Wall clock time and date at job start Sat Apr 11 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.46735 * 2 1 4 4 C 1.46497 * 119.99910 * 262.72670 * 3 2 1 5 5 C 1.52997 * 109.47358 * 270.00072 * 4 3 2 6 6 N 1.46500 * 109.47732 * 179.97438 * 5 4 3 7 7 C 1.36939 * 120.00502 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99702 * 0.02562 * 7 6 5 9 9 C 1.38808 * 119.99951 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99749 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00407 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46910 * 90.00194 * 11 9 7 13 13 H 1.48491 * 109.47431 * 210.00365 * 11 9 7 14 14 H 1.48502 * 109.47100 * 330.00389 * 11 9 7 15 15 C 1.34781 * 120.00087 * 82.72649 * 3 2 1 16 16 O 1.21517 * 119.99909 * 183.09917 * 15 3 2 17 17 C 1.48170 * 119.99780 * 3.09798 * 15 3 2 18 18 C 1.39106 * 119.66658 * 173.21025 * 17 15 3 19 19 C 1.39722 * 118.91900 * 180.26330 * 18 17 15 20 20 C 1.48374 * 120.87256 * 180.02562 * 19 18 17 21 21 C 1.39350 * 120.12237 * 359.69811 * 20 19 18 22 22 C 1.38007 * 119.87628 * 179.74743 * 21 20 19 23 23 C 1.38328 * 120.11875 * 0.52754 * 22 21 20 24 24 C 1.38318 * 120.25119 * 359.72177 * 23 22 21 25 25 C 1.38011 * 120.12020 * 0.02562 * 24 23 22 26 26 C 1.39736 * 118.25483 * 0.02562 * 19 18 17 27 27 C 1.38314 * 119.21319 * 0.02562 * 26 19 18 28 28 N 1.31578 * 121.02981 * 359.97092 * 27 26 19 29 29 H 1.09006 * 109.46596 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47136 * 299.99621 * 1 2 3 31 31 H 1.08998 * 109.46746 * 60.00428 * 1 2 3 32 32 H 1.08994 * 109.47760 * 239.99956 * 2 1 3 33 33 H 1.08998 * 109.47451 * 119.99323 * 2 1 3 34 34 H 1.09000 * 109.47177 * 29.99853 * 4 3 2 35 35 H 1.09000 * 109.47597 * 150.00200 * 4 3 2 36 36 H 1.09003 * 109.47301 * 300.00096 * 5 4 3 37 37 H 1.08996 * 109.47378 * 59.99535 * 5 4 3 38 38 H 0.97001 * 119.99662 * 0.02562 * 6 5 4 39 39 H 0.97005 * 120.00000 * 179.97438 * 10 9 7 40 40 H 1.08007 * 120.54198 * 0.25979 * 18 17 15 41 41 H 1.08003 * 120.05938 * 359.97412 * 21 20 19 42 42 H 1.07995 * 119.94366 * 180.25477 * 22 21 20 43 43 H 1.08002 * 119.87168 * 179.74607 * 23 22 21 44 44 H 1.08001 * 119.94199 * 180.02562 * 24 23 22 45 45 H 1.08006 * 120.06484 * 179.97438 * 25 24 23 46 46 H 1.07993 * 120.39274 * 179.97438 * 26 19 18 47 47 H 1.08000 * 119.48708 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4138 2.0183 -1.2585 5 6 3.9006 1.7633 -1.5141 6 7 4.2961 2.3998 -2.7729 7 6 5.5902 2.3058 -3.2108 8 1 6.3192 1.7621 -2.6283 9 6 5.9649 2.9094 -4.4032 10 7 7.2086 2.8187 -4.8243 11 14 4.7038 3.8493 -5.4111 12 1 4.6892 5.2715 -4.9840 13 1 5.0604 3.7683 -6.8503 14 1 3.3593 3.2553 -5.2002 15 6 2.1035 2.0659 1.1578 16 8 2.4548 3.2292 1.1514 17 6 1.7690 1.4001 2.4385 18 6 1.9938 2.0650 3.6395 19 6 1.6778 1.4204 4.8382 20 6 1.8993 2.0894 6.1439 21 6 2.4348 3.3751 6.1889 22 6 2.6339 3.9946 7.4059 23 6 2.3131 3.3374 8.5801 24 6 1.7861 2.0592 8.5416 25 6 1.5780 1.4321 7.3299 26 6 1.1476 0.1290 4.7750 27 6 0.9558 -0.4622 3.5394 28 7 1.2639 0.1723 2.4287 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 1.8276 1.6007 -2.0771 35 1 2.2352 3.0917 -1.1944 36 1 4.4868 2.1808 -0.6955 37 1 4.0793 0.6900 -1.5782 38 1 3.6414 2.8884 -3.2959 39 1 7.4704 3.2402 -5.6579 40 1 2.4060 3.0633 3.6454 41 1 2.6901 3.8872 5.2729 42 1 3.0450 4.9926 7.4419 43 1 2.4743 3.8245 9.5305 44 1 1.5370 1.5508 9.4613 45 1 1.1668 0.4338 7.3008 46 1 0.8914 -0.4013 5.6802 47 1 0.5467 -1.4603 3.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754074583.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:39 Heat of formation + Delta-G solvation = 44.199866 kcal Electronic energy + Delta-G solvation = -28091.357092 eV Core-core repulsion = 24239.505971 eV Total energy + Delta-G solvation = -3851.851121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.01541 -40.57683 -39.54664 -37.72635 -36.56642 -34.77910 -33.78405 -32.77301 -31.83719 -31.66695 -30.58348 -29.59907 -26.43575 -25.32614 -24.90844 -24.26888 -23.47629 -22.76480 -22.52391 -20.68842 -19.69081 -18.68115 -18.26232 -17.72658 -17.05786 -16.92208 -16.63723 -16.39286 -16.26399 -15.74158 -15.48934 -15.43914 -15.17973 -14.99277 -14.88127 -14.82659 -14.62304 -14.28296 -13.90907 -13.81564 -13.70039 -13.41174 -13.13103 -13.03291 -12.88069 -12.64849 -12.38543 -12.23059 -12.12017 -11.99850 -11.85531 -11.84365 -11.39138 -11.30454 -11.04904 -10.34238 -10.23500 -9.91762 -9.70639 -9.40330 -9.36889 -8.07556 -5.43823 -0.58679 -0.27423 0.44221 0.81010 1.35637 1.41045 1.47627 1.64236 1.80737 2.45305 2.67533 2.97684 3.01730 3.23105 3.31920 3.57088 3.68982 3.87165 3.89889 3.94188 4.02886 4.08175 4.11042 4.24009 4.27022 4.38496 4.46233 4.51714 4.54864 4.59346 4.65491 4.68533 4.78989 4.89234 4.95359 5.01718 5.04094 5.05804 5.10085 5.20523 5.39504 5.50166 5.55656 5.56497 5.58494 5.67172 5.70275 6.01175 6.14995 6.27324 6.66885 6.98713 7.02050 7.72803 7.95229 9.13676 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.002301 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.683186 B =12167.565271 C =13375.209140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.093 3.907 3 N -0.585 5.585 4 C 0.115 3.885 5 C 0.152 3.848 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.052 0.948 9 C -0.062 4.062 10 N -0.981 5.981 11 Si 0.960 3.040 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.246 1.246 15 C 0.556 3.444 16 O -0.577 6.577 17 C 0.068 3.932 18 C -0.121 4.121 19 C -0.010 4.010 20 C -0.075 4.075 21 C -0.124 4.124 22 C -0.131 4.131 23 C -0.114 4.114 24 C -0.123 4.123 25 C -0.101 4.101 26 C -0.129 4.129 27 C 0.100 3.900 28 N -0.453 5.453 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.003 0.997 37 H 0.033 0.967 38 H 0.369 0.631 39 H 0.261 0.739 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.181 0.819 47 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.339 -9.120 30.602 38.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 N -0.315 5.315 4 C -0.009 4.009 5 C 0.024 3.976 6 N -0.400 5.400 7 C -0.374 4.374 8 H 0.070 0.930 9 C -0.254 4.254 10 N -0.631 5.631 11 Si 0.786 3.214 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.170 1.170 15 C 0.344 3.656 16 O -0.456 6.456 17 C -0.067 4.067 18 C -0.143 4.143 19 C -0.017 4.017 20 C -0.075 4.075 21 C -0.143 4.143 22 C -0.149 4.149 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.119 4.119 26 C -0.149 4.149 27 C -0.059 4.059 28 N -0.165 5.165 29 H 0.106 0.894 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.140 0.860 34 H 0.122 0.878 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.051 0.949 38 H 0.203 0.797 39 H 0.069 0.931 40 H 0.149 0.851 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.165 0.835 44 H 0.173 0.827 45 H 0.173 0.827 46 H 0.198 0.802 47 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -21.073 -8.992 29.748 37.548 hybrid contribution 0.439 1.578 -0.427 1.693 sum -20.634 -7.414 29.321 36.612 Atomic orbital electron populations 1.21928 0.94330 1.03058 1.00602 1.22397 0.95875 0.79614 1.04862 1.47914 1.62189 1.15934 1.05469 1.21516 0.94346 0.99047 0.85983 1.20917 0.93998 0.95868 0.86775 1.42485 1.08044 1.65370 1.24081 1.18971 0.86558 1.27953 1.03886 0.93023 1.25586 0.98491 1.02025 0.99306 1.69892 1.18454 1.50651 1.24115 0.85339 0.79728 0.78701 0.77623 1.20635 1.21497 1.16997 1.18495 0.77365 0.85429 0.84304 1.90767 1.49691 1.17992 1.87165 1.20646 1.01123 0.92657 0.92309 1.22124 0.99055 1.01249 0.91831 1.19292 0.96103 0.94675 0.91671 1.18770 1.02136 0.94718 0.91902 1.21471 0.98912 0.94917 0.98970 1.21374 1.00257 1.00970 0.92249 1.21660 0.97270 0.95419 0.98858 1.21511 0.98636 0.95230 0.98649 1.21554 0.98589 1.00879 0.90902 1.22846 0.96843 0.93608 1.01559 1.23625 0.94544 1.01204 0.86478 1.68058 1.09989 1.06407 1.32057 0.89354 0.93298 0.94095 0.90640 0.86030 0.87757 0.91124 0.97916 0.94889 0.79748 0.93067 0.85144 0.86648 0.84597 0.83540 0.82748 0.82712 0.80179 0.77513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.57 71.98 0.69 -1.92 16 2 C 0.09 2.13 5.71 86.38 0.49 2.62 16 3 N -0.58 -18.01 2.49 -824.86 -2.06 -20.06 16 4 C 0.11 3.97 5.51 86.38 0.48 4.45 16 5 C 0.15 6.61 6.58 86.38 0.57 7.17 16 6 N -0.75 -38.31 5.41 -343.46 -1.86 -40.17 16 7 C -0.24 -14.84 10.47 84.03 0.88 -13.96 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 9 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 10 N -0.98 -65.04 13.97 21.65 0.30 -64.74 16 11 Si 0.96 47.03 27.73 68.60 1.90 48.94 16 12 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 14 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 15 C 0.56 18.90 7.60 86.88 0.66 19.56 16 16 O -0.58 -24.10 15.90 -3.77 -0.06 -24.16 16 17 C 0.07 1.81 6.51 41.85 0.27 2.09 16 18 C -0.12 -3.00 9.02 22.84 0.21 -2.79 16 19 C -0.01 -0.17 5.91 -19.86 -0.12 -0.29 16 20 C -0.08 -1.24 5.88 -20.04 -0.12 -1.36 16 21 C -0.12 -2.29 9.45 22.48 0.21 -2.08 16 22 C -0.13 -1.91 10.03 22.24 0.22 -1.69 16 23 C -0.11 -1.23 10.04 22.31 0.22 -1.01 16 24 C -0.12 -1.12 10.03 22.23 0.22 -0.90 16 25 C -0.10 -1.08 9.45 22.48 0.21 -0.87 16 26 C -0.13 -1.40 9.51 22.65 0.22 -1.19 16 27 C 0.10 1.16 11.17 84.75 0.95 2.11 16 28 N -0.45 -8.85 4.31 -185.19 -0.80 -9.65 16 29 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.05 0.99 6.74 -2.39 -0.02 0.98 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.65 8.02 -2.39 -0.02 1.63 16 33 H 0.12 2.63 5.24 -3.19 -0.02 2.61 16 34 H 0.10 3.09 8.07 -2.39 -0.02 3.07 16 35 H 0.07 2.67 7.38 -2.39 -0.02 2.66 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.37 17.49 5.53 -92.71 -0.51 16.98 16 39 H 0.26 16.29 8.31 -92.70 -0.77 15.52 16 40 H 0.13 3.58 5.94 -2.91 -0.02 3.56 16 41 H 0.12 2.33 6.30 -2.91 -0.02 2.31 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 43 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.16 0.65 6.29 -2.91 -0.02 0.63 16 46 H 0.18 0.47 6.33 -2.91 -0.02 0.45 16 47 H 0.21 0.59 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -83.37 385.48 4.59 -78.78 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.42 Total: 24.51 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.73 Total: 6.56 kcal Atomic # 7 Polarization: -130.21 SS G_CDS: -4.41 Total: -134.62 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.06 Total: -24.16 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.94 kcal Total: -83.37 4.59 -78.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754074583.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.977 kcal (2) G-P(sol) polarization free energy of solvation -83.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds