Wall clock time and date at job start Sat Apr 11 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00198 * 2 1 4 4 H 1.48506 * 109.46975 * 90.00155 * 3 2 1 5 5 H 1.48494 * 109.47024 * 210.00232 * 3 2 1 6 6 H 1.48497 * 109.47098 * 330.00417 * 3 2 1 7 7 C 1.37874 * 119.99470 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00337 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99819 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47034 * 174.96951 * 9 7 2 11 11 C 1.46895 * 110.99967 * 66.36849 * 10 9 7 12 12 C 1.50703 * 109.47476 * 76.78003 * 11 10 9 13 13 C 1.34515 * 125.79183 * 89.70942 * 12 11 10 14 14 C 1.41380 * 106.83842 * 179.89318 * 13 12 11 15 15 C 1.34506 * 106.84481 * 0.37546 * 14 13 12 16 16 O 1.34300 * 125.78566 * 270.02917 * 12 11 10 17 17 C 1.46893 * 110.99980 * 302.40808 * 10 9 7 18 18 C 1.53001 * 109.47619 * 281.85281 * 17 10 9 19 19 H 1.09000 * 109.46763 * 305.47461 * 18 17 10 20 20 O 1.42898 * 109.46975 * 65.47405 * 18 17 10 21 21 C 1.53006 * 109.47046 * 185.47652 * 18 17 10 22 22 O 1.42898 * 109.46748 * 175.00075 * 21 18 17 23 23 C 1.42900 * 113.99995 * 179.97438 * 22 21 18 24 24 C 1.52994 * 109.47433 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.86840 * 54.29647 * 24 23 22 26 26 C 1.54096 * 109.88221 * 175.30930 * 24 23 22 27 27 C 1.54807 * 104.19280 * 121.45442 * 26 24 23 28 28 C 1.54996 * 102.09152 * 20.88053 * 27 26 24 29 29 O 1.43745 * 109.88110 * 293.29429 * 24 23 22 30 30 H 0.97001 * 119.99854 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46904 * 294.96760 * 9 7 2 32 32 H 1.08999 * 109.47234 * 54.96675 * 9 7 2 33 33 H 1.09007 * 109.46873 * 196.77624 * 11 10 9 34 34 H 1.08994 * 109.46938 * 316.77370 * 11 10 9 35 35 H 1.07998 * 126.57907 * 0.03272 * 13 12 11 36 36 H 1.08005 * 126.57530 * 180.16336 * 14 13 12 37 37 H 1.08004 * 125.79321 * 179.75576 * 15 14 13 38 38 H 1.09004 * 109.47348 * 41.85650 * 17 10 9 39 39 H 1.09000 * 109.47047 * 161.85259 * 17 10 9 40 40 H 0.96705 * 113.99627 * 60.00553 * 20 18 17 41 41 H 1.08999 * 109.46692 * 295.00113 * 21 18 17 42 42 H 1.08993 * 109.47246 * 55.00015 * 21 18 17 43 43 H 1.08996 * 109.47238 * 300.00066 * 23 22 21 44 44 H 1.09004 * 109.47006 * 59.99780 * 23 22 21 45 45 H 1.09006 * 110.49068 * 240.13404 * 26 24 23 46 46 H 1.08999 * 110.48966 * 2.77273 * 26 24 23 47 47 H 1.09000 * 110.90711 * 139.07920 * 27 26 24 48 48 H 1.09001 * 110.90690 * 262.65300 * 27 26 24 49 49 H 1.09001 * 110.61537 * 81.47472 * 28 27 26 50 50 H 1.08996 * 110.62333 * 204.31579 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5466 1.4400 -0.7001 6 1 1.4466 2.6526 -0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 4.0010 -2.5739 0.1198 11 6 3.6577 -3.3607 -1.0722 12 6 4.5896 -2.9976 -2.1995 13 6 5.7687 -3.5874 -2.4665 14 6 6.3029 -2.9388 -3.6035 15 6 5.4224 -1.9859 -3.9583 16 8 4.3866 -2.0261 -3.1042 17 6 3.4840 -3.2111 1.3382 18 6 4.2826 -2.7218 2.5481 19 1 5.3449 -2.8951 2.3763 20 8 4.0525 -1.3241 2.7370 21 6 3.8364 -3.4856 3.7965 22 8 4.6606 -3.1129 4.9027 23 6 4.3256 -3.7725 6.1253 24 6 5.2677 -3.3002 7.2344 25 1 5.2462 -2.2124 7.3005 26 6 4.8415 -3.9156 8.5814 27 6 6.0891 -4.7027 9.0508 28 6 7.2235 -4.0274 8.2388 29 8 6.6065 -3.7469 6.9618 30 1 -0.4850 0.8401 0.0004 31 1 3.8744 -0.7602 -0.9328 32 1 3.8751 -0.6045 0.8403 33 1 3.7562 -4.4228 -0.8472 34 1 2.6305 -3.1453 -1.3662 35 1 6.2195 -4.4019 -1.9189 36 1 7.2401 -3.1630 -4.0913 37 1 5.5302 -1.3040 -4.7888 38 1 2.4334 -2.9504 1.4668 39 1 3.5818 -4.2932 1.2519 40 1 3.1262 -1.0960 2.8954 41 1 2.7975 -3.2424 4.0192 42 1 3.9288 -4.5570 3.6192 43 1 3.2969 -3.5349 6.3963 44 1 4.4278 -4.8501 5.9967 45 1 4.5931 -3.1320 9.2973 46 1 3.9955 -4.5888 8.4427 47 1 6.2487 -4.5761 10.1216 48 1 6.0020 -5.7586 8.7944 49 1 7.5420 -3.1028 8.7202 50 1 8.0673 -4.7070 8.1196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249525703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:51 Heat of formation + Delta-G solvation = -115.395287 kcal Electronic energy + Delta-G solvation = -30037.657182 eV Core-core repulsion = 25839.283825 eV Total energy + Delta-G solvation = -4198.373357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01615 -39.72073 -38.40480 -37.06228 -35.24578 -32.61377 -32.44392 -32.32944 -31.18573 -30.39856 -29.44207 -27.32687 -25.88922 -24.89845 -23.61297 -22.30459 -21.77249 -21.22640 -21.09155 -20.29953 -19.52689 -17.29467 -17.06327 -16.64267 -16.51094 -16.29104 -16.05725 -15.61920 -15.42983 -15.27748 -14.66515 -14.50829 -14.16014 -13.97007 -13.91564 -13.66547 -13.44317 -12.89314 -12.40327 -12.33064 -12.27176 -12.15807 -12.07453 -11.93210 -11.70373 -11.57712 -11.51556 -11.38687 -11.17235 -10.98273 -10.90331 -10.87413 -10.37018 -10.24508 -9.87383 -9.82776 -9.54953 -9.53551 -9.45320 -9.17436 -8.53350 -8.00261 -7.25358 -6.10590 -4.09210 2.23970 3.06064 3.34175 3.41110 3.50154 3.50376 3.57294 3.69257 4.23658 4.44515 4.49768 4.61221 4.77108 4.94611 4.98106 5.07327 5.10557 5.23099 5.25272 5.28060 5.31660 5.36941 5.41666 5.45476 5.45793 5.46819 5.52355 5.59360 5.60725 5.70047 5.76531 5.82945 5.86230 5.91994 6.19663 6.24283 6.25413 6.42451 6.61091 6.70058 6.73787 6.95498 7.04165 7.30025 7.33120 7.56885 7.71301 8.01147 8.02122 8.35817 8.42405 8.89237 9.54068 11.01720 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.002764 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.078030 B =10128.851226 C =11873.224059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.141 3.859 10 N -0.522 5.522 11 C 0.126 3.874 12 C 0.029 3.971 13 C -0.217 4.217 14 C -0.219 4.219 15 C -0.055 4.055 16 O -0.165 6.165 17 C 0.027 3.973 18 C 0.125 3.875 19 H 0.103 0.897 20 O -0.544 6.544 21 C 0.032 3.968 22 O -0.368 6.368 23 C 0.063 3.937 24 C 0.079 3.921 25 H 0.078 0.922 26 C -0.150 4.150 27 C -0.155 4.155 28 C 0.042 3.958 29 O -0.362 6.362 30 H 0.263 0.737 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.375 0.625 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.073 -10.707 11.778 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.587 4.587 8 H 0.090 0.910 9 C 0.015 3.985 10 N -0.245 5.245 11 C -0.002 4.002 12 C -0.022 4.022 13 C -0.237 4.237 14 C -0.238 4.238 15 C -0.123 4.123 16 O -0.060 6.060 17 C -0.102 4.102 18 C 0.064 3.936 19 H 0.120 0.880 20 O -0.350 6.350 21 C -0.045 4.045 22 O -0.287 6.287 23 C -0.014 4.014 24 C 0.021 3.979 25 H 0.096 0.904 26 C -0.188 4.188 27 C -0.193 4.193 28 C -0.035 4.035 29 O -0.280 6.280 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.211 0.789 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.223 0.777 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 11.053 -10.238 11.491 18.948 hybrid contribution -1.255 0.547 0.098 1.373 sum 9.798 -9.691 11.589 18.006 Atomic orbital electron populations 1.69927 1.06366 1.27014 1.50589 1.24877 0.94566 0.99152 0.94069 0.86808 0.80441 0.83466 0.78835 1.19895 1.18880 1.21678 1.21604 0.90702 0.94332 1.52070 0.91025 1.20538 0.94258 0.85470 0.98282 1.62293 1.58596 1.04185 0.99442 1.20515 0.96191 0.96612 0.86884 1.22532 0.97614 0.89678 0.92395 1.21432 0.96378 1.05412 1.00495 1.21712 1.01815 1.00116 1.00200 1.23905 0.88230 1.02753 0.97450 1.84143 1.41222 1.46520 1.34141 1.22633 0.99428 0.97294 0.90846 1.21766 1.00915 0.81453 0.89418 0.87950 1.86571 1.32157 1.22404 1.93838 1.23321 0.94282 0.98892 0.88054 1.88022 1.57392 1.66398 1.16858 1.22669 0.96793 0.96646 0.85317 1.22751 0.83143 0.99236 0.92782 0.90445 1.22940 0.99103 1.00394 0.96349 1.23132 0.94867 1.00546 1.00742 1.23596 0.96197 0.99194 0.84504 1.89066 1.25097 1.86846 1.27040 0.92750 0.95793 0.92266 0.89726 0.91118 0.84064 0.84207 0.78920 0.91229 0.91993 0.77671 0.93000 0.92930 0.92281 0.92970 0.90127 0.90174 0.90161 0.90444 0.92183 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.91 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.85 27.37 -169.99 -4.65 17.20 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.26 -6.62 6.69 56.52 0.38 -6.24 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.55 -14.56 7.63 -34.44 -0.26 -14.82 16 8 H 0.07 2.03 6.43 -52.49 -0.34 1.69 16 9 C 0.14 3.38 3.81 -4.97 -0.02 3.36 16 10 N -0.52 -10.59 4.54 -237.52 -1.08 -11.66 16 11 C 0.13 2.38 5.39 -4.98 -0.03 2.35 16 12 C 0.03 0.56 6.28 -35.62 -0.22 0.33 16 13 C -0.22 -3.63 10.81 -39.70 -0.43 -4.05 16 14 C -0.22 -3.34 10.91 -39.71 -0.43 -3.77 16 15 C -0.06 -0.88 12.09 29.41 0.36 -0.52 16 16 O -0.17 -3.32 10.16 5.69 0.06 -3.26 16 17 C 0.03 0.47 4.62 -3.83 -0.02 0.45 16 18 C 0.12 2.12 3.48 -26.73 -0.09 2.03 16 19 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 20 O -0.54 -10.71 10.57 -40.08 -0.42 -11.14 16 21 C 0.03 0.46 5.57 37.16 0.21 0.67 16 22 O -0.37 -5.75 10.30 -47.35 -0.49 -6.24 16 23 C 0.06 0.75 5.39 37.15 0.20 0.95 16 24 C 0.08 0.87 3.70 -26.16 -0.10 0.78 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 26 C -0.15 -1.13 6.64 -25.21 -0.17 -1.30 16 27 C -0.16 -1.05 7.16 -24.73 -0.18 -1.22 16 28 C 0.04 0.36 7.72 38.21 0.29 0.66 16 29 O -0.36 -4.70 11.19 -37.24 -0.42 -5.11 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.02 0.63 6.54 -51.93 -0.34 0.29 16 32 H 0.06 1.47 4.81 -51.93 -0.25 1.22 16 33 H 0.08 1.32 7.55 -51.92 -0.39 0.93 16 34 H 0.07 1.51 6.51 -51.93 -0.34 1.17 16 35 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 37 H 0.19 2.28 8.06 -52.48 -0.42 1.86 16 38 H 0.07 1.37 6.02 -51.93 -0.31 1.06 16 39 H 0.06 0.92 7.54 -51.93 -0.39 0.53 16 40 H 0.38 6.98 9.05 45.56 0.41 7.39 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.53 7.70 -51.93 -0.40 0.13 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -33.52 399.84 -8.61 -42.13 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.43 Total: 10.06 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.99 Total: -12.10 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.30 Total: -37.58 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -1.27 Total: -25.75 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.65 Total: 17.20 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.52 -8.61 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249525703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.261 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds