Wall clock time and date at job start Sat Apr 11 2020 05:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00198 * 2 1 4 4 H 1.48506 * 109.46975 * 90.00155 * 3 2 1 5 5 H 1.48494 * 109.47024 * 210.00232 * 3 2 1 6 6 H 1.48497 * 109.47098 * 330.00417 * 3 2 1 7 7 C 1.37874 * 119.99470 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00337 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99819 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.47034 * 174.96951 * 9 7 2 11 11 C 1.46895 * 110.99967 * 66.36849 * 10 9 7 12 12 C 1.50703 * 109.47476 * 76.78003 * 11 10 9 13 13 C 1.34515 * 125.79183 * 89.70942 * 12 11 10 14 14 C 1.41380 * 106.83842 * 179.89318 * 13 12 11 15 15 C 1.34506 * 106.84481 * 0.37546 * 14 13 12 16 16 O 1.34300 * 125.78566 * 270.02917 * 12 11 10 17 17 C 1.46893 * 110.99980 * 302.40808 * 10 9 7 18 18 C 1.53001 * 109.47619 * 281.85281 * 17 10 9 19 19 H 1.09000 * 109.46763 * 305.47461 * 18 17 10 20 20 O 1.42898 * 109.46975 * 65.47405 * 18 17 10 21 21 C 1.53006 * 109.47046 * 185.47652 * 18 17 10 22 22 O 1.42898 * 109.46748 * 175.00075 * 21 18 17 23 23 C 1.42900 * 113.99995 * 179.97438 * 22 21 18 24 24 C 1.52994 * 109.47433 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.86840 * 54.29647 * 24 23 22 26 26 C 1.54096 * 109.88221 * 175.30930 * 24 23 22 27 27 C 1.54807 * 104.19280 * 121.45442 * 26 24 23 28 28 C 1.54996 * 102.09152 * 20.88053 * 27 26 24 29 29 O 1.43745 * 109.88110 * 293.29429 * 24 23 22 30 30 H 0.97001 * 119.99854 * 359.97438 * 1 2 3 31 31 H 1.09004 * 109.46904 * 294.96760 * 9 7 2 32 32 H 1.08999 * 109.47234 * 54.96675 * 9 7 2 33 33 H 1.09007 * 109.46873 * 196.77624 * 11 10 9 34 34 H 1.08994 * 109.46938 * 316.77370 * 11 10 9 35 35 H 1.07998 * 126.57907 * 0.03272 * 13 12 11 36 36 H 1.08005 * 126.57530 * 180.16336 * 14 13 12 37 37 H 1.08004 * 125.79321 * 179.75576 * 15 14 13 38 38 H 1.09004 * 109.47348 * 41.85650 * 17 10 9 39 39 H 1.09000 * 109.47047 * 161.85259 * 17 10 9 40 40 H 0.96705 * 113.99627 * 60.00553 * 20 18 17 41 41 H 1.08999 * 109.46692 * 295.00113 * 21 18 17 42 42 H 1.08993 * 109.47246 * 55.00015 * 21 18 17 43 43 H 1.08996 * 109.47238 * 300.00066 * 23 22 21 44 44 H 1.09004 * 109.47006 * 59.99780 * 23 22 21 45 45 H 1.09006 * 110.49068 * 240.13404 * 26 24 23 46 46 H 1.08999 * 110.48966 * 2.77273 * 26 24 23 47 47 H 1.09000 * 110.90711 * 139.07920 * 27 26 24 48 48 H 1.09001 * 110.90690 * 262.65300 * 27 26 24 49 49 H 1.09001 * 110.61537 * 81.47472 * 28 27 26 50 50 H 1.08996 * 110.62333 * 204.31579 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5466 1.4400 -0.7001 6 1 1.4466 2.6526 -0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 7 4.0010 -2.5739 0.1198 11 6 3.6577 -3.3607 -1.0722 12 6 4.5896 -2.9976 -2.1995 13 6 5.7687 -3.5874 -2.4665 14 6 6.3029 -2.9388 -3.6035 15 6 5.4224 -1.9859 -3.9583 16 8 4.3866 -2.0261 -3.1042 17 6 3.4840 -3.2111 1.3382 18 6 4.2826 -2.7218 2.5481 19 1 5.3449 -2.8951 2.3763 20 8 4.0525 -1.3241 2.7370 21 6 3.8364 -3.4856 3.7965 22 8 4.6606 -3.1129 4.9027 23 6 4.3256 -3.7725 6.1253 24 6 5.2677 -3.3002 7.2344 25 1 5.2462 -2.2124 7.3005 26 6 4.8415 -3.9156 8.5814 27 6 6.0891 -4.7027 9.0508 28 6 7.2235 -4.0274 8.2388 29 8 6.6065 -3.7469 6.9618 30 1 -0.4850 0.8401 0.0004 31 1 3.8744 -0.7602 -0.9328 32 1 3.8751 -0.6045 0.8403 33 1 3.7562 -4.4228 -0.8472 34 1 2.6305 -3.1453 -1.3662 35 1 6.2195 -4.4019 -1.9189 36 1 7.2401 -3.1630 -4.0913 37 1 5.5302 -1.3040 -4.7888 38 1 2.4334 -2.9504 1.4668 39 1 3.5818 -4.2932 1.2519 40 1 3.1262 -1.0960 2.8954 41 1 2.7975 -3.2424 4.0192 42 1 3.9288 -4.5570 3.6192 43 1 3.2969 -3.5349 6.3963 44 1 4.4278 -4.8501 5.9967 45 1 4.5931 -3.1320 9.2973 46 1 3.9955 -4.5888 8.4427 47 1 6.2487 -4.5761 10.1216 48 1 6.0020 -5.7586 8.7944 49 1 7.5420 -3.1028 8.7202 50 1 8.0673 -4.7070 8.1196 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249525703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:49 Heat of formation + Delta-G solvation = -140.892344 kcal Electronic energy + Delta-G solvation = -30038.762817 eV Core-core repulsion = 25839.283825 eV Total energy + Delta-G solvation = -4199.478993 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -43.34497 -40.52260 -39.77473 -38.35155 -36.74131 -34.59141 -33.78741 -33.16616 -32.28391 -31.59160 -30.89323 -29.02489 -27.01290 -25.98112 -25.27913 -23.18091 -22.98020 -22.48858 -21.99776 -21.72438 -21.04055 -19.21304 -18.07162 -17.99168 -17.62746 -17.43386 -17.05124 -16.99683 -16.52993 -16.41172 -16.27351 -15.96770 -15.79758 -15.37084 -14.97830 -14.73246 -14.51843 -14.39038 -14.07827 -13.58234 -13.54433 -13.45506 -13.33308 -12.99800 -12.93495 -12.78017 -12.68843 -12.60367 -12.55470 -12.28194 -12.12905 -12.05602 -11.79993 -11.74325 -11.59112 -11.54816 -10.85972 -10.73975 -10.65258 -10.60886 -10.50433 -9.33521 -8.95006 -8.29654 -6.30017 0.91619 1.33873 1.36247 1.48465 1.81845 2.28997 2.35136 2.53334 2.94782 3.07627 3.41648 3.61595 3.62959 3.88622 3.95035 3.96152 4.08536 4.16983 4.21178 4.23971 4.28193 4.28934 4.37421 4.43612 4.44958 4.51134 4.51847 4.57186 4.64955 4.70161 4.81314 4.84154 4.91038 4.96947 5.00929 5.07007 5.10591 5.17040 5.19241 5.21648 5.31034 5.41333 5.53394 5.77125 5.96063 6.09558 6.25572 6.30572 6.38577 6.43726 6.73932 6.89907 7.35990 8.85550 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010800 B = 0.002764 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.078030 B =10128.851226 C =11873.224059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.263 1.263 5 H -0.268 1.268 6 H -0.288 1.288 7 C -0.531 4.531 8 H 0.047 0.953 9 C 0.158 3.842 10 N -0.523 5.523 11 C 0.130 3.870 12 C -0.013 4.013 13 C -0.206 4.206 14 C -0.219 4.219 15 C -0.062 4.062 16 O -0.204 6.204 17 C 0.031 3.969 18 C 0.126 3.874 19 H 0.094 0.906 20 O -0.566 6.566 21 C 0.040 3.960 22 O -0.398 6.398 23 C 0.058 3.942 24 C 0.072 3.928 25 H 0.061 0.939 26 C -0.144 4.144 27 C -0.148 4.148 28 C 0.032 3.968 29 O -0.399 6.399 30 H 0.264 0.736 31 H 0.001 0.999 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.036 0.964 35 H 0.164 0.836 36 H 0.175 0.825 37 H 0.228 0.772 38 H 0.046 0.954 39 H 0.097 0.903 40 H 0.376 0.624 41 H 0.058 0.942 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.836 -12.024 12.703 21.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.214 1.214 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.031 3.969 10 N -0.245 5.245 11 C 0.002 3.998 12 C -0.063 4.063 13 C -0.226 4.226 14 C -0.238 4.238 15 C -0.129 4.129 16 O -0.101 6.101 17 C -0.097 4.097 18 C 0.067 3.933 19 H 0.112 0.888 20 O -0.372 6.372 21 C -0.037 4.037 22 O -0.318 6.318 23 C -0.019 4.019 24 C 0.014 3.986 25 H 0.079 0.921 26 C -0.182 4.182 27 C -0.185 4.185 28 C -0.044 4.044 29 O -0.319 6.319 30 H 0.073 0.927 31 H 0.019 0.981 32 H 0.072 0.928 33 H 0.137 0.863 34 H 0.054 0.946 35 H 0.181 0.819 36 H 0.192 0.808 37 H 0.244 0.756 38 H 0.065 0.935 39 H 0.115 0.885 40 H 0.224 0.776 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.121 0.879 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.832 -11.579 12.434 21.292 hybrid contribution -1.722 0.863 -0.235 1.941 sum 11.110 -10.717 12.199 19.675 Atomic orbital electron populations 1.70034 1.07742 1.27778 1.52646 1.25557 0.95152 1.02199 0.94304 0.85930 0.78954 0.80075 0.79231 1.18736 1.19233 1.21427 1.21746 0.92034 0.93159 1.50086 0.93540 1.20200 0.92100 0.87939 0.96663 1.62281 1.58297 1.02890 1.01063 1.20540 0.94477 0.98226 0.86526 1.22643 0.99123 0.91219 0.93337 1.21794 0.95199 1.05080 1.00522 1.22138 1.02804 0.99275 0.99588 1.24754 0.87272 1.03435 0.97461 1.84106 1.43201 1.47467 1.35301 1.22664 0.97904 0.99148 0.89991 1.21790 1.00264 0.80656 0.90623 0.88819 1.86529 1.32325 1.24314 1.94017 1.23168 0.94194 0.99566 0.86762 1.87977 1.58097 1.67499 1.18221 1.22908 0.97933 0.96936 0.84096 1.22863 0.82723 0.98643 0.94349 0.92052 1.22946 0.99806 1.00953 0.94474 1.23129 0.93370 1.00346 1.01673 1.23838 0.97118 0.99981 0.83496 1.89018 1.26168 1.87056 1.29641 0.92673 0.98087 0.92766 0.86270 0.94610 0.81888 0.80799 0.75575 0.93544 0.88501 0.77573 0.92414 0.90563 0.90649 0.92050 0.88804 0.88960 0.87935 0.90046 0.91707 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.96 21.45 0.30 -56.98 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.93 45.92 27.37 68.60 1.88 47.80 16 4 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 5 H -0.27 -13.23 6.69 99.48 0.67 -12.56 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 7 C -0.53 -29.14 7.63 25.60 0.20 -28.95 16 8 H 0.05 2.75 6.43 -2.91 -0.02 2.73 16 9 C 0.16 7.76 3.81 85.56 0.33 8.09 16 10 N -0.52 -21.26 4.54 -905.37 -4.11 -25.36 16 11 C 0.13 4.93 5.39 85.56 0.46 5.39 16 12 C -0.01 -0.49 6.28 24.83 0.16 -0.33 16 13 C -0.21 -6.46 10.81 22.19 0.24 -6.22 16 14 C -0.22 -6.09 10.91 22.19 0.24 -5.85 16 15 C -0.06 -1.88 12.09 66.97 0.81 -1.07 16 16 O -0.20 -8.24 10.16 -2.54 -0.03 -8.27 16 17 C 0.03 1.08 4.62 86.30 0.40 1.48 16 18 C 0.13 4.25 3.48 30.60 0.11 4.36 16 19 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 20 O -0.57 -22.54 10.57 -144.34 -1.53 -24.07 16 21 C 0.04 1.11 5.57 71.98 0.40 1.51 16 22 O -0.40 -12.23 10.30 -137.39 -1.41 -13.65 16 23 C 0.06 1.30 5.39 71.98 0.39 1.69 16 24 C 0.07 1.54 3.70 30.96 0.11 1.66 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 C -0.14 -1.86 6.64 31.58 0.21 -1.65 16 27 C -0.15 -1.63 7.16 31.89 0.23 -1.41 16 28 C 0.03 0.51 7.72 72.66 0.56 1.07 16 29 O -0.40 -10.20 11.19 -147.06 -1.65 -11.85 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.00 0.05 6.54 -2.38 -0.02 0.04 16 32 H 0.05 2.73 4.81 -2.39 -0.01 2.72 16 33 H 0.12 3.56 7.55 -2.38 -0.02 3.54 16 34 H 0.04 1.59 6.51 -2.39 -0.02 1.58 16 35 H 0.16 4.25 8.06 -2.91 -0.02 4.23 16 36 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.23 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.05 1.86 6.02 -2.38 -0.01 1.84 16 39 H 0.10 2.67 7.54 -2.39 -0.02 2.65 16 40 H 0.38 14.37 9.05 -74.05 -0.67 13.70 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.09 0.97 7.70 -2.39 -0.02 0.95 16 47 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -75.13 399.84 -1.02 -76.15 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.22 Total: 34.50 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: 5.30 Total: -18.26 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -3.81 Total: -82.34 kcal Atomic # 8 Polarization: -53.22 SS G_CDS: -4.61 Total: -57.84 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.80 kcal Total: -75.13 -1.02 -76.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249525703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.745 kcal (2) G-P(sol) polarization free energy of solvation -75.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds