Wall clock time and date at job start Sat Apr 11 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50699 * 119.99964 * 2 1 4 4 N 1.46897 * 109.47356 * 124.99703 * 3 2 1 5 5 C 1.46962 * 110.99850 * 169.99624 * 4 3 2 6 6 C 1.53053 * 109.36296 * 176.81126 * 5 4 3 7 7 N 1.46952 * 109.36321 * 58.40163 * 6 5 4 8 8 C 1.46907 * 110.99923 * 176.81145 * 7 6 5 9 9 H 1.09002 * 110.88292 * 54.19288 * 8 7 6 10 10 C 1.55155 * 111.00369 * 290.26863 * 8 7 6 11 11 C 1.54316 * 102.94294 * 206.42274 * 10 8 7 12 12 N 1.47025 * 107.27199 * 22.19519 * 11 10 8 13 13 C 1.34779 * 125.64778 * 181.02686 * 12 11 10 14 14 O 1.21289 * 119.99424 * 180.02562 * 13 12 11 15 15 C 1.50700 * 120.00229 * 0.03672 * 13 12 11 16 16 S 1.80992 * 109.47089 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00049 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99658 * 0.02562 * 17 16 15 19 19 C 1.38801 * 120.00042 * 179.97438 * 17 16 15 20 20 N 1.31630 * 119.99883 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47283 * 90.00147 * 21 19 17 23 23 H 1.48500 * 109.46960 * 210.00256 * 21 19 17 24 24 H 1.48500 * 109.46957 * 329.99919 * 21 19 17 25 25 C 1.47422 * 108.70216 * 1.05574 * 12 11 10 26 26 C 1.46957 * 110.88383 * 300.68008 * 7 6 5 27 27 C 1.46960 * 111.00196 * 46.20082 * 4 3 2 28 28 H 1.07995 * 119.99458 * 180.02562 * 1 2 3 29 29 H 1.07996 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99902 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47310 * 4.99272 * 3 2 1 32 32 H 1.09008 * 109.46611 * 244.99641 * 3 2 1 33 33 H 1.09001 * 109.48644 * 56.84588 * 5 4 3 34 34 H 1.08993 * 109.49022 * 296.78141 * 5 4 3 35 35 H 1.08997 * 109.48743 * 178.37042 * 6 5 4 36 36 H 1.09003 * 109.48776 * 298.43807 * 6 5 4 37 37 H 1.08992 * 110.72206 * 324.78887 * 10 8 7 38 38 H 1.08998 * 110.71640 * 88.05895 * 10 8 7 39 39 H 1.09003 * 109.88489 * 262.77912 * 11 10 8 40 40 H 1.09000 * 110.01353 * 141.68612 * 11 10 8 41 41 H 1.08997 * 109.47037 * 300.00438 * 15 13 12 42 42 H 1.08993 * 109.46781 * 60.00038 * 15 13 12 43 43 H 0.97002 * 119.99478 * 179.97438 * 20 19 17 44 44 H 1.09000 * 110.36827 * 217.02978 * 25 12 11 45 45 H 1.09005 * 110.45654 * 94.75657 * 25 12 11 46 46 H 1.08997 * 109.49224 * 179.29129 * 26 7 6 47 47 H 1.09002 * 109.48775 * 299.35279 * 26 7 6 48 48 H 1.08997 * 109.49033 * 63.21295 * 27 4 3 49 49 H 1.09001 * 109.49978 * 303.16939 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.9129 2.4765 1.0356 6 6 4.8130 2.5142 2.2729 7 7 5.5594 1.2521 2.3710 8 6 6.4922 1.2791 3.5056 9 1 5.9721 1.5290 4.4304 10 6 7.6618 2.2636 3.2408 11 6 8.8022 1.6862 4.1053 12 7 8.4988 0.2663 4.3363 13 6 9.2446 -0.5878 5.0650 14 8 8.8968 -1.7432 5.1882 15 6 10.5103 -0.1072 5.7268 16 16 11.2801 -1.4779 6.6237 17 6 12.6948 -0.6578 7.2802 18 1 12.8565 0.3896 7.0725 19 6 13.6007 -1.3577 8.0651 20 7 13.4027 -2.6339 8.3194 21 14 15.1000 -0.4881 8.7616 22 1 14.7678 0.0826 10.0917 23 1 16.2140 -1.4597 8.9041 24 1 15.5102 0.6040 7.8427 25 6 7.2443 -0.0687 3.6383 26 6 4.6428 0.1077 2.4699 27 6 3.7428 0.0700 1.2327 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6214 1.4025 -0.9314 33 1 3.3367 3.3999 0.9767 34 1 4.5278 2.3736 0.1415 35 1 5.5132 3.3452 2.1880 36 1 4.1999 2.6443 3.1647 37 1 7.9376 2.2601 2.1863 38 1 7.4006 3.2697 3.5688 39 1 8.8496 2.2148 5.0575 40 1 9.7529 1.7817 3.5808 41 1 11.1995 0.2624 4.9675 42 1 10.2731 0.6962 6.4241 43 1 14.0360 -3.1231 8.8676 44 1 6.6585 -0.7736 4.2283 45 1 7.4557 -0.4837 2.6528 46 1 5.2190 -0.8157 2.5288 47 1 4.0279 0.2106 3.3640 48 1 4.3558 -0.0602 0.3408 49 1 3.0428 -0.7612 1.3173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280678241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:04 Heat of formation + Delta-G solvation = -13.543155 kcal Electronic energy + Delta-G solvation = -26795.983391 eV Core-core repulsion = 23077.072296 eV Total energy + Delta-G solvation = -3718.911095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.31508 -40.26870 -38.58820 -36.58522 -34.59261 -34.13681 -32.34031 -31.99846 -30.75158 -29.60389 -27.79846 -27.41807 -25.17945 -24.71584 -23.67166 -21.76109 -20.96270 -20.71064 -20.19279 -19.58086 -18.23632 -17.90392 -17.06292 -16.88803 -16.69075 -16.36049 -15.98762 -15.91363 -15.76676 -15.55142 -15.46003 -15.10347 -14.66646 -14.49199 -14.25923 -14.03002 -13.84831 -13.75870 -13.39977 -13.16162 -13.06888 -12.89094 -12.85735 -12.64410 -12.58244 -12.54793 -12.24790 -11.98187 -11.83898 -11.75507 -11.60651 -11.35419 -11.14600 -11.01819 -10.45593 -10.29651 -9.74809 -9.45592 -9.21824 -8.69262 -8.35080 -6.14212 1.21990 1.34687 1.42871 1.44033 1.52216 1.55905 2.00968 2.26772 2.81885 2.99142 3.03110 3.18274 3.38010 3.63156 3.84135 3.84443 3.89314 4.02213 4.15619 4.19211 4.22854 4.27775 4.32399 4.35810 4.38764 4.43145 4.46629 4.50643 4.61665 4.62070 4.76341 4.80716 4.81404 4.85260 4.90712 4.95326 5.02042 5.04081 5.05959 5.19457 5.29526 5.41182 5.70598 5.82351 5.91933 5.93383 6.12053 6.14728 6.19299 6.34863 7.05798 7.06758 8.74291 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034605 B = 0.001791 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.927981 B =15625.719323 C =16311.751312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.172 4.172 3 C 0.084 3.916 4 N -0.547 5.547 5 C 0.058 3.942 6 C 0.059 3.941 7 N -0.529 5.529 8 C 0.080 3.920 9 H 0.058 0.942 10 C -0.105 4.105 11 C 0.092 3.908 12 N -0.617 5.617 13 C 0.546 3.454 14 O -0.568 6.568 15 C -0.118 4.118 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.084 0.916 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.257 1.257 25 C 0.115 3.885 26 C 0.053 3.947 27 C 0.060 3.940 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.035 0.965 48 H 0.038 0.962 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.035 16.542 -18.632 33.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.190 4.190 3 C -0.043 4.043 4 N -0.272 5.272 5 C -0.070 4.070 6 C -0.068 4.068 7 N -0.254 5.254 8 C -0.029 4.029 9 H 0.076 0.924 10 C -0.143 4.143 11 C -0.030 4.030 12 N -0.352 5.352 13 C 0.335 3.665 14 O -0.447 6.447 15 C -0.269 4.269 16 S 0.075 5.925 17 C -0.694 4.694 18 H 0.102 0.898 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.008 4.008 26 C -0.076 4.076 27 C -0.068 4.068 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.446 14.664 -18.343 33.184 hybrid contribution 1.242 0.918 0.502 1.624 sum -22.204 15.582 -17.841 32.467 Atomic orbital electron populations 1.24006 0.95683 1.02725 0.99027 1.22992 0.96490 0.98105 1.01440 1.21253 0.94923 0.96566 0.91529 1.62342 1.18886 1.03254 1.42709 1.22210 0.93502 0.94228 0.97022 1.22221 0.95623 0.91595 0.97397 1.62214 1.18470 1.03824 1.40915 1.22644 0.93345 0.94307 0.92619 0.92366 1.22653 0.91484 0.98977 1.01164 1.22379 1.00337 0.79121 1.01207 1.48362 1.24569 1.11970 1.50312 1.19813 0.84324 0.84624 0.77785 1.90688 1.72124 1.19602 1.62270 1.23287 0.97006 1.03674 1.02980 1.85603 1.27930 1.15314 1.63641 1.23199 1.09645 0.99210 1.37373 0.89814 1.26150 1.01694 0.95639 0.95636 1.70191 1.37788 1.09651 1.37151 0.84927 0.76193 0.78005 0.78687 1.19257 1.20282 1.18099 1.22202 0.84362 0.97562 0.96678 1.22208 0.93652 0.94187 0.97509 1.22167 0.95146 0.92810 0.96671 0.87655 0.87758 0.87254 0.89543 0.93754 0.88737 0.94072 0.88146 0.94436 0.88732 0.87296 0.90086 0.89990 0.87439 0.87403 0.91967 0.92465 0.90893 0.90551 0.94653 0.94356 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 14.32 67.78 0.97 -0.78 16 2 C -0.17 -1.97 8.57 25.64 0.22 -1.75 16 3 C 0.08 0.95 5.73 85.56 0.49 1.44 16 4 N -0.55 -7.50 4.85 -900.29 -4.37 -11.87 16 5 C 0.06 0.66 5.58 86.31 0.48 1.14 16 6 C 0.06 0.71 5.50 86.31 0.47 1.19 16 7 N -0.53 -8.24 4.61 -862.37 -3.97 -12.22 16 8 C 0.08 1.38 2.71 46.31 0.13 1.50 16 9 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 10 C -0.10 -1.38 5.73 31.78 0.18 -1.19 16 11 C 0.09 1.75 6.49 86.73 0.56 2.31 16 12 N -0.62 -17.82 3.33 -811.78 -2.70 -20.52 16 13 C 0.55 21.83 7.87 87.66 0.69 22.52 16 14 O -0.57 -28.09 16.12 -3.06 -0.05 -28.14 16 15 C -0.12 -4.91 5.35 71.24 0.38 -4.53 16 16 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 17 C -0.55 -31.50 9.50 67.95 0.65 -30.86 16 18 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 19 C 0.01 0.78 5.49 84.86 0.47 1.24 16 20 N -0.91 -56.42 13.22 21.65 0.29 -56.14 16 21 Si 1.00 43.67 29.55 68.60 2.03 45.70 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 25 C 0.11 2.86 5.00 86.86 0.43 3.29 16 26 C 0.05 0.89 5.35 86.31 0.46 1.36 16 27 C 0.06 0.89 5.09 86.31 0.44 1.33 16 28 H 0.11 0.88 8.06 -2.91 -0.02 0.86 16 29 H 0.10 0.86 7.84 -2.91 -0.02 0.83 16 30 H 0.11 1.26 6.53 -2.91 -0.02 1.24 16 31 H 0.09 0.85 7.79 -2.39 -0.02 0.83 16 32 H 0.04 0.49 8.08 -2.38 -0.02 0.47 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.86 7.36 -2.39 -0.02 0.84 16 36 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.11 0.89 8.06 -2.39 -0.02 0.87 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 42 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 43 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 44 H 0.06 1.63 7.87 -2.39 -0.02 1.62 16 45 H 0.07 1.85 8.06 -2.38 -0.02 1.83 16 46 H 0.08 1.41 6.72 -2.39 -0.02 1.39 16 47 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.09 1.23 5.96 -2.39 -0.01 1.21 16 Total: -1.00 -76.85 399.86 -2.01 -78.87 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.91 Total: 15.91 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 7.02 Total: -1.78 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -10.76 Total: -100.75 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.05 Total: -28.14 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -76.85 -2.01 -78.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280678241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.323 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds