Wall clock time and date at job start Sat Apr 11 2020 05:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.52998 * 109.46931 * 269.99325 * 3 2 1 5 5 H 1.08995 * 109.47486 * 305.00480 * 4 3 2 6 6 O 1.42899 * 109.46941 * 65.00405 * 4 3 2 7 7 C 1.53005 * 109.47152 * 184.99996 * 4 3 2 8 8 N 1.46898 * 109.46855 * 179.97438 * 7 4 3 9 9 C 1.46904 * 110.99715 * 179.97438 * 8 7 4 10 10 C 1.50701 * 109.47109 * 180.02562 * 9 8 7 11 11 O 1.21300 * 120.00090 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00176 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99802 * 180.02562 * 12 10 9 14 14 H 1.07990 * 120.00323 * 359.97438 * 13 12 10 15 15 C 1.38951 * 119.99341 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99515 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00455 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47293 * 89.99716 * 17 15 13 19 19 H 1.48500 * 109.47369 * 210.00003 * 17 15 13 20 20 H 1.48503 * 109.47101 * 330.00529 * 17 15 13 21 21 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 22 22 O 1.21274 * 120.00135 * 180.27973 * 21 2 1 23 23 C 1.50706 * 119.99766 * 0.02562 * 21 2 1 24 24 N 1.46500 * 109.46949 * 179.97438 * 23 21 2 25 25 C 1.34949 * 126.04018 * 124.99955 * 24 23 21 26 26 C 1.35309 * 107.74732 * 179.97438 * 25 24 23 27 27 C 1.39876 * 107.92478 * 0.02562 * 26 25 24 28 28 N 1.30840 * 108.19498 * 359.73989 * 27 26 25 29 29 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 30 30 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 31 31 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 32 32 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 33 33 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 34 34 H 0.96701 * 114.00214 * 59.99749 * 6 4 3 35 35 H 1.08995 * 109.47320 * 300.00585 * 7 4 3 36 36 H 1.09007 * 109.46455 * 60.00534 * 7 4 3 37 37 H 1.00907 * 110.99829 * 56.05338 * 8 7 4 38 38 H 1.08996 * 109.47439 * 300.00554 * 9 8 7 39 39 H 1.09004 * 109.46602 * 60.00813 * 9 8 7 40 40 H 0.96998 * 119.99873 * 359.97438 * 12 10 9 41 41 H 0.97006 * 120.00047 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.47161 * 299.99737 * 23 21 2 43 43 H 1.09001 * 109.46740 * 59.99879 * 23 21 2 44 44 H 1.07997 * 126.12281 * 359.96039 * 25 24 23 45 45 H 1.08004 * 126.04313 * 180.02562 * 26 25 24 46 46 H 1.07995 * 125.89861 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2062 1.9934 -2.0814 7 6 3.3239 2.9680 -1.4444 8 7 3.5693 3.3915 -2.8294 9 6 4.4041 4.5996 -2.8704 10 6 4.6334 5.0034 -4.3040 11 8 4.1494 4.3489 -5.2033 12 7 5.3771 6.0912 -4.5871 13 6 5.5852 6.4588 -5.8914 14 1 5.1536 5.8765 -6.6920 15 6 6.3515 7.5806 -6.1831 16 7 6.5514 7.9327 -7.4333 17 14 7.0974 8.5882 -4.7984 18 1 8.4458 8.0587 -4.4716 19 1 7.2123 10.0062 -5.2242 20 1 6.2272 8.5006 -3.5982 21 6 2.1389 -1.1672 0.0005 22 8 3.3516 -1.1673 0.0056 23 6 1.3853 -2.4723 0.0005 24 7 2.3372 -3.5859 0.0005 25 6 2.3774 -4.5961 0.8944 26 6 3.3970 -5.4146 0.5462 27 6 4.0011 -4.8863 -0.5995 28 7 3.3633 -3.7929 -0.9304 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 0.6956 2.6948 -1.6544 35 1 2.8122 3.7653 -0.9054 36 1 4.2747 2.7519 -0.9570 37 1 2.7009 3.5356 -3.3227 38 1 3.8993 5.4082 -2.3418 39 1 5.3622 4.3955 -2.3924 40 1 5.7644 6.6144 -3.8680 41 1 7.0867 8.7156 -7.6371 42 1 0.7583 -2.5298 0.8903 43 1 0.7590 -2.5301 -0.8897 44 1 1.7146 -4.7275 1.7369 45 1 3.6924 -6.3166 1.0617 46 1 4.8455 -5.3100 -1.1228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755772744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:36 Heat of formation + Delta-G solvation = -14.947428 kcal Electronic energy + Delta-G solvation = -28553.272262 eV Core-core repulsion = 24288.007059 eV Total energy + Delta-G solvation = -4265.265204 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48534 -40.23225 -38.60944 -37.91755 -35.71487 -34.78556 -33.81520 -33.71684 -31.64721 -31.00657 -30.29824 -28.40107 -27.65927 -26.49579 -24.83274 -23.26835 -21.91302 -21.45298 -21.34681 -19.69781 -19.36795 -18.35920 -17.85294 -17.59498 -17.02320 -16.58961 -16.15809 -15.89128 -15.61488 -15.22513 -15.03330 -14.74781 -14.49799 -14.37668 -13.97387 -13.66410 -13.60688 -13.47872 -13.29419 -13.08152 -13.03894 -12.93797 -12.68516 -12.61803 -12.19567 -11.97807 -11.85799 -11.70624 -11.27279 -11.12302 -10.85587 -10.64174 -10.57956 -10.35742 -9.95305 -9.60027 -9.54939 -9.01461 -8.87155 -8.55074 -8.17146 -8.11808 -6.28646 -3.79947 1.57886 2.02732 2.13505 2.58352 2.66791 3.03351 3.08578 3.16141 3.76346 3.81887 3.94641 4.11431 4.12161 4.23758 4.43951 4.48463 4.60976 4.66000 4.72606 4.79994 4.87701 4.90131 5.02232 5.13457 5.20469 5.24744 5.28502 5.32082 5.49199 5.54306 5.61117 5.74358 5.80973 5.85052 5.95784 6.05073 6.38872 6.61189 6.84664 7.07665 7.41295 7.48061 7.60399 7.63852 7.71098 8.17318 8.62530 8.97680 9.44926 9.85687 10.84563 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.001803 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.636480 B =15529.492993 C =16245.360690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.088 3.912 4 C 0.094 3.906 5 H 0.113 0.887 6 O -0.551 6.551 7 C 0.032 3.968 8 N -0.662 5.662 9 C 0.048 3.952 10 C 0.450 3.550 11 O -0.562 6.562 12 N -0.591 5.591 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.881 3.119 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.270 1.270 21 C 0.499 3.501 22 O -0.504 6.504 23 C 0.119 3.881 24 N -0.367 5.367 25 C 0.048 3.952 26 C -0.270 4.270 27 C 0.040 3.960 28 N -0.263 5.263 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.366 0.634 35 H 0.029 0.971 36 H 0.081 0.919 37 H 0.357 0.643 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.123 0.877 43 H 0.115 0.885 44 H 0.172 0.828 45 H 0.147 0.853 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.156 -19.761 25.584 35.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.343 5.343 3 C -0.036 4.036 4 C 0.034 3.966 5 H 0.131 0.869 6 O -0.355 6.355 7 C -0.099 4.099 8 N -0.296 5.296 9 C -0.085 4.085 10 C 0.235 3.765 11 O -0.443 6.443 12 N -0.231 5.231 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.162 4.162 16 N -0.522 5.522 17 Si 0.707 3.293 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.284 3.716 22 O -0.377 6.377 23 C -0.006 4.006 24 N -0.150 5.150 25 C -0.097 4.097 26 C -0.299 4.299 27 C -0.147 4.147 28 N -0.083 5.083 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.212 0.788 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.178 0.822 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.190 0.810 45 H 0.165 0.835 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.178 -19.881 23.493 33.885 hybrid contribution -0.109 1.501 2.346 2.787 sum -14.287 -18.380 25.839 34.779 Atomic orbital electron populations 1.21911 0.78921 1.04370 1.01571 1.47647 1.07181 1.05420 1.74083 1.22180 0.98714 0.84784 0.97888 1.22436 0.84359 0.97466 0.92345 0.86901 1.86719 1.32404 1.59226 1.57121 1.22561 1.00221 0.95959 0.91173 1.59943 1.23192 1.34395 1.12104 1.21720 0.98819 0.91340 0.96581 1.19706 0.83894 0.83023 0.89849 1.90582 1.52456 1.53721 1.47563 1.42201 1.47306 1.25425 1.08173 1.19443 1.30411 1.10688 0.82780 0.86272 1.25041 0.97505 0.97186 0.96491 1.69627 1.39097 1.26458 1.16999 0.86658 0.80105 0.80751 0.81763 1.19593 1.20208 1.19603 1.20545 0.88508 0.85133 0.77405 1.90819 1.13249 1.86545 1.47043 1.21489 0.89808 0.83399 1.05949 1.48129 1.25913 1.19017 1.21911 1.22509 1.00933 0.90075 0.96156 1.21509 1.01245 1.04897 1.02251 1.23981 1.00228 0.93480 0.97038 1.77583 1.00152 1.17896 1.12698 0.92459 0.89835 0.91069 0.89941 0.88680 0.78791 0.95308 0.90036 0.82231 0.93907 0.89505 0.79726 0.91641 0.85928 0.86728 0.81045 0.83478 0.79974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.27 10.06 59.85 0.60 0.87 16 2 N -0.61 -4.52 2.84 -181.57 -0.52 -5.03 16 3 C 0.09 0.69 5.07 -4.04 -0.02 0.67 16 4 C 0.09 1.00 3.48 -26.73 -0.09 0.91 16 5 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 6 O -0.55 -5.55 11.50 -35.23 -0.41 -5.96 16 7 C 0.03 0.36 5.39 -3.82 -0.02 0.34 16 8 N -0.66 -10.81 6.13 -115.05 -0.70 -11.51 16 9 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 10 C 0.45 10.60 7.82 -10.98 -0.09 10.51 16 11 O -0.56 -15.75 15.78 5.54 0.09 -15.66 16 12 N -0.59 -14.47 5.09 -10.96 -0.06 -14.53 16 13 C -0.30 -8.82 10.16 -14.93 -0.15 -8.98 16 14 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 15 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 16 N -0.88 -26.18 13.96 55.50 0.77 -25.40 16 17 Si 0.88 19.68 27.74 -169.99 -4.71 14.97 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 21 C 0.50 5.03 7.70 -10.98 -0.08 4.95 16 22 O -0.50 -7.61 15.30 5.56 0.09 -7.53 16 23 C 0.12 0.80 5.54 -5.19 -0.03 0.78 16 24 N -0.37 -3.66 3.39 -62.54 -0.21 -3.88 16 25 C 0.05 0.36 11.45 -17.23 -0.20 0.17 16 26 C -0.27 -2.24 10.80 -40.01 -0.43 -2.68 16 27 C 0.04 0.42 12.03 -17.36 -0.21 0.21 16 28 N -0.26 -3.50 11.66 30.63 0.36 -3.15 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 30 H 0.08 0.29 7.11 -51.93 -0.37 -0.08 16 31 H 0.07 0.17 6.44 -51.93 -0.33 -0.17 16 32 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 33 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 34 H 0.37 2.18 9.04 45.56 0.41 2.59 16 35 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.36 6.13 7.82 -39.29 -0.31 5.83 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.12 0.29 8.04 -51.93 -0.42 -0.12 16 43 H 0.11 0.61 7.40 -51.93 -0.38 0.23 16 44 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 46 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 391.11 15.07 5.89 5.89 Total: -1.00 -41.50 391.11 -6.06 -47.56 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.80 Total: 14.65 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -0.85 Total: 9.58 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.36 Total: -63.50 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.23 Total: -29.14 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -41.50 -6.06 -47.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755772744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.610 kcal (2) G-P(sol) polarization free energy of solvation -41.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds