Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46502 * 109.47171 * 2 1 4 4 C 1.35032 * 124.87984 * 124.97536 * 3 2 1 5 5 C 1.35372 * 107.22502 * 179.72501 * 4 3 2 6 6 C 1.41495 * 105.50234 * 0.41578 * 5 4 3 7 7 C 1.47707 * 126.51815 * 179.84262 * 6 5 4 8 8 O 1.21572 * 120.00278 * 359.71417 * 7 6 5 9 9 N 1.34779 * 120.00277 * 179.71562 * 7 6 5 10 10 C 1.46499 * 120.00187 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46851 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47416 * 294.99799 * 11 10 9 13 13 C 1.53001 * 109.46848 * 174.99855 * 11 10 9 14 14 O 1.42897 * 109.47472 * 305.00379 * 13 11 10 15 15 N 1.46901 * 109.47245 * 55.00305 * 11 10 9 16 16 C 1.46895 * 110.99816 * 204.99659 * 15 11 10 17 17 C 1.50706 * 109.47182 * 179.97438 * 16 15 11 18 18 O 1.21297 * 119.99667 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00081 * 179.72734 * 17 16 15 20 20 C 1.37095 * 119.99878 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00380 * 179.97438 * 20 19 17 23 23 N 1.31412 * 119.99401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00554 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46847 * 89.99945 * 24 22 20 26 26 H 1.48493 * 109.47164 * 210.00376 * 24 22 20 27 27 H 1.48502 * 109.46888 * 330.00260 * 24 22 20 28 28 N 1.28457 * 124.88424 * 304.97938 * 3 2 1 29 29 H 1.08990 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46653 * 299.99824 * 1 2 3 31 31 H 1.09002 * 109.46912 * 59.99525 * 1 2 3 32 32 H 1.08998 * 109.46653 * 240.00176 * 2 1 3 33 33 H 1.09002 * 109.46912 * 120.00475 * 2 1 3 34 34 H 1.08004 * 126.39054 * 0.02562 * 4 3 2 35 35 H 1.07999 * 127.24588 * 180.26145 * 5 4 3 36 36 H 0.97002 * 119.99552 * 359.97438 * 9 7 6 37 37 H 1.08997 * 109.47243 * 60.00001 * 10 9 7 38 38 H 1.08999 * 109.46836 * 299.99904 * 10 9 7 39 39 H 1.09005 * 109.46975 * 65.00179 * 13 11 10 40 40 H 1.08997 * 109.47675 * 185.00010 * 13 11 10 41 41 H 0.96703 * 114.00471 * 180.02562 * 14 13 11 42 42 H 1.00902 * 110.99849 * 328.95038 * 15 11 10 43 43 H 1.09001 * 109.47613 * 60.00104 * 16 15 11 44 44 H 1.08998 * 109.47678 * 300.00000 * 16 15 11 45 45 H 0.96998 * 120.00525 * 359.97438 * 19 17 16 46 46 H 0.97004 * 120.00112 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8745 1.8976 0.9077 5 6 3.0874 3.1905 0.5677 6 6 2.3007 3.4123 -0.5873 7 6 2.1864 4.6760 -1.3435 8 8 2.8032 5.6590 -0.9815 9 7 1.3981 4.7392 -2.4349 10 6 1.2851 5.9924 -3.1853 11 6 0.3364 5.7942 -4.3691 12 1 0.7707 5.0784 -5.0670 13 6 0.1205 7.1321 -5.0792 14 8 -0.3393 8.1029 -4.1368 15 7 -0.9528 5.2840 -3.8834 16 6 -1.6550 4.5397 -4.9372 17 6 -2.9698 4.0324 -4.4030 18 8 -3.2903 4.2683 -3.2572 19 7 -3.7920 3.3218 -5.2002 20 6 -4.9882 2.8609 -4.7143 21 1 -5.2715 3.0668 -3.6926 22 6 -5.8362 2.1287 -5.5362 23 7 -5.4917 1.8787 -6.7795 24 14 -7.4658 1.5000 -4.8741 25 1 -8.5215 2.5175 -5.1096 26 1 -7.8294 0.2393 -5.5694 27 1 -7.3420 1.2435 -3.4166 28 7 1.6938 2.2753 -0.8634 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3120 1.3751 1.7456 35 1 3.7219 3.9033 1.0733 36 1 0.9062 3.9548 -2.7240 37 1 2.2684 6.2855 -3.5532 38 1 0.8941 6.7727 -2.5324 39 1 1.0611 7.4673 -5.5164 40 1 -0.6230 7.0098 -5.8668 41 1 -0.4980 8.9772 -4.5183 42 1 -0.8291 4.7147 -3.0596 43 1 -1.0429 3.6959 -5.2557 44 1 -1.8373 5.1975 -5.7870 45 1 -3.5378 3.1372 -6.1179 46 1 -6.0835 1.3672 -7.3533 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734381253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = -66.755740 kcal Electronic energy + Delta-G solvation = -29330.818654 eV Core-core repulsion = 25063.306873 eV Total energy + Delta-G solvation = -4267.511781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.63102 -40.78196 -40.12494 -38.71517 -36.58956 -35.97111 -35.50057 -34.90950 -33.26915 -31.94139 -31.39111 -30.71340 -27.94831 -27.29965 -25.81096 -25.14760 -23.14135 -22.37383 -21.58372 -21.18490 -20.91054 -19.93428 -19.05786 -18.38606 -17.96653 -17.63633 -17.16200 -17.04467 -16.64673 -16.51804 -16.31955 -15.88463 -15.57281 -15.38883 -15.19873 -14.97217 -14.68357 -14.65157 -14.47631 -14.06072 -13.99094 -13.56454 -13.44509 -13.30279 -13.08335 -13.01378 -12.91893 -12.70056 -12.42030 -12.35232 -12.12694 -12.01177 -11.83862 -11.51701 -11.33927 -10.75892 -10.39056 -10.35081 -10.16758 -10.01650 -9.98417 -9.35157 -8.47033 -5.95459 0.50000 1.20486 1.37161 1.41045 1.53531 1.53891 2.04305 2.09028 2.28497 2.33443 2.83357 3.20193 3.30930 3.43176 3.45661 3.75961 3.87065 3.96684 4.01925 4.13020 4.23750 4.28926 4.33574 4.37333 4.44199 4.52255 4.59260 4.69691 4.70555 4.76520 4.77501 4.78634 4.83769 4.98901 5.21142 5.24359 5.38244 5.40600 5.86608 5.90380 6.08269 6.25673 6.27909 6.60279 6.86191 7.07682 7.09360 7.12704 7.55767 8.12084 8.70328 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.003240 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.488516 B = 8639.577505 C =11602.741333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.277 5.277 4 C 0.002 3.998 5 C -0.203 4.203 6 C -0.052 4.052 7 C 0.603 3.397 8 O -0.568 6.568 9 N -0.714 5.714 10 C 0.128 3.872 11 C 0.077 3.923 12 H 0.087 0.913 13 C 0.090 3.910 14 O -0.582 6.582 15 N -0.672 5.672 16 C 0.063 3.937 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.571 5.571 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.274 1.274 28 N -0.279 5.279 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.041 0.959 32 H 0.105 0.895 33 H 0.148 0.852 34 H 0.231 0.769 35 H 0.166 0.834 36 H 0.406 0.594 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.390 0.610 42 H 0.339 0.661 43 H 0.072 0.928 44 H 0.108 0.892 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.541 -3.246 6.804 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.067 5.067 4 C -0.141 4.141 5 C -0.231 4.231 6 C -0.210 4.210 7 C 0.389 3.611 8 O -0.446 6.446 9 N -0.365 5.365 10 C 0.005 3.995 11 C -0.033 4.033 12 H 0.105 0.895 13 C 0.011 3.989 14 O -0.389 6.389 15 N -0.307 5.307 16 C -0.069 4.069 17 C 0.225 3.775 18 O -0.510 6.510 19 N -0.208 5.208 20 C -0.463 4.463 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.199 1.199 28 N -0.117 5.117 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.166 0.834 34 H 0.247 0.753 35 H 0.184 0.816 36 H 0.242 0.758 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.239 0.761 42 H 0.160 0.840 43 H 0.090 0.910 44 H 0.126 0.874 45 H 0.231 0.769 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 18.600 -3.033 7.161 20.160 hybrid contribution -0.265 -0.531 -0.310 0.670 sum 18.335 -3.564 6.851 19.895 Atomic orbital electron populations 1.22075 0.94119 1.04393 1.02120 1.22447 0.95781 0.74986 1.07465 1.46107 1.31579 1.11078 1.17911 1.23557 0.97348 0.94587 0.98583 1.22018 1.05141 0.97759 0.98221 1.21904 1.04765 0.93062 1.01315 1.17151 0.78515 0.85837 0.79594 1.90743 1.47732 1.36955 1.69133 1.45897 1.47230 1.15090 1.28300 1.21460 0.99529 0.85533 0.92975 1.22061 0.87820 0.97414 0.95958 0.89516 1.22187 0.99014 0.87281 0.90411 1.86572 1.89647 1.24046 1.38639 1.60052 1.20833 1.43012 1.06790 1.21659 0.92062 0.97816 0.95388 1.20858 0.87922 0.82262 0.86488 1.90514 1.77452 1.62291 1.20763 1.41887 1.17304 1.47849 1.13772 1.19635 0.95988 1.32228 0.98475 0.90622 1.25998 1.02716 0.96912 0.95428 1.69665 1.39351 1.40362 1.06588 0.84961 0.77400 0.78025 0.78153 1.19783 1.19303 1.19874 1.73445 1.22256 0.98517 1.17500 0.87858 0.92725 0.93948 0.87704 0.83393 0.75296 0.81623 0.75820 0.89310 0.91666 0.90276 0.92862 0.76096 0.84033 0.91046 0.87449 0.76905 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.02 71.98 0.72 -1.92 16 2 C 0.11 1.19 7.12 86.38 0.61 1.80 16 3 N -0.28 -5.21 3.41 -347.92 -1.19 -6.39 16 4 C 0.00 0.03 11.40 83.54 0.95 0.98 16 5 C -0.20 -4.61 10.81 22.41 0.24 -4.37 16 6 C -0.05 -1.50 7.13 42.45 0.30 -1.20 16 7 C 0.60 19.45 7.83 86.75 0.68 20.13 16 8 O -0.57 -21.10 16.93 -3.94 -0.07 -21.17 16 9 N -0.71 -20.54 4.99 -466.11 -2.32 -22.86 16 10 C 0.13 3.44 5.20 86.38 0.45 3.89 16 11 C 0.08 1.89 2.60 44.92 0.12 2.00 16 12 H 0.09 1.70 7.80 -2.39 -0.02 1.68 16 13 C 0.09 1.89 6.80 71.98 0.49 2.38 16 14 O -0.58 -14.72 12.64 -148.98 -1.88 -16.60 16 15 N -0.67 -22.53 5.87 -495.58 -2.91 -25.45 16 16 C 0.06 2.16 5.96 85.56 0.51 2.67 16 17 C 0.44 21.17 7.82 87.66 0.69 21.86 16 18 O -0.62 -35.87 15.78 -3.08 -0.05 -35.92 16 19 N -0.57 -29.37 5.29 -306.98 -1.62 -30.99 16 20 C -0.33 -19.09 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 22 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 24 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 N -0.28 -7.47 11.36 -48.18 -0.55 -8.01 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.97 8.08 -2.39 -0.02 0.95 16 32 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.15 0.28 8.04 -2.39 -0.02 0.26 16 34 H 0.23 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 36 H 0.41 11.42 7.10 -92.71 -0.66 10.76 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 2.13 7.40 -2.39 -0.02 2.11 16 39 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.05 1.10 7.35 -2.39 -0.02 1.08 16 41 H 0.39 6.16 9.12 -74.06 -0.68 5.49 16 42 H 0.34 12.55 6.41 -89.69 -0.58 11.98 16 43 H 0.07 2.07 8.06 -2.39 -0.02 2.05 16 44 H 0.11 3.26 7.36 -2.39 -0.02 3.24 16 45 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 46 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -84.57 394.95 -2.82 -87.39 By element: Atomic # 1 Polarization: 55.68 SS G_CDS: -1.58 Total: 54.10 kcal Atomic # 6 Polarization: 22.81 SS G_CDS: 7.04 Total: 29.85 kcal Atomic # 7 Polarization: -134.33 SS G_CDS: -8.31 Total: -142.63 kcal Atomic # 8 Polarization: -71.69 SS G_CDS: -2.00 Total: -73.69 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -84.57 -2.82 -87.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734381253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.637 kcal (2) G-P(sol) polarization free energy of solvation -84.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds