Wall clock time and date at job start Sat Apr 11 2020 05:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.47051 * 125.41126 * 2 1 4 4 C 1.54106 * 103.86392 * 179.87348 * 3 2 1 5 5 H 1.08992 * 110.46592 * 118.93045 * 4 3 2 6 6 C 1.50704 * 110.75645 * 241.68036 * 4 3 2 7 7 O 1.21278 * 120.00181 * 96.01887 * 6 4 3 8 8 N 1.34775 * 119.99959 * 276.01685 * 6 4 3 9 9 C 1.46493 * 120.00302 * 180.02562 * 8 6 4 10 10 C 1.53002 * 109.47647 * 175.57647 * 9 8 6 11 11 N 1.46895 * 115.55184 * 279.59849 * 10 9 8 12 12 C 1.46899 * 110.99832 * 295.73083 * 11 10 9 13 13 C 1.50699 * 109.47337 * 185.27702 * 12 11 10 14 14 O 1.21296 * 119.99791 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00029 * 179.97438 * 13 12 11 16 16 C 1.37098 * 119.99727 * 180.02562 * 15 13 12 17 17 H 1.07998 * 120.00029 * 0.02562 * 16 15 13 18 18 C 1.38957 * 119.99991 * 180.02562 * 16 15 13 19 19 N 1.31409 * 120.00241 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99817 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47047 * 89.99945 * 20 18 16 22 22 H 1.48498 * 109.47117 * 209.99999 * 20 18 16 23 23 H 1.48502 * 109.47112 * 329.99994 * 20 18 16 24 24 C 1.53000 * 117.49773 * 133.92268 * 10 9 8 25 25 C 1.53006 * 117.49617 * 65.26246 * 10 9 8 26 26 N 1.47048 * 103.85981 * 0.37321 * 4 3 2 27 27 C 1.33950 * 125.40834 * 180.30912 * 2 1 3 28 28 O 1.21580 * 123.04567 * 359.97336 * 27 2 1 29 29 H 1.09001 * 109.47637 * 179.71944 * 1 2 3 30 30 H 1.09007 * 109.47334 * 299.71656 * 1 2 3 31 31 H 1.09001 * 109.47592 * 59.71710 * 1 2 3 32 32 H 1.09005 * 110.55127 * 298.59462 * 3 2 1 33 33 H 1.09001 * 110.54890 * 61.40655 * 3 2 1 34 34 H 0.97005 * 120.00219 * 359.97438 * 8 6 4 35 35 H 1.09002 * 109.46918 * 295.57750 * 9 8 6 36 36 H 1.09003 * 109.47401 * 55.57483 * 9 8 6 37 37 H 1.00909 * 111.00089 * 59.68004 * 11 10 9 38 38 H 1.08999 * 109.47596 * 305.28218 * 12 11 10 39 39 H 1.09006 * 109.47270 * 65.27966 * 12 11 10 40 40 H 0.96999 * 120.00131 * 0.02562 * 15 13 12 41 41 H 0.96996 * 120.00365 * 180.02562 * 19 18 16 42 42 H 1.09000 * 117.50173 * 0.02562 * 24 10 9 43 43 H 1.09008 * 117.49692 * 145.02566 * 24 10 9 44 44 H 1.08998 * 117.49705 * 214.97966 * 25 10 9 45 45 H 1.08998 * 117.49601 * 359.97438 * 25 10 9 46 46 H 0.97004 * 125.41141 * 179.75846 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.3170 1.1985 0.0000 4 6 3.7503 0.6325 0.0033 5 1 4.2878 0.9508 -0.8898 6 6 4.4904 1.0597 1.2447 7 8 4.5387 0.3220 2.2060 8 7 5.0987 2.2617 1.2864 9 6 5.8186 2.6768 2.4929 10 6 6.5039 4.0213 2.2407 11 7 7.7753 3.9568 1.5078 12 6 8.7920 3.2305 2.2804 13 6 10.1132 3.2961 1.5585 14 8 10.1996 3.8899 0.5044 15 7 11.1991 2.6959 2.0848 16 6 12.4012 2.7560 1.4283 17 1 12.4781 3.2847 0.4897 18 6 13.5207 2.1367 1.9706 19 7 14.6731 2.1947 1.3416 20 14 13.3876 1.2216 3.5936 21 1 13.0353 -0.1975 3.3343 22 1 14.6886 1.2864 4.3065 23 1 12.3330 1.8485 4.4303 24 6 6.3631 5.0990 3.3176 25 6 5.6070 5.2361 1.9937 26 7 3.5537 -0.8247 -0.0045 27 6 2.2410 -1.0917 -0.0059 28 8 1.7945 -2.2226 -0.0115 29 1 -0.3634 -1.0276 -0.0050 30 1 -0.3634 0.5094 0.8926 31 1 -0.3634 0.5182 -0.8874 32 1 2.1406 1.7934 -0.8962 33 1 2.1406 1.7934 0.8962 34 1 5.0605 2.8517 0.5174 35 1 5.1150 2.7770 3.3194 36 1 6.5695 1.9277 2.7438 37 1 7.6473 3.5406 0.5975 38 1 8.8933 3.6854 3.2657 39 1 8.4894 2.1891 2.3904 40 1 11.1302 2.2213 2.9280 41 1 15.4545 1.7621 1.7199 42 1 5.7826 4.8500 4.2060 43 1 7.2139 5.7604 3.4821 44 1 5.9606 5.9875 1.2878 45 1 4.5288 5.0773 2.0104 46 1 4.2620 -1.4875 -0.0080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754521337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:46 Heat of formation + Delta-G solvation = -74.329249 kcal Electronic energy + Delta-G solvation = -29179.370535 eV Core-core repulsion = 24911.530342 eV Total energy + Delta-G solvation = -4267.840193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.44045 -40.77895 -40.22758 -39.10084 -37.41937 -36.06536 -35.27291 -35.10401 -34.13816 -33.68859 -30.83361 -28.72256 -28.38609 -27.39701 -25.70797 -24.68025 -23.29059 -21.66851 -21.60643 -21.29662 -20.69565 -20.25369 -19.02308 -18.70599 -17.85718 -17.58576 -17.05701 -17.04217 -16.77089 -16.59626 -16.23302 -15.94960 -15.66472 -15.32542 -15.19676 -15.05613 -14.92995 -14.69011 -14.50575 -14.41671 -14.04206 -14.02994 -13.55345 -13.37047 -13.21640 -13.09267 -12.94857 -12.81447 -12.43246 -12.23666 -12.00565 -11.62186 -11.53761 -11.52278 -11.42582 -10.94127 -10.45355 -10.41597 -10.26236 -10.19603 -9.61432 -9.44858 -8.42878 -6.03267 1.27455 1.28480 1.33143 1.41874 1.60035 1.77728 1.93754 2.10578 2.20603 2.57269 2.85960 2.97657 3.13629 3.25995 3.31222 3.54946 3.60282 3.88360 3.96740 4.10659 4.12990 4.15601 4.30767 4.47866 4.48338 4.54750 4.63433 4.68855 4.72897 4.84488 4.86979 4.89254 4.94168 5.15199 5.28002 5.42674 5.51005 5.60132 5.88126 5.95911 6.00662 6.30493 6.36895 6.46501 6.57679 6.86620 7.10550 7.38309 7.40003 7.94087 8.74491 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.002336 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.355104 B =11984.946734 C =13185.403400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.637 5.637 3 C 0.109 3.891 4 C 0.105 3.895 5 H 0.157 0.843 6 C 0.503 3.497 7 O -0.574 6.574 8 N -0.702 5.702 9 C 0.134 3.866 10 C 0.004 3.996 11 N -0.638 5.638 12 C 0.064 3.936 13 C 0.450 3.550 14 O -0.610 6.610 15 N -0.593 5.593 16 C -0.326 4.326 17 H 0.058 0.942 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.961 3.039 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.232 1.232 24 C -0.151 4.151 25 C -0.129 4.129 26 N -0.719 5.719 27 C 0.690 3.310 28 O -0.637 6.637 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.420 0.580 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.349 0.651 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.388 0.612 41 H 0.279 0.721 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.125 0.875 46 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.473 3.705 2.273 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.376 5.376 3 C -0.014 4.014 4 C -0.005 4.005 5 H 0.174 0.826 6 C 0.287 3.713 7 O -0.452 6.452 8 N -0.355 5.355 9 C 0.008 3.992 10 C -0.088 4.088 11 N -0.269 5.269 12 C -0.068 4.068 13 C 0.238 3.762 14 O -0.494 6.494 15 N -0.235 5.235 16 C -0.455 4.455 17 H 0.076 0.924 18 C -0.213 4.213 19 N -0.573 5.573 20 Si 0.781 3.219 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.156 1.156 24 C -0.189 4.189 25 C -0.167 4.167 26 N -0.379 5.379 27 C 0.391 3.609 28 O -0.519 6.519 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.158 0.842 33 H 0.114 0.886 34 H 0.258 0.742 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.169 0.831 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.223 0.777 41 H 0.088 0.912 42 H 0.134 0.866 43 H 0.109 0.891 44 H 0.117 0.883 45 H 0.143 0.857 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -30.351 3.641 2.432 30.666 hybrid contribution 1.191 -1.705 0.326 2.105 sum -29.160 1.937 2.758 29.354 Atomic orbital electron populations 1.21631 0.74058 1.03445 1.03671 1.47198 1.07376 1.05562 1.77439 1.22594 0.84040 0.88048 1.06731 1.22165 0.98672 0.81774 0.97861 0.82615 1.21189 0.79200 0.81487 0.89413 1.90768 1.61741 1.54091 1.38630 1.45826 1.52993 1.18034 1.18625 1.21296 0.95410 0.94553 0.87919 1.21650 0.91777 0.90113 1.05254 1.59899 1.04962 1.56871 1.05158 1.21542 0.88600 0.98657 0.97993 1.20924 0.86465 0.81792 0.87002 1.90543 1.86092 1.46812 1.25950 1.42068 1.08435 1.50266 1.22682 1.18999 0.86328 1.33990 1.06216 0.92373 1.26070 0.93912 0.98308 1.03016 1.69790 1.01196 1.44827 1.41505 0.85421 0.79634 0.79229 0.77620 1.18469 1.19935 1.15563 1.23173 1.03060 0.99197 0.93502 1.23165 0.98064 0.96603 0.98865 1.44929 1.06358 1.07724 1.78847 1.16195 0.82547 0.84814 0.77391 1.90913 1.76834 1.23298 1.60884 0.91753 0.90312 0.88973 0.84244 0.88554 0.74232 0.90025 0.92701 0.83092 0.87180 0.91470 0.77678 0.91157 0.86615 0.89127 0.88290 0.85688 0.72587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.09 11.21 127.77 1.43 2.52 16 2 N -0.64 -9.20 3.36 -863.44 -2.90 -12.09 16 3 C 0.11 0.64 7.33 86.65 0.63 1.27 16 4 C 0.10 1.04 4.16 44.52 0.19 1.22 16 5 H 0.16 0.40 8.14 -2.39 -0.02 0.38 16 6 C 0.50 7.77 6.95 87.66 0.61 8.38 16 7 O -0.57 -15.26 16.60 -3.02 -0.05 -15.31 16 8 N -0.70 -7.44 5.52 -463.07 -2.55 -9.99 16 9 C 0.13 1.97 5.67 86.38 0.49 2.46 16 10 C 0.00 0.07 1.72 3.53 0.01 0.07 16 11 N -0.64 -15.50 6.15 -474.14 -2.92 -18.42 16 12 C 0.06 1.84 5.88 85.56 0.50 2.35 16 13 C 0.45 19.59 7.83 87.66 0.69 20.27 16 14 O -0.61 -32.38 15.89 -3.08 -0.05 -32.43 16 15 N -0.59 -27.58 5.09 -306.98 -1.56 -29.14 16 16 C -0.33 -18.90 10.16 84.04 0.85 -18.05 16 17 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 18 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 19 N -0.93 -55.98 13.96 21.66 0.30 -55.68 16 20 Si 0.96 39.00 27.74 68.60 1.90 40.90 16 21 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 23 H -0.23 -7.97 6.52 99.48 0.65 -7.32 16 24 C -0.15 -2.03 10.10 30.62 0.31 -1.73 16 25 C -0.13 -1.35 10.07 30.62 0.31 -1.04 16 26 N -0.72 -13.23 5.63 -460.35 -2.59 -15.83 16 27 C 0.69 16.21 8.60 179.57 1.55 17.75 16 28 O -0.64 -21.27 17.29 -3.97 -0.07 -21.34 16 29 H 0.06 0.94 7.52 -2.39 -0.02 0.92 16 30 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.14 -0.28 8.14 -2.38 -0.02 -0.30 16 33 H 0.10 0.41 7.73 -2.39 -0.02 0.40 16 34 H 0.42 1.96 8.41 -92.70 -0.78 1.18 16 35 H 0.08 1.13 7.94 -2.39 -0.02 1.11 16 36 H 0.05 1.09 6.58 -2.39 -0.02 1.08 16 37 H 0.35 8.71 8.71 -89.69 -0.78 7.93 16 38 H 0.11 2.76 8.12 -2.39 -0.02 2.74 16 39 H 0.07 1.69 6.82 -2.38 -0.02 1.68 16 40 H 0.39 15.15 5.76 -92.71 -0.53 14.62 16 41 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.12 1.12 8.08 -2.39 -0.02 1.10 16 43 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.43 8.13 8.96 -92.71 -0.83 7.30 16 Total: -1.00 -94.03 390.46 -4.37 -98.40 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -1.92 Total: 35.75 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 8.03 Total: 35.17 kcal Atomic # 7 Polarization: -128.93 SS G_CDS: -12.22 Total: -141.15 kcal Atomic # 8 Polarization: -68.91 SS G_CDS: -0.17 Total: -69.08 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -94.03 -4.37 -98.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754521337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.075 kcal (2) G-P(sol) polarization free energy of solvation -94.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds