Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81399 * 103.00131 * 2 1 4 4 C 1.53008 * 109.46988 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46731 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00297 * 269.99892 * 5 4 3 7 7 C 1.34784 * 119.99741 * 90.00177 * 5 4 3 8 8 O 1.21281 * 120.00093 * 359.97438 * 7 5 4 9 9 C 1.50696 * 119.99865 * 179.97438 * 7 5 4 10 10 C 1.53000 * 109.47110 * 179.97438 * 9 7 5 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.39862 * 126.04094 * 269.68901 * 11 10 9 13 13 C 1.50702 * 125.90180 * 0.02562 * 12 11 10 14 14 N 1.30842 * 108.19992 * 179.81747 * 12 11 10 15 15 N 1.40084 * 108.20663 * 0.44091 * 14 12 11 16 16 C 1.46495 * 126.04013 * 179.73793 * 15 14 12 17 17 C 1.50699 * 109.47131 * 269.98016 * 16 15 14 18 18 H 1.08002 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47367 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47238 * 119.99996 * 21 19 17 24 24 H 1.48507 * 109.47262 * 239.99788 * 21 19 17 25 25 C 1.34950 * 107.92381 * 359.71898 * 15 14 12 26 26 C 1.50694 * 126.12576 * 179.97438 * 25 15 14 27 27 H 1.09001 * 109.46659 * 300.00361 * 1 2 3 28 28 H 1.08991 * 109.46877 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.47142 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47022 * 60.00052 * 3 2 1 31 31 H 1.09002 * 109.46834 * 299.99602 * 3 2 1 32 32 H 1.09000 * 109.47043 * 59.99649 * 4 3 2 33 33 H 1.09002 * 109.46920 * 299.99441 * 4 3 2 34 34 H 1.09003 * 109.47205 * 270.00216 * 6 5 4 35 35 H 1.09000 * 109.47085 * 30.00190 * 6 5 4 36 36 H 1.08999 * 109.47554 * 150.00165 * 6 5 4 37 37 H 1.09000 * 109.47543 * 59.99570 * 9 7 5 38 38 H 1.09008 * 109.47338 * 300.00084 * 9 7 5 39 39 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 40 40 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 41 41 H 1.08998 * 109.47393 * 89.99256 * 13 12 11 42 42 H 1.09001 * 109.46747 * 209.99996 * 13 12 11 43 43 H 1.08998 * 109.46776 * 329.99757 * 13 12 11 44 44 H 1.09001 * 109.47188 * 29.97306 * 16 15 14 45 45 H 1.08997 * 109.47530 * 149.97532 * 16 15 14 46 46 H 0.96999 * 120.00262 * 179.97438 * 20 19 17 47 47 H 1.09000 * 109.47170 * 270.02464 * 26 25 15 48 48 H 1.09004 * 109.47112 * 30.02444 * 26 25 15 49 49 H 1.09003 * 109.46820 * 150.02019 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 7 4.0720 3.3673 -0.0013 6 6 4.2363 4.0806 -1.2702 7 6 4.2240 4.0243 1.1657 8 8 4.0876 3.4338 2.2163 9 6 4.5635 5.4925 1.1651 10 6 4.6781 5.9900 2.6074 11 6 5.0183 7.4582 2.6068 12 6 6.3057 8.0046 2.6132 13 6 7.5961 7.2261 2.6213 14 7 6.1964 9.3084 2.6064 15 7 4.8337 9.6334 2.6057 16 6 4.2701 10.9856 2.6043 17 6 4.0759 11.4502 4.0247 18 1 4.3451 10.8028 4.8462 19 6 3.5547 12.7019 4.2755 20 7 3.2275 13.4903 3.2751 21 14 3.3134 13.2775 6.0360 22 1 3.7555 12.2114 6.9705 23 1 4.1154 14.5052 6.2698 24 1 1.8766 13.5734 6.2676 25 6 4.1319 8.4807 2.6060 26 6 2.6302 8.3549 2.6060 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8032 2.2371 0.8900 31 1 1.8032 2.2371 -0.8900 32 1 4.1610 1.4703 -0.8908 33 1 4.1617 1.4702 0.8892 34 1 5.2784 4.0263 -1.5852 35 1 3.6028 3.6220 -2.0295 36 1 3.9499 5.1242 -1.1401 37 1 3.7783 6.0469 0.6512 38 1 5.5125 5.6458 0.6510 39 1 5.4633 5.4358 3.1217 40 1 3.7290 5.8369 3.1211 41 1 7.9128 7.0370 1.5957 42 1 8.3641 7.8012 3.1386 43 1 7.4446 6.2771 3.1356 44 1 4.9522 11.6630 2.0906 45 1 3.3092 10.9782 2.0899 46 1 2.8604 14.3707 3.4514 47 1 2.2681 8.3253 3.6337 48 1 2.1939 9.2111 2.0915 49 1 2.3425 7.4373 2.0928 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152266672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = 16.221148 kcal Electronic energy + Delta-G solvation = -26926.869272 eV Core-core repulsion = 23209.248853 eV Total energy + Delta-G solvation = -3717.620418 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66619 -40.00103 -36.16248 -34.44554 -33.48797 -32.49959 -31.85033 -30.09930 -29.34905 -28.97039 -27.11148 -26.75592 -25.88831 -24.50822 -22.98098 -21.99596 -19.26870 -18.82265 -18.66085 -17.22850 -16.94588 -16.71244 -16.26804 -15.84348 -15.47900 -14.96888 -14.55530 -14.40502 -14.27311 -14.04058 -13.76684 -13.64017 -13.27309 -13.17447 -12.99970 -12.92690 -12.81834 -12.53836 -12.51679 -12.40737 -12.19465 -12.09547 -11.80129 -11.68125 -11.56561 -11.34925 -11.27344 -10.95859 -10.83465 -10.72786 -10.47414 -10.27671 -9.88664 -9.72174 -9.61192 -9.03345 -8.66920 -8.19306 -8.08867 -7.48706 -6.28330 -4.35435 1.17135 2.14557 2.52016 2.72476 2.86150 3.18588 3.26666 3.32420 3.37727 3.60341 4.28213 4.33515 4.48461 4.63273 4.71302 4.73665 4.77678 4.99021 5.04927 5.06091 5.20284 5.22572 5.28132 5.29719 5.31974 5.36289 5.41598 5.54441 5.63797 5.73794 5.80875 5.93667 5.95941 6.00565 6.04438 6.15292 6.23073 6.35181 6.43967 6.53814 6.84169 7.01240 7.09043 7.10417 7.50420 7.64987 7.86658 8.02238 8.04680 8.65652 8.74369 9.31129 10.79300 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016594 B = 0.002094 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.962135 B =13367.812831 C =14227.449640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.257 6.257 3 C -0.102 4.102 4 C 0.133 3.867 5 N -0.621 5.621 6 C 0.076 3.924 7 C 0.513 3.487 8 O -0.533 6.533 9 C -0.131 4.131 10 C -0.011 4.011 11 C -0.269 4.269 12 C 0.051 3.949 13 C -0.064 4.064 14 N -0.297 5.297 15 N -0.325 5.325 16 C 0.257 3.743 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.906 3.094 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.281 1.281 25 C 0.093 3.907 26 C -0.086 4.086 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.267 0.733 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 -23.153 -11.534 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.033 6.033 3 C -0.252 4.252 4 C 0.009 3.991 5 N -0.357 5.357 6 C -0.067 4.067 7 C 0.303 3.697 8 O -0.409 6.409 9 C -0.171 4.171 10 C -0.050 4.050 11 C -0.281 4.281 12 C -0.114 4.114 13 C -0.123 4.123 14 N -0.121 5.121 15 N -0.104 5.104 16 C 0.139 3.861 17 C -0.573 4.573 18 H 0.083 0.917 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.038 4.038 26 C -0.144 4.144 27 H 0.097 0.903 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.610 -22.835 -11.023 25.408 hybrid contribution -1.602 0.947 0.726 1.997 sum -3.212 -21.889 -10.298 24.402 Atomic orbital electron populations 1.23379 0.93706 1.06607 1.05101 1.86799 1.07851 1.10550 1.98103 1.23829 1.01219 0.94650 1.05453 1.21040 0.91777 0.81903 1.04407 1.47985 1.71139 1.09611 1.06937 1.21861 1.01922 0.97896 0.85044 1.21170 0.75661 0.90112 0.82785 1.90704 1.49946 1.69342 1.30858 1.21786 1.03584 0.90367 1.01362 1.19406 1.02137 0.90376 0.93101 1.19339 0.91794 0.94606 1.22336 1.21946 0.95225 0.91655 1.02541 1.20026 0.92258 0.98232 1.01799 1.77279 0.96184 1.13948 1.24650 1.49240 1.02613 1.07350 1.51208 1.19655 0.94092 0.73428 0.98943 1.21346 1.43379 1.01172 0.91375 0.91747 1.24933 0.94789 0.95981 0.98147 1.69925 1.42576 1.09556 1.30948 0.86303 0.77901 0.78804 0.83710 1.19553 1.20619 1.20645 1.20767 0.94995 0.86789 1.01290 1.20343 0.88572 1.02286 1.03182 0.90305 0.90464 0.87934 0.89471 0.90023 0.89734 0.88814 0.92161 0.91142 0.90339 0.89068 0.88891 0.91237 0.91461 0.91614 0.91567 0.91232 0.93066 0.93122 0.92316 0.90448 0.90944 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.76 101.05 1.09 0.40 16 2 S -0.26 -2.15 22.38 -107.50 -2.41 -4.55 16 3 C -0.10 -0.82 6.26 37.16 0.23 -0.59 16 4 C 0.13 1.11 5.41 -4.04 -0.02 1.09 16 5 N -0.62 -5.47 2.87 -181.57 -0.52 -5.99 16 6 C 0.08 0.44 10.24 59.84 0.61 1.05 16 7 C 0.51 6.01 7.67 -10.98 -0.08 5.92 16 8 O -0.53 -8.16 15.56 5.56 0.09 -8.07 16 9 C -0.13 -1.46 4.23 -27.89 -0.12 -1.58 16 10 C -0.01 -0.16 4.41 -27.88 -0.12 -0.28 16 11 C -0.27 -4.73 5.35 -105.05 -0.56 -5.29 16 12 C 0.05 0.95 7.22 -82.41 -0.59 0.36 16 13 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 14 N -0.30 -6.77 12.58 33.67 0.42 -6.35 16 15 N -0.32 -7.50 3.60 -58.32 -0.21 -7.71 16 16 C 0.26 6.54 6.00 -5.20 -0.03 6.50 16 17 C -0.53 -14.74 9.39 -34.44 -0.32 -15.06 16 18 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -25.03 13.29 55.43 0.74 -24.30 16 21 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.09 1.82 6.93 -82.26 -0.57 1.25 16 26 C -0.09 -1.38 9.72 36.00 0.35 -1.03 16 27 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 33 H 0.09 0.98 7.42 -51.93 -0.39 0.59 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.29 8.07 -51.93 -0.42 -0.12 16 36 H 0.08 0.43 6.44 -51.93 -0.33 0.10 16 37 H 0.09 0.93 7.40 -51.93 -0.38 0.55 16 38 H 0.09 0.95 8.11 -51.92 -0.42 0.52 16 39 H 0.07 1.00 7.20 -51.93 -0.37 0.63 16 40 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.86 7.25 -51.93 -0.38 0.49 16 44 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.05 1.27 7.05 -51.93 -0.37 0.91 16 46 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.07 1.20 7.08 -51.93 -0.37 0.83 16 49 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 LS Contribution 417.60 15.07 6.29 6.29 Total: -1.00 -32.77 417.60 -8.92 -41.69 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -8.43 Total: -1.05 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 0.13 Total: -6.13 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.43 Total: -44.35 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.41 Total: -4.55 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.77 -8.92 -41.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152266672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.907 kcal (2) G-P(sol) polarization free energy of solvation -32.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds