Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47155 * 2 1 4 4 C 1.52999 * 109.47493 * 120.00359 * 2 1 3 5 5 H 1.09004 * 109.62809 * 59.60288 * 4 2 1 6 6 C 1.53240 * 109.63528 * 180.02562 * 4 2 1 7 7 N 1.46464 * 109.86300 * 181.71070 * 6 4 2 8 8 C 1.46903 * 111.00194 * 162.23271 * 7 6 4 9 9 C 1.50703 * 109.47176 * 65.35027 * 8 7 6 10 10 O 1.21280 * 119.99870 * 354.58457 * 9 8 7 11 11 N 1.34777 * 120.00256 * 174.58462 * 9 8 7 12 12 C 1.46500 * 120.00018 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46740 * 90.00332 * 12 11 9 14 14 H 1.07994 * 120.00272 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99613 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99748 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99734 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47518 * 300.00125 * 17 15 13 20 20 H 1.48501 * 109.47244 * 60.00419 * 17 15 13 21 21 C 1.46502 * 119.99859 * 359.97438 * 11 9 8 22 22 C 1.53001 * 109.46888 * 270.00101 * 21 11 9 23 23 C 1.47201 * 109.46749 * 179.97438 * 22 21 11 24 24 N 8.98838 * 163.24492 * 294.42357 * 4 1 2 25 25 C 1.46471 * 112.55813 * 287.33883 * 7 6 4 26 26 C 1.53253 * 109.85773 * 72.65343 * 25 7 6 27 27 S 1.81894 * 108.50688 * 298.00261 * 26 25 7 28 28 H 1.09006 * 109.47190 * 299.99611 * 1 2 3 29 29 H 1.08994 * 109.47508 * 59.99610 * 1 2 3 30 30 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46845 * 240.00642 * 2 1 3 32 32 H 1.08999 * 109.47197 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47493 * 300.00301 * 3 2 1 34 34 H 1.09006 * 109.46754 * 60.00122 * 3 2 1 35 35 H 1.09002 * 109.40832 * 61.58322 * 6 4 2 36 36 H 1.09007 * 109.40678 * 301.82699 * 6 4 2 37 37 H 1.08996 * 109.47364 * 305.35211 * 8 7 6 38 38 H 1.08999 * 109.46782 * 185.34854 * 8 7 6 39 39 H 1.08991 * 109.47293 * 330.00022 * 12 11 9 40 40 H 1.08994 * 109.46884 * 209.99747 * 12 11 9 41 41 H 0.96997 * 120.00420 * 359.97438 * 16 15 13 42 42 H 1.09010 * 109.46803 * 29.99556 * 21 11 9 43 43 H 1.08997 * 109.47067 * 149.99728 * 21 11 9 44 44 H 1.08996 * 109.47160 * 299.99911 * 22 21 11 45 45 H 1.08997 * 109.47224 * 60.00353 * 22 21 11 46 46 H 1.08998 * 109.40786 * 192.77876 * 25 7 6 47 47 H 1.09000 * 109.40556 * 312.54246 * 25 7 6 48 48 H 1.08993 * 109.63043 * 178.28791 * 26 25 7 49 49 H 1.09004 * 109.78899 * 57.79936 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6724 -1.7474 1.2553 6 6 3.5725 -0.7229 1.2532 7 7 4.0663 -1.4477 2.4262 8 6 5.4736 -1.8322 2.2536 9 6 6.3291 -0.5930 2.1932 10 8 5.8095 0.5028 2.1859 11 7 7.6716 -0.7025 2.1472 12 6 8.5032 0.5021 2.0879 13 6 8.8398 0.9494 3.4871 14 1 8.4708 0.3924 4.3356 15 6 9.6189 2.0699 3.6840 16 7 10.0677 2.7484 2.6507 17 14 10.0355 2.6248 5.4183 18 1 10.8796 3.8451 5.3582 19 1 8.7824 2.9249 6.1565 20 1 10.7763 1.5452 6.1189 21 6 8.2993 -2.0262 2.1566 22 6 8.5699 -2.4521 3.6010 23 6 9.2000 -3.7824 3.6103 24 7 9.6862 -4.8117 3.6148 25 6 3.8756 -0.6991 3.6706 26 6 2.3914 -0.6937 4.0526 27 16 1.4598 0.1491 2.7372 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.9357 0.3044 1.2828 36 1 3.9366 -1.2085 0.3477 37 1 5.5852 -2.3962 1.3276 38 1 5.7873 -2.4496 3.0953 39 1 7.9590 1.2944 1.5742 40 1 9.4228 0.2824 1.5457 41 1 9.8511 2.4605 1.7501 42 1 7.6327 -2.7477 1.6839 43 1 9.2398 -1.9862 1.6072 44 1 9.2363 -1.7307 4.0737 45 1 7.6294 -2.4922 4.1503 46 1 4.4530 -1.1679 4.4674 47 1 4.2176 0.3265 3.5324 48 1 2.2577 -0.1619 4.9946 49 1 2.0333 -1.7180 4.1564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072836442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = -12.585658 kcal Electronic energy + Delta-G solvation = -28528.034901 eV Core-core repulsion = 24809.165326 eV Total energy + Delta-G solvation = -3718.869575 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.10753 -37.90547 -36.81541 -36.02995 -35.22166 -33.21722 -31.20508 -30.86208 -29.97918 -27.49288 -27.22495 -25.54124 -23.94199 -23.64824 -22.87239 -21.08456 -20.31497 -18.85960 -17.78844 -17.14109 -16.78262 -16.41888 -15.85660 -15.65436 -15.46866 -15.01153 -14.64988 -14.46282 -14.15575 -13.92991 -13.80158 -13.48162 -13.43823 -13.08428 -12.83076 -12.76590 -12.52124 -12.49942 -12.39958 -12.12709 -12.01409 -11.85188 -11.77271 -11.50234 -11.41304 -11.18188 -11.09945 -11.04733 -10.84995 -10.74371 -10.65474 -10.48398 -10.19344 -9.88190 -9.53122 -9.28704 -8.49771 -8.09919 -7.91614 -7.52326 -6.49243 -4.23562 1.81098 2.58102 2.69617 2.81865 3.06881 3.35160 3.39196 3.49997 3.56594 3.71600 4.14889 4.43723 4.65121 4.67285 4.78816 4.90483 4.94487 4.99944 5.03726 5.14034 5.19379 5.25417 5.26849 5.37128 5.38669 5.41411 5.47899 5.52320 5.61247 5.62973 5.73162 5.79192 5.83672 5.89548 5.98320 6.04895 6.10431 6.20114 6.26271 6.41085 6.58072 6.80934 6.96381 6.97412 7.15754 7.58576 7.88082 8.00143 8.27079 8.62770 8.74552 9.46566 10.87867 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.003615 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.144892 B = 7744.514583 C = 9005.175972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.154 4.154 4 C -0.034 4.034 5 H 0.089 0.911 6 C 0.044 3.956 7 N -0.528 5.528 8 C 0.036 3.964 9 C 0.475 3.525 10 O -0.528 6.528 11 N -0.591 5.591 12 C 0.234 3.766 13 C -0.609 4.609 14 H 0.054 0.946 15 C 0.023 3.977 16 N -0.906 5.906 17 Si 1.066 2.934 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.287 1.287 21 C 0.123 3.877 22 C -0.051 4.051 23 C 0.217 3.783 24 N -0.449 5.449 25 C 0.043 3.957 26 C -0.077 4.077 27 S -0.260 6.260 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.034 0.966 40 H 0.022 0.978 41 H 0.268 0.732 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.131 0.869 45 H 0.104 0.896 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 -9.237 -2.962 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.095 4.095 3 C -0.211 4.211 4 C -0.163 4.163 5 H 0.107 0.893 6 C -0.085 4.085 7 N -0.251 5.251 8 C -0.096 4.096 9 C 0.261 3.739 10 O -0.405 6.405 11 N -0.323 5.323 12 C 0.115 3.885 13 C -0.647 4.647 14 H 0.072 0.928 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.894 3.106 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.214 1.214 21 C -0.003 4.003 22 C -0.093 4.093 23 C -0.101 4.101 24 N -0.127 5.127 25 C -0.086 4.086 26 C -0.226 4.226 27 S -0.033 6.033 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.149 0.851 45 H 0.122 0.878 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.122 0.878 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.559 -8.588 -1.960 17.016 hybrid contribution 0.491 -1.228 -0.829 1.560 sum -14.068 -9.816 -2.789 17.379 Atomic orbital electron populations 1.21867 0.94602 1.01828 1.02170 1.20941 0.96172 0.96934 0.95484 1.21978 1.01891 0.95112 1.02161 1.23329 0.97662 1.01002 0.94348 0.89284 1.22560 0.92609 1.00824 0.92501 1.61607 1.15780 1.44591 1.03099 1.22386 0.87063 0.95816 1.04314 1.21661 0.83128 0.91674 0.77446 1.90649 1.71896 1.28575 1.49394 1.48175 1.05870 1.07160 1.71102 1.19408 0.88920 0.81926 0.98291 1.22186 1.35982 1.14741 0.91828 0.92802 1.25748 0.93749 0.93230 1.05460 1.70809 1.43555 1.40258 0.99491 0.83570 0.76501 0.76536 0.73979 1.20677 1.21359 1.21370 1.21276 0.99819 0.85269 0.93984 1.19953 1.02084 0.86195 1.01024 1.29327 0.93178 0.94576 0.93010 1.81296 1.10099 1.12512 1.08747 1.22394 0.94480 1.00406 0.91360 1.23499 0.97080 1.03123 0.98904 1.86721 1.60121 1.53336 1.03137 0.91665 0.92607 0.92730 0.90363 0.91893 0.92921 0.91247 0.89442 0.90856 0.88168 0.88143 0.94763 0.95997 0.92153 0.90711 0.89553 0.85131 0.87791 0.90438 0.89936 0.87838 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.97 37.16 0.33 -1.02 16 2 C -0.08 -0.77 2.76 -90.62 -0.25 -1.02 16 3 C -0.15 -1.77 8.59 37.16 0.32 -1.45 16 4 C -0.03 -0.39 2.58 -26.61 -0.07 -0.46 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.04 0.57 3.69 -3.94 -0.01 0.55 16 7 N -0.53 -6.64 4.58 -236.48 -1.08 -7.72 16 8 C 0.04 0.43 4.20 -4.97 -0.02 0.41 16 9 C 0.48 7.90 7.09 -10.98 -0.08 7.82 16 10 O -0.53 -10.97 11.61 5.56 0.06 -10.90 16 11 N -0.59 -10.03 2.46 -175.06 -0.43 -10.45 16 12 C 0.23 5.25 4.52 -5.19 -0.02 5.23 16 13 C -0.61 -15.20 8.92 -34.44 -0.31 -15.51 16 14 H 0.05 1.31 7.42 -52.49 -0.39 0.92 16 15 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 16 N -0.91 -25.87 13.65 55.43 0.76 -25.11 16 17 Si 1.07 23.79 29.90 -169.99 -5.08 18.71 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16 21 C 0.12 1.52 5.14 -4.04 -0.02 1.50 16 22 C -0.05 -0.60 5.98 -29.52 -0.18 -0.77 16 23 C 0.22 2.74 15.44 -20.68 -0.32 2.42 16 24 N -0.45 -6.76 18.55 42.25 0.78 -5.97 16 25 C 0.04 0.57 4.72 -3.93 -0.02 0.55 16 26 C -0.08 -0.90 6.69 37.29 0.25 -0.65 16 27 S -0.26 -3.28 18.85 -107.50 -2.03 -5.30 16 28 H 0.06 0.67 6.97 -51.93 -0.36 0.31 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.82 6.48 -51.93 -0.34 0.48 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.88 6.89 -51.93 -0.36 0.52 16 35 H 0.09 1.41 4.37 -51.93 -0.23 1.18 16 36 H 0.07 0.87 7.83 -51.92 -0.41 0.47 16 37 H 0.10 1.00 7.48 -51.93 -0.39 0.61 16 38 H 0.10 1.01 6.81 -51.93 -0.35 0.66 16 39 H 0.03 0.89 7.29 -51.93 -0.38 0.51 16 40 H 0.02 0.50 7.76 -51.93 -0.40 0.10 16 41 H 0.27 7.59 7.22 -40.82 -0.29 7.29 16 42 H 0.07 0.70 6.59 -51.92 -0.34 0.36 16 43 H 0.09 1.08 7.89 -51.93 -0.41 0.67 16 44 H 0.13 1.80 7.26 -51.93 -0.38 1.42 16 45 H 0.10 1.04 7.13 -51.93 -0.37 0.67 16 46 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 47 H 0.08 1.42 5.99 -51.93 -0.31 1.11 16 48 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 391.93 15.07 5.91 5.91 Total: -1.00 -30.69 391.93 -9.48 -40.17 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.87 Total: 2.56 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.49 Total: -1.87 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.03 Total: -49.26 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.06 Total: -10.90 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -5.08 Total: 18.71 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -2.03 Total: -5.30 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.69 -9.48 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072836442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.580 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds