Wall clock time and date at job start Sat Apr 11 2020 05:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35721 * 117.00350 * 2 1 4 4 C 1.39357 * 120.35630 * 0.02562 * 3 2 1 5 5 N 1.31293 * 120.88077 * 180.02562 * 4 3 2 6 6 C 1.32882 * 121.71861 * 359.97438 * 5 4 3 7 7 C 1.47758 * 119.69079 * 179.97438 * 6 5 4 8 8 O 1.21563 * 120.00504 * 175.36436 * 7 6 5 9 9 N 1.34782 * 119.99649 * 355.35922 * 7 6 5 10 10 C 1.46499 * 119.99839 * 4.31769 * 9 7 6 11 11 C 1.53001 * 109.47152 * 82.57741 * 10 9 7 12 12 N 1.46505 * 109.47175 * 179.97438 * 11 10 9 13 13 C 1.46495 * 119.99690 * 89.99918 * 12 11 10 14 14 C 1.36933 * 120.00072 * 269.99825 * 12 11 10 15 15 H 1.08003 * 119.99860 * 21.17438 * 14 12 11 16 16 C 1.38817 * 120.00034 * 201.17295 * 14 12 11 17 17 N 1.31619 * 119.99619 * 12.12752 * 16 14 12 18 18 Si 1.86792 * 119.99831 * 192.13178 * 16 14 12 19 19 H 1.48501 * 109.47358 * 59.99828 * 18 16 14 20 20 H 1.48501 * 109.47213 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47509 * 299.99975 * 18 16 14 22 22 C 1.46499 * 120.00013 * 184.31273 * 9 7 6 23 23 C 1.52997 * 109.47232 * 116.89707 * 22 9 7 24 24 C 1.53004 * 109.47239 * 236.89929 * 22 9 7 25 25 C 1.39724 * 120.62610 * 0.02562 * 6 5 4 26 26 F 1.35100 * 120.46462 * 180.02562 * 25 6 5 27 27 C 1.38685 * 119.06649 * 359.97438 * 25 6 5 28 28 H 1.09003 * 109.47366 * 60.00014 * 1 2 3 29 29 H 1.09000 * 109.47101 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47271 * 299.99589 * 1 2 3 31 31 H 1.08004 * 119.56076 * 359.73843 * 4 3 2 32 32 H 1.09004 * 109.46989 * 202.57348 * 10 9 7 33 33 H 1.08995 * 109.47243 * 322.57402 * 10 9 7 34 34 H 1.08995 * 109.47147 * 299.99649 * 11 10 9 35 35 H 1.09004 * 109.47157 * 59.99471 * 11 10 9 36 36 H 1.09007 * 109.47627 * 95.15034 * 13 12 11 37 37 H 1.09000 * 109.47051 * 215.15084 * 13 12 11 38 38 H 1.08997 * 109.47410 * 335.15308 * 13 12 11 39 39 H 0.96996 * 119.99364 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.46976 * 356.89528 * 22 9 7 41 41 H 1.09004 * 109.47286 * 60.00011 * 23 22 9 42 42 H 1.09000 * 109.47283 * 180.02562 * 23 22 9 43 43 H 1.09003 * 109.46913 * 299.99898 * 23 22 9 44 44 H 1.08995 * 109.47235 * 59.99952 * 24 22 9 45 45 H 1.09000 * 109.47161 * 180.02562 * 24 22 9 46 46 H 1.09004 * 109.46809 * 299.99701 * 24 22 9 47 47 H 1.08004 * 120.78554 * 180.02562 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 1.2935 2.3827 0.0005 5 7 1.8789 3.5579 0.0000 6 6 3.2022 3.6793 -0.0005 7 6 3.8138 5.0243 -0.0016 8 8 5.0206 5.1435 0.0830 9 7 3.0336 6.1193 -0.0965 10 6 1.5751 5.9810 -0.1032 11 6 1.0677 5.8594 1.3350 12 7 -0.3908 5.7218 1.3284 13 6 -1.0007 4.3916 1.2604 14 6 -1.1840 6.8366 1.3857 15 1 -0.7859 7.7980 1.0965 16 6 -2.4997 6.7309 1.8154 17 7 -2.9173 5.6228 2.3900 18 14 -3.6774 8.1612 1.5780 19 1 -3.7965 8.4694 0.1302 20 1 -5.0121 7.7985 2.1188 21 1 -3.1599 9.3532 2.2968 22 6 3.6440 7.4475 -0.1929 23 6 3.2788 8.0803 -1.5372 24 6 3.1258 8.3307 0.9441 25 6 4.0208 2.5470 -0.0011 26 9 5.3658 2.6741 -0.0011 27 6 3.4332 1.2908 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.2151 2.3247 -0.0033 32 1 1.1292 6.8579 -0.5729 33 1 1.2974 5.0882 -0.6633 34 1 1.5136 4.9826 1.8047 35 1 1.3456 6.7523 1.8951 36 1 -1.2356 4.0476 2.2678 37 1 -1.9161 4.4412 0.6708 38 1 -0.3042 3.6960 0.7923 39 1 -3.8366 5.5492 2.6905 40 1 4.7275 7.3559 -0.1168 41 1 2.1953 8.1720 -1.6132 42 1 3.7333 9.0684 -1.6090 43 1 3.6480 7.4512 -2.3471 44 1 3.3860 7.8799 1.9017 45 1 3.5796 9.3191 0.8721 46 1 2.0423 8.4223 0.8680 47 1 4.0395 0.3969 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284538650.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:18 Heat of formation + Delta-G solvation = -21.578168 kcal Electronic energy + Delta-G solvation = -31551.293060 eV Core-core repulsion = 27265.820364 eV Total energy + Delta-G solvation = -4285.472696 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.00086 -41.04630 -39.72255 -38.04460 -36.63649 -35.18718 -32.99331 -32.01775 -31.18342 -30.24084 -27.99183 -27.78772 -26.99165 -25.82824 -24.81566 -23.51966 -23.37262 -21.65932 -20.54367 -19.17246 -18.63981 -18.07080 -17.10809 -16.65166 -16.40517 -16.29856 -16.17511 -15.68566 -15.23339 -14.94345 -14.65085 -14.53450 -13.96573 -13.88577 -13.58007 -13.45447 -13.27718 -12.98548 -12.83345 -12.75824 -12.58492 -12.41100 -12.05619 -11.90170 -11.79136 -11.70698 -11.41287 -10.99690 -10.84164 -10.78317 -10.60941 -10.47544 -10.06738 -9.99811 -9.90402 -9.81075 -9.60647 -9.04250 -8.73856 -8.59105 -8.24648 -6.68102 -5.69476 -3.13623 0.48468 0.84936 2.69922 2.76221 3.13261 3.38593 3.44146 3.44813 3.67705 3.98152 4.12708 4.31273 4.47198 4.57388 4.76633 4.81906 4.97664 5.05353 5.16443 5.27629 5.32205 5.40651 5.45808 5.47529 5.65956 5.67170 5.76624 5.78884 5.93993 5.99666 6.10432 6.12525 6.30510 6.37832 6.46915 6.56613 6.61770 6.79672 6.87199 7.02402 7.12442 7.41215 7.51682 7.70046 7.75710 7.82322 8.35348 8.43380 9.28051 9.92316 10.41309 11.34969 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009255 B = 0.004976 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3024.690207 B = 5625.867685 C = 8268.666098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.305 6.305 3 C 0.130 3.870 4 C 0.006 3.994 5 N -0.360 5.360 6 C 0.006 3.994 7 C 0.570 3.430 8 O -0.543 6.543 9 N -0.579 5.579 10 C 0.073 3.927 11 C 0.153 3.847 12 N -0.595 5.595 13 C 0.159 3.841 14 C -0.249 4.249 15 H 0.066 0.934 16 C 0.000 4.000 17 N -0.911 5.911 18 Si 0.902 3.098 19 H -0.285 1.285 20 H -0.292 1.292 21 H -0.284 1.284 22 C 0.131 3.869 23 C -0.160 4.160 24 C -0.161 4.161 25 C 0.150 3.850 26 F -0.103 7.103 27 C -0.165 4.165 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.181 0.819 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.033 0.967 35 H 0.042 0.958 36 H 0.022 0.978 37 H 0.038 0.962 38 H 0.010 0.990 39 H 0.251 0.749 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.386 -8.257 -7.134 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.216 6.216 3 C 0.081 3.919 4 C -0.155 4.155 5 N -0.071 5.071 6 C -0.132 4.132 7 C 0.357 3.643 8 O -0.421 6.421 9 N -0.310 5.310 10 C -0.051 4.051 11 C 0.024 3.976 12 N -0.318 5.318 13 C 0.015 3.985 14 C -0.379 4.379 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.557 5.557 18 Si 0.732 3.268 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.028 3.972 23 C -0.218 4.218 24 C -0.219 4.219 25 C 0.127 3.873 26 F -0.081 7.081 27 C -0.192 4.192 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.197 0.803 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.028 0.972 39 H 0.061 0.939 40 H 0.114 0.886 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.467 -7.654 -7.009 14.047 hybrid contribution -0.512 0.106 0.005 0.523 sum 8.955 -7.548 -7.005 13.647 Atomic orbital electron populations 1.23308 0.76654 1.04902 1.02799 1.86024 1.22693 1.25564 1.87316 1.20089 0.91984 0.86236 0.93611 1.23567 1.01893 0.86547 1.03530 1.68372 1.08402 1.24816 1.05527 1.21309 0.89713 0.93901 1.08311 1.17554 0.85910 0.83305 0.77507 1.90793 1.13539 1.86168 1.51581 1.48034 1.08390 1.04986 1.69573 1.23238 0.75657 1.03640 1.02597 1.20981 0.85233 0.98588 0.92775 1.43733 0.99045 1.03386 1.85587 1.20974 0.94408 0.84383 0.98768 1.19162 0.93125 0.88222 1.37355 0.91592 1.24945 0.98564 0.97164 0.99072 1.70068 1.16295 1.26371 1.42938 0.86376 0.80493 0.82095 0.77814 1.21194 1.21748 1.21065 1.21081 0.99121 0.81727 0.95271 1.22140 1.02575 1.00461 0.96599 1.22197 1.02734 0.98843 0.98158 1.18210 0.78494 0.92804 0.97828 1.91619 1.27474 1.96451 1.92521 1.20738 0.92876 0.97510 1.08028 0.91680 0.87483 0.91226 0.80270 0.91387 0.86972 0.94863 0.93951 0.95972 0.94311 0.97167 0.93894 0.88612 0.91762 0.91650 0.92670 0.92246 0.91905 0.91111 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -3.11 10.50 -18.87 -0.20 -3.31 16 3 C 0.13 1.52 6.72 -38.87 -0.26 1.26 16 4 C 0.01 0.08 8.96 -17.37 -0.16 -0.07 16 5 N -0.36 -5.58 3.71 -9.63 -0.04 -5.62 16 6 C 0.01 0.10 6.51 -82.97 -0.54 -0.44 16 7 C 0.57 10.04 7.58 -12.37 -0.09 9.95 16 8 O -0.54 -10.56 14.65 5.31 0.08 -10.49 16 9 N -0.58 -9.54 2.39 -167.24 -0.40 -9.94 16 10 C 0.07 1.29 4.44 -4.04 -0.02 1.27 16 11 C 0.15 3.12 5.16 -4.04 -0.02 3.10 16 12 N -0.59 -14.23 2.93 -181.12 -0.53 -14.76 16 13 C 0.16 3.62 8.96 59.84 0.54 4.16 16 14 C -0.25 -6.57 9.68 -15.06 -0.15 -6.71 16 15 H 0.07 1.70 7.86 -52.48 -0.41 1.29 16 16 C 0.00 0.01 5.12 -17.43 -0.09 -0.08 16 17 N -0.91 -25.76 10.55 55.49 0.59 -25.17 16 18 Si 0.90 21.37 29.57 -169.99 -5.03 16.34 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.13 1.90 3.23 -67.93 -0.22 1.68 16 23 C -0.16 -1.99 9.23 37.16 0.34 -1.65 16 24 C -0.16 -2.26 8.16 37.16 0.30 -1.95 16 25 C 0.15 2.16 7.30 -38.86 -0.28 1.88 16 26 F -0.10 -1.59 15.55 2.25 0.04 -1.56 16 27 C -0.16 -1.95 10.10 -39.12 -0.40 -2.34 16 28 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 29 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 7.67 -51.93 -0.40 0.13 16 31 H 0.18 2.14 4.63 -52.48 -0.24 1.90 16 32 H 0.07 1.23 6.46 -51.93 -0.34 0.90 16 33 H 0.11 2.01 5.09 -55.73 -0.28 1.72 16 34 H 0.03 0.69 6.84 -51.93 -0.36 0.34 16 35 H 0.04 0.90 6.20 -51.93 -0.32 0.58 16 36 H 0.02 0.56 7.39 -51.92 -0.38 0.18 16 37 H 0.04 0.95 7.19 -51.93 -0.37 0.58 16 38 H 0.01 0.19 3.48 -51.93 -0.18 0.01 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.10 1.44 6.90 -51.93 -0.36 1.09 16 41 H 0.06 0.84 6.82 -51.93 -0.35 0.49 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.10 6.70 -51.93 -0.35 0.75 16 47 H 0.16 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -31.51 370.07 -6.38 -37.88 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -6.42 Total: -0.12 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: -0.05 Total: 11.16 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.38 Total: -55.48 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.12 Total: -13.80 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -6.38 -37.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284538650.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.306 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds