Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99880 * 2 1 4 4 C 1.52998 * 109.46931 * 269.99325 * 3 2 1 5 5 H 1.08995 * 109.47486 * 305.00480 * 4 3 2 6 6 O 1.42899 * 109.46941 * 65.00405 * 4 3 2 7 7 C 1.53005 * 109.47152 * 184.99996 * 4 3 2 8 8 N 1.46898 * 109.46855 * 179.97438 * 7 4 3 9 9 C 1.46904 * 110.99715 * 179.97438 * 8 7 4 10 10 C 1.50701 * 109.47109 * 180.02562 * 9 8 7 11 11 O 1.21300 * 120.00090 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00176 * 180.02562 * 10 9 8 13 13 C 1.37098 * 119.99802 * 180.02562 * 12 10 9 14 14 H 1.07990 * 120.00323 * 359.97438 * 13 12 10 15 15 C 1.38951 * 119.99341 * 179.97438 * 13 12 10 16 16 N 1.31412 * 119.99515 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00455 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47293 * 89.99716 * 17 15 13 19 19 H 1.48500 * 109.47369 * 210.00003 * 17 15 13 20 20 H 1.48503 * 109.47101 * 330.00529 * 17 15 13 21 21 C 1.34777 * 119.99854 * 179.97438 * 2 1 3 22 22 O 1.21274 * 120.00135 * 180.27973 * 21 2 1 23 23 C 1.50706 * 119.99766 * 0.02562 * 21 2 1 24 24 N 1.46500 * 109.46949 * 179.97438 * 23 21 2 25 25 C 1.34949 * 126.04018 * 124.99955 * 24 23 21 26 26 C 1.35309 * 107.74732 * 179.97438 * 25 24 23 27 27 C 1.39876 * 107.92478 * 0.02562 * 26 25 24 28 28 N 1.30840 * 108.19498 * 359.73989 * 27 26 25 29 29 H 1.09002 * 109.47335 * 270.00735 * 1 2 3 30 30 H 1.09001 * 109.47076 * 30.00140 * 1 2 3 31 31 H 1.08996 * 109.47068 * 150.00167 * 1 2 3 32 32 H 1.08997 * 109.47682 * 29.99532 * 3 2 1 33 33 H 1.09004 * 109.47271 * 149.99629 * 3 2 1 34 34 H 0.96701 * 114.00214 * 59.99749 * 6 4 3 35 35 H 1.08995 * 109.47320 * 300.00585 * 7 4 3 36 36 H 1.09007 * 109.46455 * 60.00534 * 7 4 3 37 37 H 1.00907 * 110.99829 * 56.05338 * 8 7 4 38 38 H 1.08996 * 109.47439 * 300.00554 * 9 8 7 39 39 H 1.09004 * 109.46602 * 60.00813 * 9 8 7 40 40 H 0.96998 * 119.99873 * 359.97438 * 12 10 9 41 41 H 0.97006 * 120.00047 * 180.02562 * 16 15 13 42 42 H 1.09000 * 109.47161 * 299.99737 * 23 21 2 43 43 H 1.09001 * 109.46740 * 59.99879 * 23 21 2 44 44 H 1.07997 * 126.12281 * 359.96039 * 25 24 23 45 45 H 1.08004 * 126.04313 * 180.02562 * 26 25 24 46 46 H 1.07995 * 125.89861 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.9643 0.9130 -1.9815 6 8 1.2062 1.9934 -2.0814 7 6 3.3239 2.9680 -1.4444 8 7 3.5693 3.3915 -2.8294 9 6 4.4041 4.5996 -2.8704 10 6 4.6334 5.0034 -4.3040 11 8 4.1494 4.3489 -5.2033 12 7 5.3771 6.0912 -4.5871 13 6 5.5852 6.4588 -5.8914 14 1 5.1536 5.8765 -6.6920 15 6 6.3515 7.5806 -6.1831 16 7 6.5514 7.9327 -7.4333 17 14 7.0974 8.5882 -4.7984 18 1 8.4458 8.0587 -4.4716 19 1 7.2123 10.0062 -5.2242 20 1 6.2272 8.5006 -3.5982 21 6 2.1389 -1.1672 0.0005 22 8 3.3516 -1.1673 0.0056 23 6 1.3853 -2.4723 0.0005 24 7 2.3372 -3.5859 0.0005 25 6 2.3774 -4.5961 0.8944 26 6 3.3970 -5.4146 0.5462 27 6 4.0011 -4.8863 -0.5995 28 7 3.3633 -3.7929 -0.9304 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 0.6956 2.6948 -1.6544 35 1 2.8122 3.7653 -0.9054 36 1 4.2747 2.7519 -0.9570 37 1 2.7009 3.5356 -3.3227 38 1 3.8993 5.4082 -2.3418 39 1 5.3622 4.3955 -2.3924 40 1 5.7644 6.6144 -3.8680 41 1 7.0867 8.7156 -7.6371 42 1 0.7583 -2.5298 0.8903 43 1 0.7590 -2.5301 -0.8897 44 1 1.7146 -4.7275 1.7369 45 1 3.6924 -6.3166 1.0617 46 1 4.8455 -5.3100 -1.1228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755772744.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -53.160603 kcal Electronic energy + Delta-G solvation = -28554.929310 eV Core-core repulsion = 24288.007059 eV Total energy + Delta-G solvation = -4266.922251 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.12383 -40.92554 -40.34239 -38.93649 -36.57667 -36.11143 -35.58707 -34.33988 -33.77632 -31.83862 -30.95925 -29.40808 -28.34502 -27.44131 -26.18816 -24.59171 -22.80033 -22.16175 -21.93475 -21.33152 -20.34017 -20.30524 -18.50400 -18.22033 -18.09387 -17.38693 -17.32849 -16.95362 -16.83661 -16.43492 -16.09381 -15.95412 -15.51431 -15.16988 -15.06008 -14.97192 -14.61140 -14.48969 -14.39801 -14.13578 -13.96849 -13.67255 -13.63496 -13.37898 -13.25079 -13.17788 -13.01516 -12.78691 -12.59524 -12.43527 -12.10661 -11.99151 -11.55702 -11.54461 -11.41171 -11.11948 -10.48458 -10.30862 -10.27817 -9.61531 -9.49910 -9.33567 -8.43516 -6.05082 0.96862 1.28138 1.34711 1.43348 1.44796 1.51917 1.91854 1.99499 2.03309 2.21499 2.67886 3.12248 3.27061 3.36107 3.51738 3.70459 3.88228 3.99830 4.05267 4.07016 4.09333 4.16593 4.23122 4.33191 4.36812 4.41303 4.48897 4.63493 4.70619 4.72100 4.80537 4.91986 5.00921 5.06018 5.16285 5.44041 5.50179 5.72566 5.87061 6.01229 6.09969 6.30271 6.36909 6.57224 6.80664 6.85074 6.86762 7.06632 7.36315 7.93465 8.74272 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.001803 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.636480 B =15529.492993 C =16245.360690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.094 3.906 4 C 0.106 3.894 5 H 0.060 0.940 6 O -0.564 6.564 7 C 0.035 3.965 8 N -0.692 5.692 9 C 0.064 3.936 10 C 0.445 3.555 11 O -0.617 6.617 12 N -0.589 5.589 13 C -0.332 4.332 14 H 0.053 0.947 15 C -0.016 4.016 16 N -0.934 5.934 17 Si 0.968 3.032 18 H -0.259 1.259 19 H -0.273 1.273 20 H -0.229 1.229 21 C 0.488 3.512 22 O -0.568 6.568 23 C 0.116 3.884 24 N -0.375 5.375 25 C 0.057 3.943 26 C -0.285 4.285 27 C 0.023 3.977 28 N -0.331 5.331 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.077 0.923 34 H 0.387 0.613 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.349 0.651 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.391 0.609 41 H 0.280 0.720 42 H 0.174 0.826 43 H 0.127 0.873 44 H 0.220 0.780 45 H 0.170 0.830 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.900 -18.853 30.702 39.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.337 5.337 3 C -0.030 4.030 4 C 0.046 3.954 5 H 0.078 0.922 6 O -0.371 6.371 7 C -0.094 4.094 8 N -0.326 5.326 9 C -0.069 4.069 10 C 0.233 3.767 11 O -0.501 6.501 12 N -0.231 5.231 13 C -0.461 4.461 14 H 0.071 0.929 15 C -0.215 4.215 16 N -0.574 5.574 17 Si 0.788 3.212 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.152 1.152 21 C 0.275 3.725 22 O -0.446 6.446 23 C -0.008 4.008 24 N -0.159 5.159 25 C -0.087 4.087 26 C -0.314 4.314 27 C -0.163 4.163 28 N -0.152 5.152 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.236 0.764 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.168 0.832 38 H 0.101 0.899 39 H 0.128 0.872 40 H 0.226 0.774 41 H 0.089 0.911 42 H 0.192 0.808 43 H 0.144 0.856 44 H 0.236 0.764 45 H 0.188 0.812 46 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.984 -18.966 28.649 37.894 hybrid contribution 0.304 1.147 0.652 1.354 sum -15.680 -17.820 29.301 37.709 Atomic orbital electron populations 1.22232 0.76159 1.05304 1.03778 1.47797 1.08836 1.04571 1.72457 1.22104 0.99055 0.86063 0.95770 1.22100 0.84266 0.95702 0.93369 0.92174 1.86680 1.32233 1.60330 1.57900 1.22626 1.00948 0.97132 0.88720 1.59901 1.23039 1.34340 1.15296 1.21634 1.00756 0.92994 0.91477 1.21054 0.81703 0.81523 0.92426 1.90557 1.54123 1.55190 1.50269 1.42010 1.47954 1.26250 1.06854 1.19014 1.32051 1.11406 0.83667 0.92925 1.26168 0.97101 0.97979 1.00214 1.69813 1.39905 1.27383 1.20330 0.85322 0.79679 0.77846 0.78381 1.18313 1.19770 1.15231 1.21226 0.88061 0.86819 0.76365 1.90789 1.16016 1.87541 1.50223 1.21861 0.89177 0.80869 1.08907 1.48381 1.25621 1.20141 1.21730 1.23296 1.00732 0.88544 0.96162 1.21890 1.01589 1.06085 1.01833 1.24379 1.00572 0.93242 0.98129 1.77481 1.02555 1.19658 1.15504 0.89461 0.89432 0.89793 0.85822 0.90471 0.76389 0.91385 0.90026 0.83171 0.89858 0.87172 0.77371 0.91072 0.80825 0.85555 0.76387 0.81216 0.79065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.23 10.06 127.77 1.29 1.52 16 2 N -0.60 -7.86 2.84 -846.76 -2.40 -10.26 16 3 C 0.09 1.30 5.07 86.38 0.44 1.74 16 4 C 0.11 2.20 3.48 30.60 0.11 2.30 16 5 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 6 O -0.56 -10.62 11.50 -148.98 -1.71 -12.33 16 7 C 0.04 0.73 5.39 86.31 0.47 1.20 16 8 N -0.69 -21.96 6.13 -517.91 -3.17 -25.13 16 9 C 0.06 2.03 6.17 85.56 0.53 2.55 16 10 C 0.44 21.10 7.82 87.66 0.69 21.79 16 11 O -0.62 -36.30 15.78 -3.09 -0.05 -36.35 16 12 N -0.59 -28.71 5.09 -306.98 -1.56 -30.27 16 13 C -0.33 -20.08 10.16 84.04 0.85 -19.23 16 14 H 0.05 3.80 7.39 -2.92 -0.02 3.78 16 15 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 16 N -0.93 -57.40 13.96 21.66 0.30 -57.09 16 17 Si 0.97 39.38 27.74 68.60 1.90 41.29 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 21 C 0.49 9.63 7.70 87.66 0.68 10.30 16 22 O -0.57 -18.05 15.30 -3.01 -0.05 -18.10 16 23 C 0.12 1.35 5.54 85.63 0.47 1.83 16 24 N -0.38 -7.24 3.39 -351.79 -1.19 -8.43 16 25 C 0.06 0.75 11.45 83.54 0.96 1.71 16 26 C -0.28 -4.51 10.80 21.99 0.24 -4.28 16 27 C 0.02 0.51 12.03 85.24 1.03 1.54 16 28 N -0.33 -9.30 11.66 -57.02 -0.66 -9.97 16 29 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 30 H 0.09 0.28 7.11 -2.39 -0.02 0.26 16 31 H 0.08 0.10 6.44 -2.39 -0.02 0.09 16 32 H 0.12 0.69 8.07 -2.39 -0.02 0.67 16 33 H 0.08 1.40 7.42 -2.38 -0.02 1.38 16 34 H 0.39 3.46 9.04 -74.06 -0.67 2.79 16 35 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.35 11.91 7.82 -89.69 -0.70 11.21 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.11 3.05 8.14 -2.38 -0.02 3.03 16 40 H 0.39 15.60 5.76 -92.71 -0.53 15.07 16 41 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 42 H 0.17 0.07 8.04 -2.39 -0.02 0.05 16 43 H 0.13 1.14 7.40 -2.39 -0.02 1.12 16 44 H 0.22 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.19 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -103.34 391.11 -1.33 -104.67 By element: Atomic # 1 Polarization: 40.38 SS G_CDS: -0.93 Total: 39.45 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 8.20 Total: 22.53 kcal Atomic # 7 Polarization: -132.46 SS G_CDS: -8.69 Total: -141.16 kcal Atomic # 8 Polarization: -64.97 SS G_CDS: -1.81 Total: -66.77 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 1.90 Total: 41.29 kcal Total: -103.34 -1.33 -104.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755772744.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.513 kcal (2) G-P(sol) polarization free energy of solvation -103.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds