Wall clock time and date at job start Sat Apr 11 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.47051 * 125.41126 * 2 1 4 4 C 1.54106 * 103.86392 * 179.87348 * 3 2 1 5 5 H 1.08992 * 110.46592 * 118.93045 * 4 3 2 6 6 C 1.50704 * 110.75645 * 241.68036 * 4 3 2 7 7 O 1.21278 * 120.00181 * 96.01887 * 6 4 3 8 8 N 1.34775 * 119.99959 * 276.01685 * 6 4 3 9 9 C 1.46493 * 120.00302 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47647 * 175.57647 * 9 8 6 11 11 N 1.46895 * 115.55184 * 279.59849 * 10 9 8 12 12 C 1.46899 * 110.99832 * 295.73083 * 11 10 9 13 13 C 1.50699 * 109.47337 * 185.27702 * 12 11 10 14 14 O 1.21296 * 119.99791 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99727 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00029 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99991 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00241 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99817 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47047 * 89.99945 * 20 18 16 22 22 H 1.48498 * 109.47117 * 209.99999 * 20 18 16 23 23 H 1.48502 * 109.47112 * 329.99994 * 20 18 16 24 24 C 1.53000 * 117.49773 * 133.92268 * 10 9 8 25 25 C 1.53006 * 117.49617 * 65.26246 * 10 9 8 26 26 N 1.47048 * 103.85981 * 0.37321 * 4 3 2 27 27 C 1.33950 * 125.40834 * 180.30912 * 2 1 3 28 28 O 1.21580 * 123.04567 * 359.97336 * 27 2 1 29 29 H 1.09001 * 109.47637 * 179.71944 * 1 2 3 30 30 H 1.09007 * 109.47334 * 299.71656 * 1 2 3 31 31 H 1.09001 * 109.47592 * 59.71710 * 1 2 3 32 32 H 1.09005 * 110.55127 * 298.59462 * 3 2 1 33 33 H 1.09001 * 110.54890 * 61.40655 * 3 2 1 34 34 H 0.97005 * 120.00219 * 359.97438 * 8 6 4 35 35 H 1.09002 * 109.46918 * 295.57750 * 9 8 6 36 36 H 1.09003 * 109.47401 * 55.57483 * 9 8 6 37 37 H 1.00909 * 111.00089 * 59.68004 * 11 10 9 38 38 H 1.08999 * 109.47596 * 305.28218 * 12 11 10 39 39 H 1.09006 * 109.47270 * 65.27966 * 12 11 10 40 40 H 0.96999 * 120.00131 * 0.02562 * 15 13 12 41 41 H 0.96996 * 120.00365 * 180.02562 * 19 18 16 42 42 H 1.09000 * 117.50173 * 0.02562 * 24 10 9 43 43 H 1.09008 * 117.49692 * 145.02566 * 24 10 9 44 44 H 1.08998 * 117.49705 * 214.97966 * 25 10 9 45 45 H 1.08998 * 117.49601 * 359.97438 * 25 10 9 46 46 H 0.97004 * 125.41141 * 179.75846 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7503 0.6325 0.0033 5 1 4.2878 0.9508 -0.8898 6 6 4.4904 1.0597 1.2447 7 8 4.5387 0.3220 2.2060 8 7 5.0987 2.2617 1.2864 9 6 5.8186 2.6768 2.4929 10 6 6.5039 4.0213 2.2407 11 7 7.7753 3.9568 1.5078 12 6 8.7920 3.2305 2.2804 13 6 10.1132 3.2961 1.5585 14 8 10.1996 3.8899 0.5044 15 7 11.1991 2.6959 2.0848 16 6 12.4012 2.7560 1.4283 17 1 12.4781 3.2847 0.4897 18 6 13.5207 2.1367 1.9706 19 7 14.6731 2.1947 1.3416 20 14 13.3876 1.2216 3.5936 21 1 13.0353 -0.1975 3.3343 22 1 14.6886 1.2864 4.3065 23 1 12.3330 1.8485 4.4303 24 6 6.3631 5.0990 3.3176 25 6 5.6070 5.2361 1.9937 26 7 3.5537 -0.8247 -0.0045 27 6 2.2410 -1.0917 -0.0059 28 8 1.7945 -2.2226 -0.0115 29 1 -0.3634 -1.0276 -0.0050 30 1 -0.3634 0.5094 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 2.1406 1.7934 -0.8962 33 1 2.1406 1.7934 0.8962 34 1 5.0605 2.8517 0.5174 35 1 5.1150 2.7770 3.3194 36 1 6.5695 1.9277 2.7438 37 1 7.6473 3.5406 0.5975 38 1 8.8933 3.6854 3.2657 39 1 8.4894 2.1891 2.3904 40 1 11.1302 2.2213 2.9280 41 1 15.4545 1.7621 1.7199 42 1 5.7826 4.8500 4.2060 43 1 7.2139 5.7604 3.4821 44 1 5.9606 5.9875 1.2878 45 1 4.5288 5.0773 2.0104 46 1 4.2620 -1.4875 -0.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754521337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:47 Heat of formation + Delta-G solvation = -38.045676 kcal Electronic energy + Delta-G solvation = -29177.797161 eV Core-core repulsion = 24911.530342 eV Total energy + Delta-G solvation = -4266.266819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77114 -39.95098 -38.84526 -37.95455 -36.57469 -34.61368 -34.46088 -34.11139 -32.96863 -31.67665 -30.21295 -28.09143 -27.09139 -26.59169 -24.13686 -23.98870 -22.63465 -20.98243 -20.95047 -19.93525 -19.41889 -18.39696 -18.29105 -18.06106 -16.97079 -16.53491 -16.32539 -15.94910 -15.64007 -15.40660 -15.10547 -14.87798 -14.68077 -14.47414 -14.28876 -14.03461 -14.02370 -13.90817 -13.32077 -13.15930 -12.91225 -12.79055 -12.68025 -12.56043 -12.41690 -12.11513 -11.73727 -11.64217 -11.19836 -10.83739 -10.74402 -10.62094 -10.59537 -10.21242 -10.00815 -9.64040 -9.61031 -9.50897 -9.07598 -8.74568 -8.32581 -8.21620 -6.34647 -3.86329 1.91522 2.23323 2.41957 2.86399 3.00599 3.05086 3.13501 3.39023 3.53790 3.68320 3.73121 3.83531 4.07444 4.10238 4.25945 4.29220 4.53019 4.60020 4.73969 4.77139 4.87268 4.88059 5.05193 5.15612 5.25897 5.27294 5.32097 5.40237 5.43969 5.44972 5.64248 5.72885 5.78499 5.86615 5.92035 6.02223 6.18620 6.67016 6.91647 6.97657 7.05151 7.36831 7.53836 7.71332 8.10012 8.19401 8.55407 8.90901 9.38366 9.77720 10.78274 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002336 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.355104 B =11984.946734 C =13185.403400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.637 5.637 3 C 0.108 3.892 4 C 0.104 3.896 5 H 0.119 0.881 6 C 0.501 3.499 7 O -0.520 6.520 8 N -0.719 5.719 9 C 0.127 3.873 10 C 0.011 3.989 11 N -0.624 5.624 12 C 0.048 3.952 13 C 0.450 3.550 14 O -0.565 6.565 15 N -0.589 5.589 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.148 4.148 25 C -0.152 4.152 26 N -0.715 5.715 27 C 0.705 3.295 28 O -0.581 6.581 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.404 0.596 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.352 0.648 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.095 0.905 46 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.802 2.594 0.632 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.377 5.377 3 C -0.016 4.016 4 C -0.007 4.007 5 H 0.137 0.863 6 C 0.284 3.716 7 O -0.394 6.394 8 N -0.372 5.372 9 C 0.001 3.999 10 C -0.082 4.082 11 N -0.255 5.255 12 C -0.085 4.085 13 C 0.235 3.765 14 O -0.447 6.447 15 N -0.229 5.229 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.705 3.295 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.186 4.186 25 C -0.190 4.190 26 N -0.376 5.376 27 C 0.405 3.595 28 O -0.458 6.458 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.239 0.761 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.172 0.828 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.113 0.887 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -27.649 2.428 0.808 27.767 hybrid contribution 0.384 -1.515 0.952 1.830 sum -27.266 0.913 1.760 27.338 Atomic orbital electron populations 1.21438 0.75241 1.04208 1.01430 1.46986 1.06499 1.05502 1.78746 1.22245 0.86109 0.89165 1.04094 1.21843 0.97269 0.83678 0.97905 0.86343 1.20755 0.79691 0.81771 0.89401 1.90781 1.59592 1.52497 1.36543 1.45968 1.54261 1.18385 1.18547 1.21471 0.95723 0.95646 0.87055 1.21693 0.92948 0.89264 1.04292 1.59939 1.03375 1.57195 1.04979 1.21711 0.91893 0.96707 0.98165 1.19645 0.84813 0.84329 0.87695 1.90566 1.84960 1.45464 1.23700 1.42207 1.09424 1.49194 1.22026 1.19418 0.83616 1.33180 1.07222 0.86267 1.25045 0.95095 0.97772 0.98220 1.69615 0.99993 1.43444 1.38916 0.86681 0.78515 0.80685 0.83576 1.19617 1.20108 1.19458 1.23087 1.03006 1.00148 0.92330 1.23081 0.96887 0.98822 1.00224 1.44850 1.07068 1.06081 1.79622 1.15806 0.81663 0.84671 0.77311 1.90972 1.75732 1.20877 1.58251 0.89415 0.92012 0.91870 0.88526 0.89641 0.76073 0.90830 0.90461 0.82774 0.89236 0.93587 0.79682 0.91563 0.88557 0.87500 0.87535 0.88670 0.72166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.68 11.21 59.84 0.67 1.35 16 2 N -0.64 -5.23 3.36 -186.74 -0.63 -5.86 16 3 C 0.11 0.53 7.33 -3.16 -0.02 0.51 16 4 C 0.10 0.66 4.16 -68.20 -0.28 0.38 16 5 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 6 C 0.50 4.47 6.95 -10.98 -0.08 4.40 16 7 O -0.52 -7.18 16.60 5.56 0.09 -7.08 16 8 N -0.72 -5.00 5.52 -60.30 -0.33 -5.33 16 9 C 0.13 1.12 5.67 -4.04 -0.02 1.10 16 10 C 0.01 0.10 1.72 -131.60 -0.23 -0.12 16 11 N -0.62 -8.20 6.15 -101.22 -0.62 -8.83 16 12 C 0.05 0.73 5.88 -4.98 -0.03 0.70 16 13 C 0.45 9.80 7.83 -10.99 -0.09 9.71 16 14 O -0.56 -14.58 15.89 5.54 0.09 -14.49 16 15 N -0.59 -13.75 5.09 -10.96 -0.06 -13.80 16 16 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 17 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.50 13.96 55.50 0.77 -24.72 16 20 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 24 C -0.15 -1.24 10.10 -26.69 -0.27 -1.51 16 25 C -0.15 -1.09 10.07 -26.69 -0.27 -1.36 16 26 N -0.71 -6.84 5.63 -59.33 -0.33 -7.18 16 27 C 0.71 8.35 8.60 -88.39 -0.76 7.59 16 28 O -0.58 -9.28 17.29 5.30 0.09 -9.19 16 29 H 0.09 0.63 7.52 -51.93 -0.39 0.24 16 30 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.37 7.73 -51.93 -0.40 -0.03 16 34 H 0.40 1.79 8.41 -40.82 -0.34 1.45 16 35 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 37 H 0.35 4.68 8.71 -39.29 -0.34 4.34 16 38 H 0.09 1.26 8.12 -51.93 -0.42 0.84 16 39 H 0.05 0.64 6.82 -51.93 -0.35 0.29 16 40 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 43 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.44 4.04 8.96 -40.82 -0.37 3.67 16 LS Contribution 390.46 15.07 5.88 5.88 Total: -1.00 -39.03 390.46 -7.92 -46.95 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -6.54 Total: 13.98 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -1.62 Total: 15.10 kcal Atomic # 7 Polarization: -64.52 SS G_CDS: -1.20 Total: -65.72 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: 0.27 Total: -30.77 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.03 -7.92 -46.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754521337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.908 kcal (2) G-P(sol) polarization free energy of solvation -39.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds