Wall clock time and date at job start Sat Apr 11 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99964 * 2 1 4 4 N 1.46897 * 109.47356 * 124.99703 * 3 2 1 5 5 C 1.46962 * 110.99850 * 169.99624 * 4 3 2 6 6 C 1.53053 * 109.36296 * 176.81126 * 5 4 3 7 7 N 1.46952 * 109.36321 * 58.40163 * 6 5 4 8 8 C 1.46907 * 110.99923 * 176.81145 * 7 6 5 9 9 H 1.09002 * 110.88292 * 54.19288 * 8 7 6 10 10 C 1.55155 * 111.00369 * 290.26863 * 8 7 6 11 11 C 1.54316 * 102.94294 * 206.42274 * 10 8 7 12 12 N 1.47025 * 107.27199 * 22.19519 * 11 10 8 13 13 C 1.34779 * 125.64778 * 181.02686 * 12 11 10 14 14 O 1.21289 * 119.99424 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00229 * 0.03672 * 13 12 11 16 16 S 1.80992 * 109.47089 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00049 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99658 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00042 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47283 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.46960 * 210.00256 * 21 19 17 24 24 H 1.48500 * 109.46957 * 329.99919 * 21 19 17 25 25 C 1.47422 * 108.70216 * 1.05574 * 12 11 10 26 26 C 1.46957 * 110.88383 * 300.68008 * 7 6 5 27 27 C 1.46960 * 111.00196 * 46.20082 * 4 3 2 28 28 H 1.07995 * 119.99458 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99902 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47310 * 4.99272 * 3 2 1 32 32 H 1.09008 * 109.46611 * 244.99641 * 3 2 1 33 33 H 1.09001 * 109.48644 * 56.84588 * 5 4 3 34 34 H 1.08993 * 109.49022 * 296.78141 * 5 4 3 35 35 H 1.08997 * 109.48743 * 178.37042 * 6 5 4 36 36 H 1.09003 * 109.48776 * 298.43807 * 6 5 4 37 37 H 1.08992 * 110.72206 * 324.78887 * 10 8 7 38 38 H 1.08998 * 110.71640 * 88.05895 * 10 8 7 39 39 H 1.09003 * 109.88489 * 262.77912 * 11 10 8 40 40 H 1.09000 * 110.01353 * 141.68612 * 11 10 8 41 41 H 1.08997 * 109.47037 * 300.00438 * 15 13 12 42 42 H 1.08993 * 109.46781 * 60.00038 * 15 13 12 43 43 H 0.97002 * 119.99478 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.36827 * 217.02978 * 25 12 11 45 45 H 1.09005 * 110.45654 * 94.75657 * 25 12 11 46 46 H 1.08997 * 109.49224 * 179.29129 * 26 7 6 47 47 H 1.09002 * 109.48775 * 299.35279 * 26 7 6 48 48 H 1.08997 * 109.49033 * 63.21295 * 27 4 3 49 49 H 1.09001 * 109.49978 * 303.16939 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.9129 2.4765 1.0356 6 6 4.8130 2.5142 2.2729 7 7 5.5594 1.2521 2.3710 8 6 6.4922 1.2791 3.5056 9 1 5.9721 1.5290 4.4304 10 6 7.6618 2.2636 3.2408 11 6 8.8022 1.6862 4.1053 12 7 8.4988 0.2663 4.3363 13 6 9.2446 -0.5878 5.0650 14 8 8.8968 -1.7432 5.1882 15 6 10.5103 -0.1072 5.7268 16 16 11.2801 -1.4779 6.6237 17 6 12.6948 -0.6578 7.2802 18 1 12.8565 0.3896 7.0725 19 6 13.6007 -1.3577 8.0651 20 7 13.4027 -2.6339 8.3194 21 14 15.1000 -0.4881 8.7616 22 1 14.7678 0.0826 10.0917 23 1 16.2140 -1.4597 8.9041 24 1 15.5102 0.6040 7.8427 25 6 7.2443 -0.0687 3.6383 26 6 4.6428 0.1077 2.4699 27 6 3.7428 0.0700 1.2327 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4025 -0.9314 33 1 3.3367 3.3999 0.9767 34 1 4.5278 2.3736 0.1415 35 1 5.5132 3.3452 2.1880 36 1 4.1999 2.6443 3.1647 37 1 7.9376 2.2601 2.1863 38 1 7.4006 3.2697 3.5688 39 1 8.8496 2.2148 5.0575 40 1 9.7529 1.7817 3.5808 41 1 11.1995 0.2624 4.9675 42 1 10.2731 0.6962 6.4241 43 1 14.0360 -3.1231 8.8676 44 1 6.6585 -0.7736 4.2283 45 1 7.4557 -0.4837 2.6528 46 1 5.2190 -0.8157 2.5288 47 1 4.0279 0.2106 3.3640 48 1 4.3558 -0.0602 0.3408 49 1 3.0428 -0.7612 1.3173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280678241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:05 Heat of formation + Delta-G solvation = 10.584699 kcal Electronic energy + Delta-G solvation = -26794.937129 eV Core-core repulsion = 23077.072296 eV Total energy + Delta-G solvation = -3717.864833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.33996 -39.28541 -37.51945 -35.77030 -33.49832 -32.42217 -31.52374 -31.03063 -29.59563 -28.61294 -26.75477 -25.46482 -24.41736 -24.12318 -22.72817 -21.01427 -20.32330 -19.73115 -19.23797 -17.73209 -17.25440 -16.58340 -16.25799 -15.63344 -15.49307 -15.31996 -15.09946 -14.79998 -14.65648 -14.62019 -14.32092 -13.88322 -13.78083 -13.53636 -13.23582 -12.94646 -12.58831 -12.57555 -12.43385 -12.18638 -12.03732 -11.90104 -11.78147 -11.62575 -11.32880 -11.09811 -11.05361 -11.01497 -10.93558 -10.76536 -10.75219 -9.99657 -9.80990 -9.40911 -9.05887 -8.80279 -8.62326 -8.48943 -8.22531 -6.49432 -6.20873 -3.91507 1.79435 2.85004 3.07025 3.22856 3.24913 3.30407 3.47904 3.56534 3.70677 4.14707 4.21582 4.32531 4.43354 4.52577 4.65916 4.76331 4.81973 4.90803 4.93872 4.96913 5.06102 5.07633 5.12408 5.14276 5.17798 5.21067 5.27113 5.39163 5.46549 5.50147 5.52515 5.56686 5.61765 5.62960 5.65720 5.75631 5.78104 5.88790 5.96769 6.14218 6.15209 6.28059 6.39156 6.53889 6.55393 6.73394 6.78065 7.60202 7.67897 8.35990 8.56374 9.24328 10.86579 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.001791 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.927981 B =15625.719323 C =16311.751312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.158 4.158 3 C 0.082 3.918 4 N -0.537 5.537 5 C 0.057 3.943 6 C 0.058 3.942 7 N -0.528 5.528 8 C 0.069 3.931 9 H 0.060 0.940 10 C -0.120 4.120 11 C 0.103 3.897 12 N -0.626 5.626 13 C 0.549 3.451 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.117 3.883 26 C 0.052 3.948 27 C 0.054 3.946 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.045 0.955 48 H 0.044 0.956 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.897 13.101 -17.695 31.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.177 4.177 3 C -0.045 4.045 4 N -0.262 5.262 5 C -0.071 4.071 6 C -0.070 4.070 7 N -0.253 5.253 8 C -0.040 4.040 9 H 0.078 0.922 10 C -0.158 4.158 11 C -0.020 4.020 12 N -0.364 5.364 13 C 0.338 3.662 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.006 4.006 26 C -0.076 4.076 27 C -0.074 4.074 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -23.274 11.162 -17.365 31.110 hybrid contribution 1.349 1.949 0.308 2.390 sum -21.926 13.111 -17.057 30.718 Atomic orbital electron populations 1.23848 0.95796 1.02004 1.00074 1.22940 0.96140 0.98103 1.00467 1.21245 0.95071 0.96273 0.91934 1.62320 1.18618 1.03278 1.41965 1.22174 0.93530 0.93904 0.97490 1.22141 0.95360 0.92052 0.97434 1.62177 1.18335 1.03134 1.41694 1.22787 0.92933 0.96146 0.92158 0.92176 1.22666 0.93634 0.98282 1.01215 1.21990 0.98616 0.81687 0.99756 1.48422 1.24853 1.10739 1.52353 1.20031 0.84215 0.84783 0.77195 1.90710 1.70925 1.17362 1.60010 1.23499 0.96584 1.06546 1.03035 1.85399 1.26309 1.09960 1.61763 1.22863 1.09579 0.98750 1.37148 0.90925 1.24991 0.98132 0.94922 0.95517 1.70022 1.36317 1.07687 1.36239 0.86164 0.80982 0.79093 0.79237 1.20277 1.20742 1.19695 1.22094 0.85201 0.95762 0.97572 1.22245 0.93688 0.94320 0.97373 1.22258 0.95333 0.92238 0.97568 0.88291 0.88496 0.87049 0.90250 0.93844 0.90271 0.93783 0.89954 0.93818 0.89456 0.90273 0.91286 0.91020 0.89260 0.89303 0.92188 0.90641 0.90783 0.89640 0.93692 0.93812 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 14.32 29.01 0.42 -0.58 16 2 C -0.16 -0.98 8.57 -36.03 -0.31 -1.29 16 3 C 0.08 0.52 5.73 -4.98 -0.03 0.49 16 4 N -0.54 -4.05 4.85 -235.91 -1.14 -5.20 16 5 C 0.06 0.39 5.58 -3.76 -0.02 0.37 16 6 C 0.06 0.42 5.50 -3.77 -0.02 0.40 16 7 N -0.53 -4.56 4.61 -223.93 -1.03 -5.59 16 8 C 0.07 0.66 2.71 -65.56 -0.18 0.48 16 9 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 10 C -0.12 -1.00 5.73 -24.90 -0.14 -1.14 16 11 C 0.10 1.13 6.49 -3.07 -0.02 1.11 16 12 N -0.63 -9.32 3.33 -170.52 -0.57 -9.88 16 13 C 0.55 10.87 7.87 -10.98 -0.09 10.79 16 14 O -0.52 -12.23 16.12 5.55 0.09 -12.14 16 15 C -0.15 -3.05 5.35 36.01 0.19 -2.86 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C 0.12 1.47 5.00 -2.53 -0.01 1.46 16 26 C 0.05 0.45 5.35 -3.77 -0.02 0.43 16 27 C 0.05 0.42 5.09 -3.77 -0.02 0.40 16 28 H 0.10 0.47 8.06 -52.49 -0.42 0.05 16 29 H 0.10 0.47 7.84 -52.49 -0.41 0.06 16 30 H 0.11 0.66 6.53 -52.48 -0.34 0.32 16 31 H 0.08 0.46 7.79 -51.93 -0.40 0.06 16 32 H 0.04 0.27 8.08 -51.92 -0.42 -0.15 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.51 7.36 -51.93 -0.38 0.13 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 45 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 46 H 0.09 0.76 6.72 -51.93 -0.35 0.41 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.08 0.60 5.96 -51.93 -0.31 0.29 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -34.22 399.86 -11.67 -45.88 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -8.48 Total: -3.10 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -0.05 Total: -3.00 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -2.01 Total: -46.23 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.22 -11.67 -45.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280678241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.466 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds