Wall clock time and date at job start Sat Apr 11 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 N 1.46895 * 109.47345 * 120.00561 * 2 1 3 5 5 C 1.46898 * 111.00125 * 298.94971 * 4 2 1 6 6 C 1.46904 * 110.99923 * 174.99483 * 4 2 1 7 7 C 1.52994 * 109.47151 * 189.99699 * 6 4 2 8 8 N 1.46501 * 109.47332 * 180.02562 * 7 6 4 9 9 C 1.34773 * 120.00110 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00361 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99901 * 180.27787 * 9 8 7 12 12 C 1.40138 * 120.00081 * 175.35645 * 11 9 8 13 13 C 1.38688 * 120.07459 * 34.59721 * 12 11 9 14 14 C 1.38200 * 120.02195 * 179.72486 * 13 12 11 15 15 C 1.38549 * 120.17243 * 0.55031 * 14 13 12 16 16 F 1.35101 * 119.92670 * 179.74446 * 15 14 13 17 17 C 1.38350 * 120.14875 * 359.72481 * 15 14 13 18 18 C 1.38734 * 119.97931 * 0.02562 * 17 15 14 19 19 O 1.35777 * 120.08833 * 180.02562 * 18 17 15 20 20 C 1.34803 * 116.99839 * 5.43667 * 19 18 17 21 21 H 1.08003 * 120.00175 * 354.94414 * 20 19 18 22 22 C 1.38635 * 120.00104 * 174.95430 * 20 19 18 23 23 N 1.31578 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00339 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47015 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.46901 * 119.99536 * 24 22 20 27 27 H 1.48498 * 109.47335 * 239.99890 * 24 22 20 28 28 H 1.09010 * 109.46868 * 299.99301 * 1 2 3 29 29 H 1.09004 * 109.47649 * 59.99571 * 1 2 3 30 30 H 1.09006 * 109.47299 * 179.97438 * 1 2 3 31 31 H 1.09010 * 109.46868 * 240.00699 * 2 1 3 32 32 H 1.09005 * 109.47010 * 60.00471 * 3 2 1 33 33 H 1.08997 * 109.47604 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47541 * 300.01037 * 3 2 1 35 35 H 1.09000 * 109.46926 * 296.05145 * 5 4 2 36 36 H 1.08998 * 109.46941 * 56.04450 * 5 4 2 37 37 H 1.08994 * 109.47414 * 176.04736 * 5 4 2 38 38 H 1.09001 * 109.46546 * 70.00177 * 6 4 2 39 39 H 1.09002 * 109.47595 * 310.00281 * 6 4 2 40 40 H 1.09007 * 109.47267 * 60.00399 * 7 6 4 41 41 H 1.09001 * 109.47776 * 300.00416 * 7 6 4 42 42 H 0.97005 * 119.99663 * 0.02562 * 8 7 6 43 43 H 0.96998 * 120.00000 * 355.35605 * 11 9 8 44 44 H 1.08002 * 119.98910 * 359.97438 * 13 12 11 45 45 H 1.07996 * 119.91679 * 180.24909 * 14 13 12 46 46 H 1.07999 * 120.00662 * 180.02562 * 17 15 14 47 47 H 0.96996 * 120.00069 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 1.5693 -0.0123 2.4209 6 6 3.4832 -0.8166 1.1749 7 6 3.9347 -1.7507 2.2993 8 7 5.3944 -1.8740 2.2753 9 6 6.0200 -2.6513 3.1812 10 8 5.3730 -3.2508 4.0182 11 7 7.3632 -2.7603 3.1626 12 6 8.0210 -3.4894 4.1624 13 6 7.4270 -4.6202 4.7028 14 6 8.0791 -5.3417 5.6846 15 6 9.3218 -4.9322 6.1403 16 9 9.9526 -5.6383 7.1040 17 6 9.9184 -3.8020 5.6103 18 6 9.2716 -3.0760 4.6207 19 8 9.8553 -1.9668 4.0986 20 6 11.1107 -1.6880 4.5030 21 1 11.5761 -2.2873 5.2716 22 6 11.8043 -0.6319 3.9325 23 7 11.2374 0.0980 2.9959 24 14 13.5436 -0.2450 4.4933 25 1 13.9482 -1.2064 5.5504 26 1 14.4721 -0.3574 3.3397 27 1 13.5931 1.1364 5.0359 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 2.0053 0.9859 2.4626 36 1 0.4822 0.0663 2.4133 37 1 1.8862 -0.5840 3.2931 38 1 3.9335 0.1660 1.3160 39 1 3.7973 -1.2257 0.2145 40 1 3.4845 -2.7334 2.1582 41 1 3.6208 -1.3417 3.2596 42 1 5.9106 -1.3954 1.6078 43 1 7.8747 -2.3340 2.4572 44 1 6.4562 -4.9393 4.3532 45 1 7.6168 -6.2242 6.1013 46 1 10.8874 -3.4851 5.9668 47 1 11.7228 0.8367 2.5965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135294722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:14 Heat of formation + Delta-G solvation = -85.564676 kcal Electronic energy + Delta-G solvation = -29020.210308 eV Core-core repulsion = 24731.962949 eV Total energy + Delta-G solvation = -4288.247359 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.81654 -41.73799 -40.46705 -39.60191 -38.11266 -36.08265 -35.54519 -34.30193 -32.97805 -31.09642 -30.30096 -29.12865 -28.04000 -27.39063 -26.89504 -24.23055 -23.44583 -22.78662 -21.96766 -20.56003 -20.13901 -19.68816 -19.17853 -18.34517 -17.36382 -17.16081 -16.97598 -16.71821 -16.57493 -16.08899 -15.96801 -15.93322 -15.61429 -15.45634 -15.24322 -15.07976 -14.95572 -14.83715 -14.13684 -14.03050 -13.95122 -13.73316 -13.41594 -13.06171 -12.99832 -12.92696 -12.72958 -12.58108 -12.34635 -12.27352 -12.12950 -12.12666 -11.92725 -11.64609 -11.61280 -11.34664 -11.01937 -10.82811 -10.15143 -9.53449 -9.28874 -8.73882 -8.50828 -6.16601 0.22343 0.47682 1.37533 1.42925 1.52930 1.54872 2.04740 2.14386 2.69083 2.86573 3.06090 3.17951 3.34619 3.46648 3.81182 3.95958 3.99823 4.04532 4.17609 4.18639 4.37177 4.38312 4.43288 4.51505 4.59063 4.61734 4.76031 4.78301 4.90225 4.94280 4.96167 4.99562 5.03477 5.07365 5.08769 5.23537 5.30534 5.32752 5.34414 5.40307 5.43976 5.57878 5.90533 5.94857 6.05490 6.08974 6.13158 6.93746 6.94482 7.45760 7.63908 8.69743 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010846 B = 0.002578 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.877383 B =10860.161185 C =13171.239620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 C -0.186 4.186 4 N -0.539 5.539 5 C 0.012 3.988 6 C 0.052 3.948 7 C 0.148 3.852 8 N -0.729 5.729 9 C 0.704 3.296 10 O -0.612 6.612 11 N -0.665 5.665 12 C 0.079 3.921 13 C -0.051 4.051 14 C -0.203 4.203 15 C 0.122 3.878 16 F -0.145 7.145 17 C -0.264 4.264 18 C 0.131 3.869 19 O -0.202 6.202 20 C -0.415 4.415 21 H 0.099 0.901 22 C -0.009 4.009 23 N -0.905 5.905 24 Si 1.011 2.989 25 H -0.257 1.257 26 H -0.267 1.267 27 H -0.270 1.270 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.031 0.969 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.046 0.954 39 H 0.092 0.908 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.410 0.590 43 H 0.414 0.586 44 H 0.153 0.847 45 H 0.158 0.842 46 H 0.136 0.864 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 0.324 -6.933 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.245 4.245 4 N -0.263 5.263 5 C -0.136 4.136 6 C -0.077 4.077 7 C 0.024 3.976 8 N -0.386 5.386 9 C 0.404 3.596 10 O -0.493 6.493 11 N -0.312 5.312 12 C -0.017 4.017 13 C -0.072 4.072 14 C -0.223 4.223 15 C 0.102 3.898 16 F -0.123 7.123 17 C -0.284 4.284 18 C 0.077 3.923 19 O -0.107 6.107 20 C -0.491 4.491 21 H 0.116 0.884 22 C -0.208 4.208 23 N -0.541 5.541 24 Si 0.831 3.169 25 H -0.181 1.181 26 H -0.192 1.192 27 H -0.195 1.195 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.246 0.754 43 H 0.250 0.750 44 H 0.170 0.830 45 H 0.175 0.825 46 H 0.154 0.846 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.867 -0.305 -6.488 18.074 hybrid contribution 1.961 1.494 -0.045 2.465 sum -14.906 1.189 -6.532 16.318 Atomic orbital electron populations 1.21853 0.93323 1.02413 1.02371 1.21803 0.96540 0.92489 0.92537 1.22467 1.01222 0.97912 1.02866 1.62124 1.09318 1.51708 1.03180 1.22569 1.01941 0.96912 0.92193 1.22158 0.88605 0.98071 0.98861 1.21105 0.77158 1.00423 0.98939 1.44871 1.08383 1.50431 1.34890 1.15944 0.81278 0.80366 0.81981 1.90843 1.65521 1.51847 1.41083 1.42184 1.05282 1.55006 1.28777 1.16902 0.92186 0.95364 0.97250 1.20871 0.99735 0.90893 0.95668 1.20881 0.94509 1.04314 1.02593 1.17453 0.92302 0.91227 0.88828 1.91427 1.82244 1.77527 1.61142 1.20917 1.04108 0.99420 1.03994 1.19160 0.92936 0.87664 0.92530 1.83910 1.29623 1.35742 1.61399 1.21785 0.88334 1.16480 1.22497 0.88388 1.26355 1.03970 0.94831 0.95656 1.70121 1.39383 1.18862 1.25770 0.84625 0.74893 0.78748 0.78637 1.18087 1.19181 1.19518 0.92402 0.91011 0.92229 0.89537 0.92525 0.93023 0.90968 0.95036 0.89868 0.91900 0.93581 0.88922 0.91505 0.92782 0.75424 0.74987 0.82965 0.82467 0.84631 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.00 71.98 0.65 -0.92 16 2 C 0.07 0.97 2.95 44.91 0.13 1.10 16 3 C -0.19 -2.32 8.50 71.98 0.61 -1.71 16 4 N -0.54 -8.81 4.75 -897.08 -4.26 -13.07 16 5 C 0.01 0.19 8.51 127.69 1.09 1.27 16 6 C 0.05 0.88 4.51 86.30 0.39 1.27 16 7 C 0.15 3.37 5.60 86.38 0.48 3.85 16 8 N -0.73 -18.89 5.56 -478.53 -2.66 -21.55 16 9 C 0.70 24.53 8.41 179.05 1.51 26.03 16 10 O -0.61 -24.62 13.76 -4.00 -0.05 -24.68 16 11 N -0.67 -24.81 5.20 -316.70 -1.65 -26.45 16 12 C 0.08 3.30 6.33 38.22 0.24 3.54 16 13 C -0.05 -1.93 8.70 22.37 0.19 -1.73 16 14 C -0.20 -7.15 10.02 22.33 0.22 -6.93 16 15 C 0.12 4.75 7.29 22.37 0.16 4.91 16 16 F -0.14 -5.31 17.26 44.97 0.78 -4.54 16 17 C -0.26 -11.64 9.14 22.42 0.20 -11.43 16 18 C 0.13 6.17 6.66 22.68 0.15 6.33 16 19 O -0.20 -10.88 9.32 -22.76 -0.21 -11.09 16 20 C -0.42 -22.47 9.49 67.91 0.64 -21.83 16 21 H 0.10 5.01 5.20 -2.91 -0.02 5.00 16 22 C -0.01 -0.45 5.49 84.83 0.47 0.02 16 23 N -0.90 -50.32 13.67 21.61 0.30 -50.03 16 24 Si 1.01 40.57 29.55 68.60 2.03 42.60 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 27 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 28 H 0.06 0.63 6.34 -2.38 -0.02 0.62 16 29 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 31 H 0.09 1.09 8.03 -2.38 -0.02 1.07 16 32 H 0.06 0.74 6.47 -2.38 -0.02 0.73 16 33 H 0.05 0.71 6.75 -2.39 -0.02 0.70 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.03 0.50 6.51 -2.39 -0.02 0.48 16 36 H 0.08 1.12 6.13 -2.39 -0.01 1.11 16 37 H 0.06 1.13 6.47 -2.39 -0.02 1.11 16 38 H 0.05 0.79 6.94 -2.39 -0.02 0.77 16 39 H 0.09 1.38 8.00 -2.39 -0.02 1.36 16 40 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.05 1.38 6.55 -2.39 -0.02 1.37 16 42 H 0.41 8.70 8.49 -92.70 -0.79 7.91 16 43 H 0.41 14.79 8.59 -92.71 -0.80 14.00 16 44 H 0.15 5.56 6.19 -2.91 -0.02 5.54 16 45 H 0.16 4.47 8.06 -2.91 -0.02 4.44 16 46 H 0.14 6.07 5.64 -2.91 -0.02 6.06 16 47 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -65.20 382.24 0.86 -64.33 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: -0.55 Total: 40.71 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 7.15 Total: 3.77 kcal Atomic # 7 Polarization: -102.83 SS G_CDS: -8.27 Total: -111.10 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.27 Total: -35.77 kcal Atomic # 9 Polarization: -5.31 SS G_CDS: 0.78 Total: -4.54 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -65.20 0.86 -64.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135294722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.234 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds