Wall clock time and date at job start Sat Apr 11 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46735 * 2 1 4 4 C 1.46497 * 119.99910 * 262.72670 * 3 2 1 5 5 C 1.52997 * 109.47358 * 270.00072 * 4 3 2 6 6 N 1.46500 * 109.47732 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00502 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99702 * 0.02562 * 7 6 5 9 9 C 1.38808 * 119.99951 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99749 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00407 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46910 * 90.00194 * 11 9 7 13 13 H 1.48491 * 109.47431 * 210.00365 * 11 9 7 14 14 H 1.48502 * 109.47100 * 330.00389 * 11 9 7 15 15 C 1.34781 * 120.00087 * 82.72649 * 3 2 1 16 16 O 1.21517 * 119.99909 * 183.09917 * 15 3 2 17 17 C 1.48170 * 119.99780 * 3.09798 * 15 3 2 18 18 C 1.39106 * 119.66658 * 173.21025 * 17 15 3 19 19 C 1.39722 * 118.91900 * 180.26330 * 18 17 15 20 20 C 1.48374 * 120.87256 * 180.02562 * 19 18 17 21 21 C 1.39350 * 120.12237 * 359.69811 * 20 19 18 22 22 C 1.38007 * 119.87628 * 179.74743 * 21 20 19 23 23 C 1.38328 * 120.11875 * 0.52754 * 22 21 20 24 24 C 1.38318 * 120.25119 * 359.72177 * 23 22 21 25 25 C 1.38011 * 120.12020 * 0.02562 * 24 23 22 26 26 C 1.39736 * 118.25483 * 0.02562 * 19 18 17 27 27 C 1.38314 * 119.21319 * 0.02562 * 26 19 18 28 28 N 1.31578 * 121.02981 * 359.97092 * 27 26 19 29 29 H 1.09006 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47136 * 299.99621 * 1 2 3 31 31 H 1.08998 * 109.46746 * 60.00428 * 1 2 3 32 32 H 1.08994 * 109.47760 * 239.99956 * 2 1 3 33 33 H 1.08998 * 109.47451 * 119.99323 * 2 1 3 34 34 H 1.09000 * 109.47177 * 29.99853 * 4 3 2 35 35 H 1.09000 * 109.47597 * 150.00200 * 4 3 2 36 36 H 1.09003 * 109.47301 * 300.00096 * 5 4 3 37 37 H 1.08996 * 109.47378 * 59.99535 * 5 4 3 38 38 H 0.97001 * 119.99662 * 0.02562 * 6 5 4 39 39 H 0.97005 * 120.00000 * 179.97438 * 10 9 7 40 40 H 1.08007 * 120.54198 * 0.25979 * 18 17 15 41 41 H 1.08003 * 120.05938 * 359.97412 * 21 20 19 42 42 H 1.07995 * 119.94366 * 180.25477 * 22 21 20 43 43 H 1.08002 * 119.87168 * 179.74607 * 23 22 21 44 44 H 1.08001 * 119.94199 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.06484 * 179.97438 * 25 24 23 46 46 H 1.07993 * 120.39274 * 179.97438 * 26 19 18 47 47 H 1.08000 * 119.48708 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4138 2.0183 -1.2585 5 6 3.9006 1.7633 -1.5141 6 7 4.2961 2.3998 -2.7729 7 6 5.5902 2.3058 -3.2108 8 1 6.3192 1.7621 -2.6283 9 6 5.9649 2.9094 -4.4032 10 7 7.2086 2.8187 -4.8243 11 14 4.7038 3.8493 -5.4111 12 1 4.6892 5.2715 -4.9840 13 1 5.0604 3.7683 -6.8503 14 1 3.3593 3.2553 -5.2002 15 6 2.1035 2.0659 1.1578 16 8 2.4548 3.2292 1.1514 17 6 1.7690 1.4001 2.4385 18 6 1.9938 2.0650 3.6395 19 6 1.6778 1.4204 4.8382 20 6 1.8993 2.0894 6.1439 21 6 2.4348 3.3751 6.1889 22 6 2.6339 3.9946 7.4059 23 6 2.3131 3.3374 8.5801 24 6 1.7861 2.0592 8.5416 25 6 1.5780 1.4321 7.3299 26 6 1.1476 0.1290 4.7750 27 6 0.9558 -0.4622 3.5394 28 7 1.2639 0.1723 2.4287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.8276 1.6007 -2.0771 35 1 2.2352 3.0917 -1.1944 36 1 4.4868 2.1808 -0.6955 37 1 4.0793 0.6900 -1.5782 38 1 3.6414 2.8884 -3.2959 39 1 7.4704 3.2402 -5.6579 40 1 2.4060 3.0633 3.6454 41 1 2.6901 3.8872 5.2729 42 1 3.0450 4.9926 7.4419 43 1 2.4743 3.8245 9.5305 44 1 1.5370 1.5508 9.4613 45 1 1.1668 0.4338 7.3008 46 1 0.8914 -0.4013 5.6802 47 1 0.5467 -1.4603 3.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754074583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:40 Heat of formation + Delta-G solvation = 65.661628 kcal Electronic energy + Delta-G solvation = -28090.426441 eV Core-core repulsion = 24239.505971 eV Total energy + Delta-G solvation = -3850.920470 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14742 -39.71147 -38.78002 -36.32454 -34.84986 -33.96645 -32.17229 -31.67990 -31.11655 -30.44132 -29.96268 -28.06675 -25.24401 -24.56606 -23.52793 -23.36241 -22.24299 -21.97340 -21.28714 -19.59825 -17.96999 -17.61773 -17.22844 -16.84109 -16.25659 -15.88990 -15.69140 -15.35983 -14.90513 -14.64999 -14.45527 -14.21962 -14.09254 -13.91568 -13.68405 -13.60421 -13.56967 -13.24692 -13.15697 -12.69744 -12.53191 -12.36526 -11.88738 -11.71558 -11.50539 -11.31981 -11.23096 -11.08924 -11.03183 -10.69757 -10.60620 -10.20677 -10.12163 -9.56626 -9.53255 -9.39955 -9.36107 -8.85384 -8.78913 -8.47683 -7.20050 -5.72357 -3.08324 0.08625 0.50676 0.95901 1.42286 2.67287 2.94757 3.36282 3.41614 3.45232 3.49264 3.71568 3.85480 3.98241 4.20425 4.47674 4.53332 4.57242 4.63631 4.66781 4.72094 4.90710 5.02524 5.10347 5.17277 5.26337 5.34472 5.40351 5.44821 5.54763 5.58865 5.59240 5.63121 5.64054 5.65974 5.79041 5.87544 5.97532 6.01844 6.06485 6.07159 6.14020 6.17949 6.43709 6.50186 6.58582 6.68922 6.86988 7.36676 7.52272 8.02880 8.18876 8.45996 9.24649 9.96845 10.16443 11.45999 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.002301 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.683186 B =12167.565271 C =13375.209140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.097 3.903 3 N -0.585 5.585 4 C 0.102 3.898 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.242 4.242 8 H 0.090 0.910 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.886 3.114 12 H -0.283 1.283 13 H -0.291 1.291 14 H -0.277 1.277 15 C 0.564 3.436 16 O -0.529 6.529 17 C 0.092 3.908 18 C -0.105 4.105 19 C -0.005 4.005 20 C -0.056 4.056 21 C -0.100 4.100 22 C -0.117 4.117 23 C -0.112 4.112 24 C -0.121 4.121 25 C -0.102 4.102 26 C -0.148 4.148 27 C 0.096 3.904 28 N -0.446 5.446 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.030 0.970 37 H 0.028 0.972 38 H 0.361 0.639 39 H 0.259 0.741 40 H 0.150 0.850 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.140 0.860 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.022 -6.885 28.536 34.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.025 4.025 3 N -0.316 5.316 4 C -0.021 4.021 5 C 0.019 3.981 6 N -0.399 5.399 7 C -0.371 4.371 8 H 0.108 0.892 9 C -0.192 4.192 10 N -0.583 5.583 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.203 1.203 15 C 0.350 3.650 16 O -0.405 6.405 17 C -0.046 4.046 18 C -0.126 4.126 19 C -0.013 4.013 20 C -0.056 4.056 21 C -0.118 4.118 22 C -0.135 4.135 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.121 4.121 26 C -0.168 4.168 27 C -0.063 4.063 28 N -0.159 5.159 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.193 0.807 39 H 0.069 0.931 40 H 0.168 0.832 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.158 0.842 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.713 -6.721 27.656 33.523 hybrid contribution -0.655 0.975 -0.011 1.174 sum -18.368 -5.747 27.645 33.685 Atomic orbital electron populations 1.22014 0.96033 1.01622 1.01286 1.22145 0.94548 0.81556 1.04280 1.47785 1.62562 1.14777 1.06453 1.21801 0.97008 0.99298 0.83966 1.20889 0.91490 0.96369 0.89362 1.42557 1.09505 1.65006 1.22869 1.19035 0.85278 1.28691 1.04139 0.89244 1.24673 0.96076 1.00626 0.97871 1.69707 1.15926 1.49231 1.23406 0.86516 0.81358 0.80484 0.80000 1.20983 1.21714 1.20321 1.17885 0.78343 0.85760 0.82987 1.90814 1.47502 1.15866 1.86305 1.21155 0.98281 0.91221 0.93916 1.22178 0.97975 1.01555 0.90847 1.19109 0.96200 0.93686 0.92330 1.18648 1.00959 0.94557 0.91398 1.21385 0.97562 0.94059 0.98788 1.21169 0.99883 1.00302 0.92176 1.21311 0.98171 0.95037 0.98481 1.21109 0.99686 0.95402 0.97711 1.21223 0.99373 0.99841 0.91618 1.22382 0.99479 0.94941 1.00005 1.22876 0.96022 1.00066 0.87297 1.68164 1.09802 1.07551 1.30354 0.91974 0.92548 0.93498 0.91047 0.86771 0.90293 0.89680 0.95153 0.95433 0.80655 0.93071 0.83233 0.85145 0.85419 0.85767 0.85622 0.85533 0.84213 0.81786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.57 37.16 0.36 -1.21 16 2 C 0.10 1.17 5.71 -4.04 -0.02 1.15 16 3 N -0.58 -8.88 2.49 -174.68 -0.44 -9.32 16 4 C 0.10 1.75 5.51 -4.04 -0.02 1.73 16 5 C 0.15 3.11 6.58 -4.04 -0.03 3.08 16 6 N -0.75 -18.98 5.41 -59.91 -0.32 -19.30 16 7 C -0.24 -7.16 10.47 -15.06 -0.16 -7.32 16 8 H 0.09 2.84 8.06 -52.49 -0.42 2.41 16 9 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 10 N -0.93 -30.15 13.97 55.49 0.78 -29.38 16 11 Si 0.89 22.77 27.73 -169.99 -4.71 18.05 16 12 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 15 C 0.56 9.08 7.60 -12.18 -0.09 8.99 16 16 O -0.53 -10.18 15.90 5.35 0.09 -10.09 16 17 C 0.09 1.18 6.51 -83.06 -0.54 0.64 16 18 C -0.10 -1.21 9.02 -38.71 -0.35 -1.56 16 19 C -0.01 -0.05 5.91 -104.61 -0.62 -0.67 16 20 C -0.06 -0.48 5.88 -104.90 -0.62 -1.09 16 21 C -0.10 -0.86 9.45 -39.25 -0.37 -1.23 16 22 C -0.12 -0.85 10.03 -39.63 -0.40 -1.25 16 23 C -0.11 -0.71 10.04 -39.52 -0.40 -1.10 16 24 C -0.12 -0.74 10.03 -39.64 -0.40 -1.14 16 25 C -0.10 -0.70 9.45 -39.25 -0.37 -1.07 16 26 C -0.15 -1.07 9.51 -38.99 -0.37 -1.44 16 27 C 0.10 0.73 11.17 -17.63 -0.20 0.53 16 28 N -0.45 -4.72 4.31 -9.89 -0.04 -4.76 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.62 6.74 -51.93 -0.35 0.27 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 33 H 0.11 1.32 5.24 -52.34 -0.27 1.05 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 1.57 7.38 -51.93 -0.38 1.19 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.36 8.75 5.53 -40.82 -0.23 8.52 16 39 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 40 H 0.15 1.75 5.94 -52.48 -0.31 1.44 16 41 H 0.13 1.09 6.30 -52.48 -0.33 0.76 16 42 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.58 6.29 -52.48 -0.33 0.25 16 46 H 0.14 0.59 6.33 -52.49 -0.33 0.25 16 47 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 385.48 15.07 5.81 5.81 Total: -1.00 -35.99 385.48 -9.88 -45.88 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.35 Total: 6.08 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -4.69 Total: -2.96 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.03 Total: -62.76 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.71 Total: 18.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.99 -9.88 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754074583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.538 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds