Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 N 1.46895 * 109.47345 * 120.00561 * 2 1 3 5 5 C 1.46898 * 111.00125 * 298.94971 * 4 2 1 6 6 C 1.46904 * 110.99923 * 174.99483 * 4 2 1 7 7 C 1.52994 * 109.47151 * 189.99699 * 6 4 2 8 8 N 1.46501 * 109.47332 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47015 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46901 * 119.99536 * 24 22 20 27 27 H 1.48498 * 109.47335 * 239.99890 * 24 22 20 28 28 H 1.09010 * 109.46868 * 299.99301 * 1 2 3 29 29 H 1.09004 * 109.47649 * 59.99571 * 1 2 3 30 30 H 1.09006 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46868 * 240.00699 * 2 1 3 32 32 H 1.09005 * 109.47010 * 60.00471 * 3 2 1 33 33 H 1.08997 * 109.47604 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47541 * 300.01037 * 3 2 1 35 35 H 1.09000 * 109.46926 * 296.05145 * 5 4 2 36 36 H 1.08998 * 109.46941 * 56.04450 * 5 4 2 37 37 H 1.08994 * 109.47414 * 176.04736 * 5 4 2 38 38 H 1.09001 * 109.46546 * 70.00177 * 6 4 2 39 39 H 1.09002 * 109.47595 * 310.00281 * 6 4 2 40 40 H 1.09007 * 109.47267 * 60.00399 * 7 6 4 41 41 H 1.09001 * 109.47776 * 300.00416 * 7 6 4 42 42 H 0.97005 * 119.99663 * 0.02562 * 8 7 6 43 43 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 44 44 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 45 45 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 46 46 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 47 47 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 1.5693 -0.0123 2.4209 6 6 3.4832 -0.8166 1.1749 7 6 3.9347 -1.7507 2.2993 8 7 5.3944 -1.8740 2.2753 9 6 6.0200 -2.6513 3.1812 10 8 5.3730 -3.2508 4.0182 11 7 7.3632 -2.7603 3.1626 12 6 8.0210 -3.4894 4.1624 13 6 7.4270 -4.6202 4.7028 14 6 8.0791 -5.3417 5.6846 15 6 9.3218 -4.9322 6.1403 16 9 9.9526 -5.6383 7.1040 17 6 9.9184 -3.8020 5.6103 18 6 9.2716 -3.0760 4.6207 19 8 9.8553 -1.9668 4.0986 20 6 11.1107 -1.6880 4.5030 21 1 11.5761 -2.2873 5.2716 22 6 11.8043 -0.6319 3.9325 23 7 11.2374 0.0980 2.9959 24 14 13.5436 -0.2450 4.4933 25 1 13.9482 -1.2064 5.5504 26 1 14.4721 -0.3574 3.3397 27 1 13.5931 1.1364 5.0359 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0053 0.9859 2.4626 36 1 0.4822 0.0663 2.4133 37 1 1.8862 -0.5840 3.2931 38 1 3.9335 0.1660 1.3160 39 1 3.7973 -1.2257 0.2145 40 1 3.4845 -2.7334 2.1582 41 1 3.6208 -1.3417 3.2596 42 1 5.9106 -1.3954 1.6078 43 1 7.8747 -2.3340 2.4572 44 1 6.4562 -4.9393 4.3532 45 1 7.6168 -6.2242 6.1013 46 1 10.8874 -3.4851 5.9668 47 1 11.7228 0.8367 2.5965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135294722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = -65.294561 kcal Electronic energy + Delta-G solvation = -29019.331329 eV Core-core repulsion = 24731.962949 eV Total energy + Delta-G solvation = -4287.368381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -48.22432 -40.23490 -39.12067 -38.59287 -36.44429 -34.92018 -34.00238 -32.40632 -32.18262 -29.48081 -29.05389 -28.01475 -27.36359 -26.11208 -25.48051 -22.78890 -22.04812 -21.52243 -20.56340 -19.86190 -18.34257 -18.20524 -17.60889 -16.93225 -16.42344 -15.90904 -15.39056 -15.22743 -15.15364 -14.94321 -14.82343 -14.63716 -14.27655 -14.17295 -13.94304 -13.60885 -13.47379 -13.44086 -13.28616 -13.08709 -12.40332 -12.35799 -12.28338 -12.14520 -12.00181 -11.65756 -11.57797 -11.52678 -11.35433 -11.19012 -11.03421 -10.94867 -10.71592 -10.52553 -9.86547 -9.74757 -9.43039 -8.96803 -8.93648 -8.60829 -7.84952 -7.08048 -6.60683 -4.18225 1.88013 2.14968 2.81598 3.05181 3.07780 3.12990 3.48855 3.70816 3.85182 4.37702 4.49497 4.55090 4.65737 4.75839 4.88129 4.88792 4.96281 4.97259 5.08432 5.14210 5.26040 5.28033 5.31645 5.40221 5.51388 5.60408 5.61263 5.67078 5.76429 5.82618 5.84494 5.90531 5.96642 6.06208 6.23444 6.50560 6.62679 6.71612 6.76943 6.78003 6.93362 6.96093 7.09775 7.17004 7.32446 7.69001 7.84111 8.28766 8.85025 8.88743 9.47933 10.56562 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.002578 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.877383 B =10860.161185 C =13171.239620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.076 3.924 3 C -0.190 4.190 4 N -0.531 5.531 5 C 0.011 3.989 6 C 0.042 3.958 7 C 0.144 3.856 8 N -0.747 5.747 9 C 0.706 3.294 10 O -0.585 6.585 11 N -0.665 5.665 12 C 0.078 3.922 13 C -0.050 4.050 14 C -0.228 4.228 15 C 0.127 3.873 16 F -0.152 7.152 17 C -0.258 4.258 18 C 0.157 3.843 19 O -0.169 6.169 20 C -0.391 4.391 21 H 0.095 0.905 22 C 0.042 3.958 23 N -0.861 5.861 24 Si 0.942 3.058 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.397 0.603 43 H 0.411 0.589 44 H 0.143 0.857 45 H 0.123 0.877 46 H 0.143 0.857 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.302 0.819 -6.758 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.248 4.248 4 N -0.255 5.255 5 C -0.137 4.137 6 C -0.087 4.087 7 C 0.019 3.981 8 N -0.403 5.403 9 C 0.406 3.594 10 O -0.463 6.463 11 N -0.311 5.311 12 C -0.017 4.017 13 C -0.071 4.071 14 C -0.248 4.248 15 C 0.107 3.893 16 F -0.131 7.131 17 C -0.279 4.279 18 C 0.101 3.899 19 O -0.072 6.072 20 C -0.467 4.467 21 H 0.112 0.888 22 C -0.162 4.162 23 N -0.495 5.495 24 Si 0.766 3.234 25 H -0.189 1.189 26 H -0.200 1.200 27 H -0.201 1.201 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.231 0.769 43 H 0.246 0.754 44 H 0.161 0.839 45 H 0.141 0.859 46 H 0.160 0.840 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.128 0.197 -6.290 17.312 hybrid contribution 1.948 1.501 -0.129 2.463 sum -14.180 1.698 -6.420 15.658 Atomic orbital electron populations 1.21877 0.94156 1.02553 1.01712 1.21730 0.95889 0.92441 0.93203 1.22506 1.01716 0.98102 1.02515 1.62119 1.09796 1.51064 1.02484 1.22579 1.01249 0.97206 0.92672 1.22273 0.88094 0.98737 0.99565 1.21055 0.78512 1.00190 0.98298 1.44951 1.07615 1.51861 1.35913 1.15821 0.81801 0.80132 0.81616 1.90875 1.65154 1.50518 1.39742 1.42177 1.04816 1.55032 1.29123 1.16652 0.92760 0.95043 0.97216 1.20686 0.99462 0.91370 0.95560 1.20495 0.95684 1.04232 1.04379 1.17462 0.91780 0.91539 0.88476 1.91409 1.82274 1.77877 1.61507 1.20841 1.04174 0.98767 1.04116 1.18825 0.91904 0.87470 0.91722 1.83932 1.29328 1.34037 1.59912 1.21403 0.87720 1.15765 1.21833 0.88787 1.25273 0.99969 0.95296 0.95691 1.70019 1.37510 1.17887 1.24120 0.85622 0.80110 0.78856 0.78774 1.18945 1.20039 1.20088 0.92444 0.92259 0.91720 0.89866 0.92197 0.92342 0.91996 0.95050 0.90939 0.90805 0.93736 0.90103 0.90786 0.91650 0.76919 0.75352 0.83908 0.85945 0.83987 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.00 37.15 0.33 -0.59 16 2 C 0.08 0.56 2.95 -67.72 -0.20 0.36 16 3 C -0.19 -1.33 8.50 37.16 0.32 -1.01 16 4 N -0.53 -4.65 4.75 -234.90 -1.12 -5.76 16 5 C 0.01 0.09 8.51 60.06 0.51 0.60 16 6 C 0.04 0.38 4.51 -3.82 -0.02 0.36 16 7 C 0.14 1.69 5.60 -4.04 -0.02 1.66 16 8 N -0.75 -9.89 5.56 -65.22 -0.36 -10.26 16 9 C 0.71 12.41 8.41 -86.92 -0.73 11.68 16 10 O -0.58 -11.91 13.76 5.29 0.07 -11.84 16 11 N -0.66 -12.33 5.20 -14.07 -0.07 -12.41 16 12 C 0.08 1.64 6.33 -83.44 -0.53 1.11 16 13 C -0.05 -0.98 8.70 -39.43 -0.34 -1.33 16 14 C -0.23 -4.29 10.02 -39.48 -0.40 -4.69 16 15 C 0.13 2.57 7.29 -39.43 -0.29 2.29 16 16 F -0.15 -2.94 17.26 2.25 0.04 -2.90 16 17 C -0.26 -5.68 9.14 -39.36 -0.36 -6.04 16 18 C 0.16 3.64 6.66 -38.94 -0.26 3.38 16 19 O -0.17 -4.41 9.32 0.04 0.00 -4.41 16 20 C -0.39 -10.30 9.49 30.88 0.29 -10.01 16 21 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.86 -23.34 13.67 55.48 0.76 -22.59 16 24 Si 0.94 19.68 29.55 -169.99 -5.02 14.65 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 28 H 0.06 0.36 6.34 -51.92 -0.33 0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.60 8.03 -51.92 -0.42 0.18 16 32 H 0.06 0.43 6.47 -51.93 -0.34 0.10 16 33 H 0.06 0.44 6.75 -51.93 -0.35 0.09 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.26 6.51 -51.93 -0.34 -0.08 16 36 H 0.07 0.53 6.13 -51.93 -0.32 0.21 16 37 H 0.07 0.67 6.47 -51.93 -0.34 0.33 16 38 H 0.04 0.41 6.94 -51.93 -0.36 0.05 16 39 H 0.08 0.67 8.00 -51.93 -0.42 0.26 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 42 H 0.40 4.38 8.49 -40.82 -0.35 4.03 16 43 H 0.41 7.20 8.59 -40.82 -0.35 6.85 16 44 H 0.14 2.74 6.19 -52.49 -0.32 2.41 16 45 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 46 H 0.14 3.12 5.64 -52.49 -0.30 2.82 16 47 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -30.11 382.24 -8.11 -38.22 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -6.38 Total: 12.75 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.79 Total: -1.22 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.79 Total: -51.01 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.07 Total: -16.25 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.04 Total: -2.90 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.11 -8.11 -38.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135294722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.076 kcal (2) G-P(sol) polarization free energy of solvation -30.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds