Wall clock time and date at job start Sat Apr 11 2020 05:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47155 * 2 1 4 4 C 1.52999 * 109.47493 * 120.00359 * 2 1 3 5 5 H 1.09004 * 109.62809 * 59.60288 * 4 2 1 6 6 C 1.53240 * 109.63528 * 180.02562 * 4 2 1 7 7 N 1.46464 * 109.86300 * 181.71070 * 6 4 2 8 8 C 1.46903 * 111.00194 * 162.23271 * 7 6 4 9 9 C 1.50703 * 109.47176 * 65.35027 * 8 7 6 10 10 O 1.21280 * 119.99870 * 354.58457 * 9 8 7 11 11 N 1.34777 * 120.00256 * 174.58462 * 9 8 7 12 12 C 1.46500 * 120.00018 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46740 * 90.00332 * 12 11 9 14 14 H 1.07994 * 120.00272 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99613 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99748 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99734 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46828 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47518 * 300.00125 * 17 15 13 20 20 H 1.48501 * 109.47244 * 60.00419 * 17 15 13 21 21 C 1.46502 * 119.99859 * 359.97438 * 11 9 8 22 22 C 1.53001 * 109.46888 * 270.00101 * 21 11 9 23 23 C 1.47201 * 109.46749 * 179.97438 * 22 21 11 24 24 N 8.98838 * 163.24492 * 294.42357 * 4 1 2 25 25 C 1.46471 * 112.55813 * 287.33883 * 7 6 4 26 26 C 1.53253 * 109.85773 * 72.65343 * 25 7 6 27 27 S 1.81894 * 108.50688 * 298.00261 * 26 25 7 28 28 H 1.09006 * 109.47190 * 299.99611 * 1 2 3 29 29 H 1.08994 * 109.47508 * 59.99610 * 1 2 3 30 30 H 1.09002 * 109.47231 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46845 * 240.00642 * 2 1 3 32 32 H 1.08999 * 109.47197 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47493 * 300.00301 * 3 2 1 34 34 H 1.09006 * 109.46754 * 60.00122 * 3 2 1 35 35 H 1.09002 * 109.40832 * 61.58322 * 6 4 2 36 36 H 1.09007 * 109.40678 * 301.82699 * 6 4 2 37 37 H 1.08996 * 109.47364 * 305.35211 * 8 7 6 38 38 H 1.08999 * 109.46782 * 185.34854 * 8 7 6 39 39 H 1.08991 * 109.47293 * 330.00022 * 12 11 9 40 40 H 1.08994 * 109.46884 * 209.99747 * 12 11 9 41 41 H 0.96997 * 120.00420 * 359.97438 * 16 15 13 42 42 H 1.09010 * 109.46803 * 29.99556 * 21 11 9 43 43 H 1.08997 * 109.47067 * 149.99728 * 21 11 9 44 44 H 1.08996 * 109.47160 * 299.99911 * 22 21 11 45 45 H 1.08997 * 109.47224 * 60.00353 * 22 21 11 46 46 H 1.08998 * 109.40786 * 192.77876 * 25 7 6 47 47 H 1.09000 * 109.40556 * 312.54246 * 25 7 6 48 48 H 1.08993 * 109.63043 * 178.28791 * 26 25 7 49 49 H 1.09004 * 109.78899 * 57.79936 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6724 -1.7474 1.2553 6 6 3.5725 -0.7229 1.2532 7 7 4.0663 -1.4477 2.4262 8 6 5.4736 -1.8322 2.2536 9 6 6.3291 -0.5930 2.1932 10 8 5.8095 0.5028 2.1859 11 7 7.6716 -0.7025 2.1472 12 6 8.5032 0.5021 2.0879 13 6 8.8398 0.9494 3.4871 14 1 8.4708 0.3924 4.3356 15 6 9.6189 2.0699 3.6840 16 7 10.0677 2.7484 2.6507 17 14 10.0355 2.6248 5.4183 18 1 10.8796 3.8451 5.3582 19 1 8.7824 2.9249 6.1565 20 1 10.7763 1.5452 6.1189 21 6 8.2993 -2.0262 2.1566 22 6 8.5699 -2.4521 3.6010 23 6 9.2000 -3.7824 3.6103 24 7 9.6862 -4.8117 3.6148 25 6 3.8756 -0.6991 3.6706 26 6 2.3914 -0.6937 4.0526 27 16 1.4598 0.1491 2.7372 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 3.9357 0.3044 1.2828 36 1 3.9366 -1.2085 0.3477 37 1 5.5852 -2.3962 1.3276 38 1 5.7873 -2.4496 3.0953 39 1 7.9590 1.2944 1.5742 40 1 9.4228 0.2824 1.5457 41 1 9.8511 2.4605 1.7501 42 1 7.6327 -2.7477 1.6839 43 1 9.2398 -1.9862 1.6072 44 1 9.2363 -1.7307 4.0737 45 1 7.6294 -2.4922 4.1503 46 1 4.4530 -1.1679 4.4674 47 1 4.2176 0.3265 3.5324 48 1 2.2577 -0.1619 4.9946 49 1 2.0333 -1.7180 4.1564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072836442.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:58 Heat of formation + Delta-G solvation = -30.787812 kcal Electronic energy + Delta-G solvation = -28528.824206 eV Core-core repulsion = 24809.165326 eV Total energy + Delta-G solvation = -3719.658880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35181 -38.99842 -37.91865 -37.05850 -36.50177 -35.08640 -32.26153 -32.08953 -30.97287 -29.03893 -28.09705 -26.81716 -25.18723 -24.59817 -24.54162 -22.18231 -21.19525 -20.13484 -19.25345 -18.46654 -18.04326 -17.62406 -16.92054 -16.67676 -16.53867 -16.11716 -15.81814 -15.67691 -15.57842 -15.25702 -14.95467 -14.64480 -14.57318 -14.29028 -14.00376 -13.86349 -13.60429 -13.57465 -13.50283 -13.35499 -13.16649 -13.00915 -12.96774 -12.71902 -12.63892 -12.46190 -12.43737 -12.04842 -11.97228 -11.93955 -11.85888 -11.66319 -11.44094 -11.18141 -11.09282 -10.53368 -10.47583 -9.49131 -9.26973 -8.58143 -8.51263 -6.34003 0.87992 1.54173 1.60700 1.61854 1.65591 1.78924 1.80571 1.85932 2.22465 2.59022 2.71718 3.08908 3.20255 3.68539 3.76326 3.79912 3.97881 4.00932 4.05565 4.10037 4.15819 4.25504 4.33893 4.44664 4.48314 4.50235 4.57474 4.65604 4.70408 4.75989 4.79034 4.81464 4.83731 4.97160 5.03132 5.04999 5.05718 5.08338 5.13569 5.22068 5.42485 5.46421 5.59180 5.78506 5.90663 5.92111 6.25461 6.54916 6.58407 6.68100 7.35590 7.48342 8.77125 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010492 B = 0.003615 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.144892 B = 7744.514583 C = 9005.175972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.073 4.073 3 C -0.149 4.149 4 C -0.022 4.022 5 H 0.102 0.898 6 C 0.046 3.954 7 N -0.516 5.516 8 C 0.043 3.957 9 C 0.470 3.530 10 O -0.576 6.576 11 N -0.594 5.594 12 C 0.247 3.753 13 C -0.601 4.601 14 H 0.061 0.939 15 C -0.031 4.031 16 N -0.940 5.940 17 Si 1.108 2.892 18 H -0.291 1.291 19 H -0.280 1.280 20 H -0.259 1.259 21 C 0.118 3.882 22 C -0.040 4.040 23 C 0.246 3.754 24 N -0.487 5.487 25 C 0.046 3.954 26 C -0.068 4.068 27 S -0.296 6.296 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.132 0.868 38 H 0.132 0.868 39 H -0.010 1.010 40 H 0.017 0.983 41 H 0.255 0.745 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.130 0.870 46 H 0.090 0.910 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.041 -12.272 -2.364 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.093 4.093 3 C -0.207 4.207 4 C -0.151 4.151 5 H 0.120 0.880 6 C -0.083 4.083 7 N -0.238 5.238 8 C -0.088 4.088 9 C 0.258 3.742 10 O -0.456 6.456 11 N -0.325 5.325 12 C 0.125 3.875 13 C -0.640 4.640 14 H 0.079 0.921 15 C -0.229 4.229 16 N -0.578 5.578 17 Si 0.930 3.070 18 H -0.217 1.217 19 H -0.206 1.206 20 H -0.184 1.184 21 C -0.006 4.006 22 C -0.081 4.081 23 C -0.071 4.071 24 N -0.165 5.165 25 C -0.083 4.083 26 C -0.216 4.216 27 S -0.070 6.070 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.008 0.992 40 H 0.035 0.965 41 H 0.065 0.935 42 H 0.136 0.864 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.148 0.852 46 H 0.109 0.891 47 H 0.057 0.943 48 H 0.128 0.872 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.811 -11.686 -1.361 19.708 hybrid contribution 0.847 -0.256 -1.066 1.385 sum -14.965 -11.942 -2.426 19.299 Atomic orbital electron populations 1.21812 0.93502 1.02564 1.02028 1.20977 0.97009 0.95715 0.95605 1.21913 1.00346 0.96510 1.01929 1.23328 0.96481 1.01391 0.93856 0.87995 1.22497 0.93639 0.98982 0.93197 1.61735 1.15838 1.43596 1.02624 1.22620 0.85459 0.93511 1.07226 1.22666 0.82942 0.92752 0.75882 1.90666 1.72708 1.31030 1.51177 1.48103 1.05906 1.07184 1.71269 1.18870 0.88755 0.83404 0.96438 1.22535 1.34287 1.14013 0.93156 0.92087 1.27067 0.94051 0.93918 1.07904 1.70923 1.45784 1.41605 0.99447 0.83039 0.76665 0.76609 0.70648 1.21694 1.20628 1.18405 1.21555 1.00647 0.83580 0.94863 1.19846 1.02735 0.84957 1.00592 1.29234 0.92078 0.94059 0.91768 1.81345 1.11291 1.13828 1.10030 1.22301 0.95698 0.98148 0.92181 1.23490 0.95627 1.03951 0.98557 1.86904 1.60422 1.54802 1.04885 0.93050 0.91523 0.91509 0.88678 0.94144 0.91622 0.92973 0.93076 0.89523 0.85011 0.85022 0.99199 0.96546 0.93530 0.86431 0.89814 0.87095 0.85173 0.89128 0.94295 0.87223 0.87960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.97 71.98 0.65 -1.69 16 2 C -0.07 -1.39 2.76 -10.80 -0.03 -1.42 16 3 C -0.15 -3.50 8.59 71.98 0.62 -2.88 16 4 C -0.02 -0.46 2.58 30.67 0.08 -0.38 16 5 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 6 C 0.05 1.13 3.69 86.47 0.32 1.45 16 7 N -0.52 -11.68 4.58 -902.09 -4.14 -15.82 16 8 C 0.04 0.87 4.20 85.56 0.36 1.23 16 9 C 0.47 15.13 7.09 87.66 0.62 15.75 16 10 O -0.58 -24.69 11.61 -3.03 -0.04 -24.73 16 11 N -0.59 -19.55 2.46 -826.15 -2.03 -21.58 16 12 C 0.25 11.41 4.52 85.63 0.39 11.79 16 13 C -0.60 -30.34 8.92 25.60 0.23 -30.11 16 14 H 0.06 2.93 7.42 -2.91 -0.02 2.91 16 15 C -0.03 -1.68 5.46 84.66 0.46 -1.21 16 16 N -0.94 -55.59 13.65 21.45 0.29 -55.30 16 17 Si 1.11 47.96 29.90 68.60 2.05 50.01 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 20 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 21 C 0.12 2.58 5.14 86.38 0.44 3.02 16 22 C -0.04 -0.81 5.98 28.79 0.17 -0.64 16 23 C 0.25 5.49 15.44 89.41 1.38 6.87 16 24 N -0.49 -13.50 18.55 20.03 0.37 -13.13 16 25 C 0.05 1.17 4.72 86.47 0.41 1.58 16 26 C -0.07 -1.48 6.69 72.07 0.48 -1.00 16 27 S -0.30 -7.35 18.85 -56.49 -1.07 -8.41 16 28 H 0.05 1.00 6.97 -2.38 -0.02 0.99 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.11 6.48 -2.39 -0.02 1.10 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.39 6.89 -2.38 -0.02 1.37 16 35 H 0.05 1.70 4.37 -2.39 -0.01 1.69 16 36 H 0.09 1.87 7.83 -2.38 -0.02 1.85 16 37 H 0.13 1.94 7.48 -2.39 -0.02 1.93 16 38 H 0.13 1.93 6.81 -2.39 -0.02 1.91 16 39 H -0.01 -0.55 7.29 -2.39 -0.02 -0.57 16 40 H 0.02 0.78 7.76 -2.39 -0.02 0.76 16 41 H 0.26 15.23 7.22 -92.71 -0.67 14.57 16 42 H 0.12 1.63 6.59 -2.38 -0.02 1.61 16 43 H 0.08 1.91 7.89 -2.39 -0.02 1.89 16 44 H 0.11 2.82 7.26 -2.39 -0.02 2.80 16 45 H 0.13 2.00 7.13 -2.39 -0.02 1.98 16 46 H 0.09 2.03 7.90 -2.39 -0.02 2.01 16 47 H 0.04 1.37 5.99 -2.39 -0.01 1.35 16 48 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 Total: -1.00 -71.45 391.93 3.07 -68.38 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 1.04 Total: 18.21 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.58 Total: 2.37 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -5.50 Total: -105.83 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.05 Total: 50.01 kcal Atomic # 16 Polarization: -7.35 SS G_CDS: -1.07 Total: -8.41 kcal Total: -71.45 3.07 -68.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072836442.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.589 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds