 5.65967 5.68475 5.76785 5.91051 5.95177 6.08864 6.23188 6.28216 6.38127 6.57796 7.19189 7.38332 7.55580 7.61801 7.77841 7.80503 8.06972 8.19559 8.62254 9.18697 9.54975 10.07028 10.76349 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.003240 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.488516 B = 8639.577505 C =11602.741333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.279 5.279 4 C -0.022 4.022 5 C -0.179 4.179 6 C -0.021 4.021 7 C 0.609 3.391 8 O -0.535 6.535 9 N -0.719 5.719 10 C 0.122 3.878 11 C 0.075 3.925 12 H 0.061 0.939 13 C 0.092 3.908 14 O -0.553 6.553 15 N -0.653 5.653 16 C 0.048 3.952 17 C 0.442 3.558 18 O -0.579 6.579 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 N -0.253 5.253 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.404 0.596 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.372 0.628 42 H 0.350 0.650 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.550 -1.607 7.066 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.068 5.068 4 C -0.164 4.164 5 C -0.207 4.207 6 C -0.181 4.181 7 C 0.393 3.607 8 O -0.409 6.409 9 N -0.372 5.372 10 C -0.001 4.001 11 C -0.035 4.035 12 H 0.078 0.922 13 C 0.013 3.987 14 O -0.357 6.357 15 N -0.289 5.289 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 N -0.090 5.090 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.240 0.760 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.218 0.782 42 H 0.172 0.828 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.607 -1.401 7.489 19.184 hybrid contribution 0.032 -1.006 -0.424 1.092 sum 17.639 -2.407 7.065 19.153 Atomic orbital electron populations 1.22105 0.92553 1.03689 1.04495 1.22060 0.97127 0.76470 1.04648 1.45671 1.32099 1.10467 1.18579 1.22877 0.99305 0.95583 0.98686 1.21753 1.04529 0.96078 0.98381 1.21914 1.02971 0.93189 0.99980 1.16818 0.78925 0.85464 0.79476 1.90784 1.46252 1.35704 1.68200 1.45894 1.47811 1.14894 1.28558 1.21511 0.98777 0.86493 0.93335 1.21885 0.89804 0.96009 0.95830 0.92167 1.22066 0.97317 0.88319 0.91031 1.86615 1.89338 1.22554 1.37201 1.60033 1.18381 1.43292 1.07167 1.21788 0.95183 0.96428 0.95104 1.19770 0.86441 0.83797 0.87272 1.90546 1.76018 1.60977 1.18676 1.41846 1.17525 1.47376 1.13406 1.19700 0.94010 1.30021 0.98985 0.87962 1.25245 0.99925 0.97505 0.95272 1.69613 1.38268 1.40528 1.06034 0.85868 0.81481 0.78047 0.78962 1.20391 1.20971 1.19454 1.73499 1.21474 0.98078 1.15942 0.90080 0.91714 0.90281 0.88806 0.87916 0.80171 0.82096 0.75997 0.90887 0.88922 0.93666 0.93061 0.78173 0.82782 0.93904 0.89594 0.77523 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.02 37.16 0.37 -1.02 16 2 C 0.12 0.77 7.12 -4.04 -0.03 0.74 16 3 N -0.28 -2.84 3.41 -61.32 -0.21 -3.05 16 4 C -0.02 -0.20 11.40 -17.17 -0.20 -0.39 16 5 C -0.18 -2.07 10.81 -39.36 -0.43 -2.50 16 6 C -0.02 -0.29 7.13 -82.77 -0.59 -0.88 16 7 C 0.61 9.39 7.83 -12.39 -0.10 9.29 16 8 O -0.53 -9.49 16.93 5.30 0.09 -9.40 16 9 N -0.72 -10.03 4.99 -61.30 -0.31 -10.33 16 10 C 0.12 1.63 5.20 -4.04 -0.02 1.61 16 11 C 0.08 0.97 2.60 -67.71 -0.18 0.79 16 12 H 0.06 0.67 7.80 -51.93 -0.40 0.27 16 13 C 0.09 1.05 6.80 37.16 0.25 1.31 16 14 O -0.55 -7.18 12.64 -35.23 -0.45 -7.62 16 15 N -0.65 -11.01 5.87 -107.99 -0.63 -11.64 16 16 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 17 C 0.44 10.51 7.82 -10.98 -0.09 10.43 16 18 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 19 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 N -0.25 -3.35 11.36 33.42 0.38 -2.97 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 0.34 8.04 -51.93 -0.42 -0.08 16 34 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 35 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 36 H 0.40 5.50 7.10 -40.82 -0.29 5.21 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.46 7.40 -51.93 -0.38 1.07 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.59 7.35 -51.93 -0.38 0.21 16 41 H 0.37 3.10 9.12 45.56 0.42 3.51 16 42 H 0.35 6.30 6.41 -39.29 -0.25 6.05 16 43 H 0.04 0.66 8.06 -51.93 -0.42 0.25 16 44 H 0.09 1.39 7.36 -51.93 -0.38 1.01 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -37.08 394.95 -6.44 -43.52 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: -5.73 Total: 21.31 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: -1.27 Total: 12.23 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.10 Total: -66.07 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.27 Total: -32.97 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.08 -6.44 -43.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734381253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.024 kcal (2) G-P(sol) polarization free energy of solvation -37.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds