Wall clock time and date at job start Sat Apr 11 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81398 * 103.00230 * 2 1 4 4 C 1.52996 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47213 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.46986 * 180.02562 * 5 4 3 7 7 C 1.34784 * 119.99741 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00093 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99865 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47110 * 179.97438 * 9 7 6 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.39862 * 126.04094 * 269.68901 * 11 10 9 13 13 C 1.50702 * 125.90180 * 0.02562 * 12 11 10 14 14 N 1.30842 * 108.19992 * 179.81747 * 12 11 10 15 15 N 1.40084 * 108.20663 * 0.44091 * 14 12 11 16 16 C 1.46495 * 126.04013 * 179.73793 * 15 14 12 17 17 C 1.50699 * 109.47131 * 269.98016 * 16 15 14 18 18 H 1.08002 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47257 * 89.99976 * 21 19 17 23 23 H 1.48501 * 109.46940 * 210.00122 * 21 19 17 24 24 H 1.48499 * 109.47462 * 329.99632 * 21 19 17 25 25 C 1.34950 * 107.92381 * 359.71898 * 15 14 12 26 26 C 1.50694 * 126.12576 * 179.97438 * 25 15 14 27 27 H 1.09001 * 109.47069 * 59.99702 * 1 2 3 28 28 H 1.08999 * 109.46996 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46902 * 299.99960 * 1 2 3 30 30 H 1.09008 * 109.46939 * 59.99938 * 3 2 1 31 31 H 1.09003 * 109.46807 * 300.00348 * 3 2 1 32 32 H 1.09005 * 109.46552 * 60.00189 * 4 3 2 33 33 H 1.08991 * 109.47305 * 300.00300 * 4 3 2 34 34 H 1.09000 * 109.47214 * 59.99786 * 5 4 3 35 35 H 1.09000 * 109.46955 * 300.00002 * 5 4 3 36 36 H 0.96998 * 120.00681 * 359.97438 * 6 5 4 37 37 H 1.09000 * 109.47543 * 59.99570 * 9 7 6 38 38 H 1.09008 * 109.47338 * 300.00084 * 9 7 6 39 39 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 40 40 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 41 41 H 1.08998 * 109.47393 * 89.99256 * 13 12 11 42 42 H 1.09001 * 109.46747 * 209.99996 * 13 12 11 43 43 H 1.08998 * 109.46776 * 329.99757 * 13 12 11 44 44 H 1.09001 * 109.47188 * 29.97306 * 16 15 14 45 45 H 1.08997 * 109.47530 * 149.97532 * 16 15 14 46 46 H 0.96999 * 120.00262 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.47170 * 270.02464 * 26 25 15 48 48 H 1.09004 * 109.47112 * 30.02444 * 26 25 15 49 49 H 1.09003 * 109.46820 * 150.02019 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0866 3.4306 0.0013 6 7 5.5422 3.5957 0.0013 7 6 6.0803 4.8314 0.0023 8 8 5.3594 5.8068 0.0028 9 6 7.5777 5.0012 0.0029 10 6 7.9219 6.4920 0.0034 11 6 9.4194 6.6618 0.0047 12 6 10.2355 6.7604 1.1362 13 6 9.7694 6.7147 2.5686 14 7 11.4740 6.8947 0.7364 15 7 11.4841 6.8960 -0.6644 16 6 12.6673 7.0297 -1.5178 17 6 12.9131 8.4874 -1.8107 18 1 12.2537 9.2389 -1.4023 19 6 13.9800 8.8616 -2.5999 20 7 14.7833 7.9465 -3.0967 21 14 14.2843 10.6684 -2.9636 22 1 15.1746 11.2400 -1.9215 23 1 14.9293 10.8037 -4.2943 24 1 12.9909 11.3980 -2.9641 25 6 10.2112 6.7517 -1.0890 26 6 9.7537 6.7005 -2.5239 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8032 2.2371 0.8901 31 1 1.8032 2.2371 -0.8900 32 1 4.1616 1.4701 -0.8892 33 1 4.1609 1.4703 0.8907 34 1 3.6673 3.9000 0.8912 35 1 3.6680 3.9005 -0.8887 36 1 6.1189 2.8157 0.0013 37 1 7.9970 4.5322 -0.8872 38 1 7.9964 4.5309 0.8927 39 1 7.5027 6.9613 0.8934 40 1 7.5034 6.9618 -0.8866 41 1 9.7730 5.6827 2.9192 42 1 10.4393 7.3113 3.1878 43 1 8.7586 7.1173 2.6348 44 1 13.5337 6.6110 -1.0058 45 1 12.5036 6.4938 -2.4526 46 1 15.5336 8.2097 -3.6522 47 1 9.5279 7.7093 -2.8695 48 1 10.5432 6.2729 -3.1419 49 1 8.8591 6.0821 -2.5981 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123715275.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:37 Heat of formation + Delta-G solvation = 0.201496 kcal Electronic energy + Delta-G solvation = -26059.961106 eV Core-core repulsion = 22341.646023 eV Total energy + Delta-G solvation = -3718.315083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.61950 -39.73551 -36.23700 -34.37705 -33.40291 -32.98008 -32.48137 -30.30464 -29.50799 -28.96405 -27.48011 -26.07705 -25.85674 -23.68362 -22.34686 -22.02944 -20.35863 -18.79973 -18.63121 -17.09192 -16.93951 -16.68644 -16.42472 -15.92093 -15.57458 -15.30810 -14.58582 -14.42179 -14.27278 -14.22544 -13.93673 -13.74661 -13.66512 -13.14495 -13.03247 -12.89209 -12.57391 -12.49012 -12.44012 -12.29232 -12.11716 -11.81487 -11.78596 -11.64233 -11.53224 -11.33150 -11.24805 -10.96833 -10.79772 -10.71260 -10.53354 -10.25942 -9.92112 -9.72700 -9.59610 -9.30669 -8.64770 -8.22107 -8.17409 -7.46732 -6.26523 -4.33782 1.09901 2.03707 2.59825 2.75648 2.98451 3.21516 3.27695 3.32040 3.41383 3.62390 4.28353 4.29658 4.35908 4.45179 4.59483 4.62035 4.82127 4.88546 4.97552 5.07274 5.16815 5.20199 5.21311 5.28174 5.34825 5.41439 5.52080 5.60047 5.66158 5.78034 5.83425 5.94977 5.98699 6.03380 6.07170 6.17504 6.24939 6.37729 6.46838 6.55894 6.86418 7.03297 7.12357 7.30059 7.52343 7.66422 7.88459 8.06226 8.12768 8.67302 8.75862 9.32710 10.81079 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.001611 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.662650 B =17379.202727 C =17795.384352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.264 6.264 3 C -0.082 4.082 4 C -0.116 4.116 5 C 0.124 3.876 6 N -0.738 5.738 7 C 0.514 3.486 8 O -0.540 6.540 9 C -0.133 4.133 10 C -0.010 4.010 11 C -0.269 4.269 12 C 0.050 3.950 13 C -0.064 4.064 14 N -0.297 5.297 15 N -0.325 5.325 16 C 0.257 3.743 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.066 3.934 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.094 3.906 26 C -0.086 4.086 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.268 0.732 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.241 -15.120 5.398 29.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.038 6.038 3 C -0.231 4.231 4 C -0.155 4.155 5 C -0.001 4.001 6 N -0.391 5.391 7 C 0.301 3.699 8 O -0.416 6.416 9 C -0.174 4.174 10 C -0.049 4.049 11 C -0.281 4.281 12 C -0.114 4.114 13 C -0.123 4.123 14 N -0.121 5.121 15 N -0.104 5.104 16 C 0.139 3.861 17 C -0.574 4.574 18 H 0.082 0.918 19 C -0.137 4.137 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.197 1.197 25 C -0.038 4.038 26 C -0.144 4.144 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.236 0.764 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.562 -15.163 5.545 28.563 hybrid contribution -1.028 1.437 -0.581 1.860 sum -24.590 -13.725 4.965 28.595 Atomic orbital electron populations 1.23388 0.93889 1.06658 1.05053 1.86985 1.07685 1.11058 1.98102 1.23278 0.99705 0.94577 1.05551 1.21509 0.93418 0.96271 1.04318 1.21236 0.81359 0.94914 1.02626 1.46061 1.07274 1.08759 1.77035 1.21079 0.91588 0.82328 0.74868 1.90698 1.63238 1.38766 1.48883 1.21754 0.90193 1.00917 1.04491 1.19389 0.90324 0.92410 1.02823 1.19349 0.95463 1.21991 0.91332 1.21946 0.91122 1.02395 0.95959 1.20024 1.00763 1.01820 0.89692 1.77275 1.19880 1.24501 0.90442 1.49239 1.06854 1.50543 1.03785 1.19651 0.80095 0.98542 0.87808 1.21312 1.12952 0.91279 1.31867 0.91799 1.24921 0.95187 0.98515 0.95120 1.69916 1.16215 1.33264 1.33603 0.86357 0.78647 0.83989 0.77720 1.20299 1.20871 1.19664 1.20778 0.85799 1.00982 0.96242 1.20349 1.01081 1.02998 0.89989 0.90372 0.87985 0.90390 0.89610 0.89589 0.90100 0.90126 0.91380 0.91371 0.76416 0.89007 0.88925 0.91288 0.91416 0.91611 0.91587 0.91244 0.93081 0.93095 0.92267 0.90457 0.90942 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.76 101.05 1.09 0.60 16 2 S -0.26 -1.71 22.38 -107.50 -2.41 -4.12 16 3 C -0.08 -0.41 5.94 37.16 0.22 -0.19 16 4 C -0.12 -0.60 5.34 -26.73 -0.14 -0.74 16 5 C 0.12 0.87 5.67 -4.04 -0.02 0.85 16 6 N -0.74 -5.87 5.56 -60.30 -0.33 -6.20 16 7 C 0.51 5.84 7.83 -10.98 -0.09 5.75 16 8 O -0.54 -8.21 15.98 5.56 0.09 -8.12 16 9 C -0.13 -1.48 5.68 -27.89 -0.16 -1.63 16 10 C -0.01 -0.15 4.41 -27.88 -0.12 -0.27 16 11 C -0.27 -4.79 5.35 -105.05 -0.56 -5.35 16 12 C 0.05 0.95 7.22 -82.41 -0.59 0.36 16 13 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 14 N -0.30 -6.83 12.58 33.67 0.42 -6.41 16 15 N -0.32 -7.57 3.60 -58.32 -0.21 -7.78 16 16 C 0.26 6.59 6.00 -5.20 -0.03 6.56 16 17 C -0.54 -14.86 9.39 -34.44 -0.32 -15.18 16 18 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 21 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.09 1.85 6.93 -82.26 -0.57 1.28 16 26 C -0.09 -1.41 9.72 36.00 0.35 -1.06 16 27 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 28 H 0.10 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.40 2.21 8.47 -40.82 -0.35 1.86 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 39 H 0.07 0.99 7.20 -51.93 -0.37 0.62 16 40 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.86 7.25 -51.93 -0.38 0.49 16 44 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 45 H 0.05 1.29 7.05 -51.93 -0.37 0.92 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.07 1.21 7.08 -51.93 -0.37 0.84 16 49 H 0.07 0.93 7.77 -51.93 -0.40 0.53 16 LS Contribution 421.00 15.07 6.34 6.34 Total: -1.00 -33.34 421.00 -9.58 -42.93 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.52 Total: -0.61 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.68 Total: -7.86 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.62 Total: -44.79 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.41 Total: -4.12 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.34 -9.58 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123715275.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.128 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds