Wall clock time and date at job start Sat Apr 11 2020 05:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50710 * 109.47007 * 2 1 4 4 N 1.29424 * 124.80456 * 90.02745 * 3 2 1 5 5 C 1.30941 * 117.36653 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.90637 * 179.97438 * 5 4 3 7 7 C 1.35664 * 114.18779 * 359.97438 * 5 4 3 8 8 C 1.46683 * 126.12700 * 180.02562 * 7 5 4 9 9 O 1.21689 * 120.00369 * 351.59691 * 8 7 5 10 10 N 1.34777 * 119.99595 * 171.59270 * 8 7 5 11 11 C 1.46499 * 120.00333 * 3.08003 * 10 8 7 12 12 C 1.52996 * 109.46963 * 83.20234 * 11 10 8 13 13 N 1.46499 * 109.46963 * 179.97438 * 12 11 10 14 14 C 1.46494 * 120.00256 * 269.99588 * 13 12 11 15 15 C 1.36942 * 119.99731 * 90.00260 * 13 12 11 16 16 H 1.07995 * 120.00440 * 33.98731 * 15 13 12 17 17 C 1.38813 * 119.99794 * 213.98452 * 15 13 12 18 18 N 1.31625 * 119.99976 * 5.49645 * 17 15 13 19 19 Si 1.86801 * 120.00177 * 185.49691 * 17 15 13 20 20 H 1.48498 * 109.46823 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47395 * 120.00004 * 19 17 15 22 22 H 1.48504 * 109.46957 * 240.00243 * 19 17 15 23 23 C 1.46508 * 119.99947 * 183.07706 * 10 8 7 24 24 C 1.53005 * 109.46975 * 303.89293 * 23 10 8 25 25 C 1.52998 * 109.46929 * 63.88924 * 23 10 8 26 26 S 1.70955 * 124.80391 * 270.29886 * 3 2 1 27 27 H 1.09001 * 109.46903 * 59.99635 * 1 2 3 28 28 H 1.08993 * 109.47215 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47094 * 300.00044 * 1 2 3 30 30 H 1.09000 * 109.47390 * 240.00117 * 2 1 3 31 31 H 1.08996 * 109.47278 * 119.99757 * 2 1 3 32 32 H 1.08997 * 109.47361 * 270.00096 * 6 5 4 33 33 H 1.09004 * 109.46965 * 29.99939 * 6 5 4 34 34 H 1.09000 * 109.47073 * 149.99666 * 6 5 4 35 35 H 1.09001 * 109.47330 * 203.19822 * 11 10 8 36 36 H 1.09002 * 109.46943 * 323.20402 * 11 10 8 37 37 H 1.09003 * 109.47466 * 299.99711 * 12 11 10 38 38 H 1.09007 * 109.47562 * 60.00097 * 12 11 10 39 39 H 1.09004 * 109.47228 * 94.86834 * 14 13 12 40 40 H 1.09002 * 109.47575 * 214.86058 * 14 13 12 41 41 H 1.08997 * 109.47572 * 334.86914 * 14 13 12 42 42 H 0.96999 * 119.99751 * 179.97438 * 18 17 15 43 43 H 1.08993 * 109.47220 * 183.89400 * 23 10 8 44 44 H 1.09005 * 109.46860 * 65.48437 * 24 23 10 45 45 H 1.08994 * 109.46875 * 185.47770 * 24 23 10 46 46 H 1.08997 * 109.47333 * 305.48644 * 24 23 10 47 47 H 1.09006 * 109.46677 * 64.93211 * 25 23 10 48 48 H 1.08997 * 109.47183 * 184.92829 * 25 23 10 49 49 H 1.08992 * 109.47596 * 304.93514 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2790 2.1172 1.0627 5 6 2.7122 3.3412 0.8932 6 6 3.0375 4.2610 2.0418 7 6 2.8429 3.7097 -0.4059 8 6 3.3051 5.0140 -0.8926 9 8 3.4672 5.9325 -0.1110 10 7 3.5505 5.1949 -2.2054 11 6 3.2913 4.1103 -3.1554 12 6 1.8109 4.1135 -3.5416 13 7 1.5519 3.0292 -4.4921 14 6 1.6754 3.2717 -5.9315 15 6 1.1940 1.7889 -4.0349 16 1 0.5904 1.6950 -3.1443 17 6 1.6072 0.6523 -4.7163 18 7 2.4309 0.7600 -5.7373 19 14 0.9942 -1.0302 -4.1843 20 1 0.0858 -0.8803 -3.0192 21 1 0.2595 -1.6671 -5.3067 22 1 2.1505 -1.8807 -3.8037 23 6 4.0763 6.4765 -2.6825 24 6 3.1393 7.6055 -2.2485 25 6 5.4664 6.7105 -2.0878 26 16 2.3507 2.3433 -1.4037 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.1471 4.8256 2.3185 33 1 3.3739 3.6719 2.8950 34 1 3.8267 4.9507 1.7427 35 1 3.8999 4.2558 -4.0479 36 1 3.5445 3.1554 -2.6946 37 1 1.2022 3.9679 -2.6491 38 1 1.5576 5.0683 -4.0024 39 1 2.6710 2.9788 -6.2652 40 1 0.9267 2.6856 -6.4644 41 1 1.5208 4.3311 -6.1361 42 1 2.7198 -0.0343 -6.2132 43 1 4.1446 6.4589 -3.7701 44 1 3.1465 7.6860 -1.1615 45 1 3.4768 8.5456 -2.6847 46 1 2.1270 7.3891 -2.5901 47 1 6.1555 5.9557 -2.4669 48 1 5.8209 7.7014 -2.3716 49 1 5.4133 6.6410 -1.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284553204.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:21 Heat of formation + Delta-G solvation = 27.365850 kcal Electronic energy + Delta-G solvation = -29656.063342 eV Core-core repulsion = 25938.926194 eV Total energy + Delta-G solvation = -3717.137148 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12480 -39.10064 -36.40754 -35.34457 -33.98012 -32.88038 -31.31001 -30.34881 -28.22324 -27.49643 -27.00998 -26.07841 -25.05045 -23.71861 -22.69306 -21.47783 -20.77691 -20.03515 -17.84109 -17.54331 -17.07702 -16.42645 -15.52419 -15.36832 -14.92114 -14.71337 -14.21135 -14.10191 -13.97109 -13.71113 -13.55821 -13.19283 -13.13592 -13.01255 -12.68156 -12.56780 -12.51774 -12.15557 -11.85946 -11.72142 -11.65251 -11.60421 -11.38675 -11.22246 -11.12052 -11.06234 -10.90519 -10.86381 -10.70359 -10.62217 -10.49081 -10.15855 -10.05348 -9.30910 -8.94634 -8.71172 -8.65047 -8.47884 -7.90477 -6.83822 -6.00883 -3.56657 0.81942 1.98006 2.33028 2.91170 3.16416 3.24116 3.27636 3.28970 3.60565 4.24585 4.44221 4.80521 5.14820 5.21335 5.25030 5.25598 5.27578 5.38360 5.44206 5.46992 5.52398 5.58133 5.76162 5.80174 5.82436 5.88023 5.96849 5.98003 6.02961 6.04255 6.08225 6.09277 6.21263 6.24999 6.29439 6.37833 6.39495 6.47953 6.58798 6.64301 6.73802 6.94893 7.13524 7.54024 7.56308 7.66962 8.19676 8.22815 8.48746 8.96574 9.56257 10.13207 10.99539 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010323 B = 0.006275 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.768358 B = 4461.169884 C = 6687.721576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C -0.012 4.012 4 N -0.496 5.496 5 C 0.136 3.864 6 C -0.078 4.078 7 C -0.359 4.359 8 C 0.602 3.398 9 O -0.539 6.539 10 N -0.603 5.603 11 C 0.073 3.927 12 C 0.132 3.868 13 N -0.594 5.594 14 C 0.155 3.845 15 C -0.253 4.253 16 H 0.070 0.930 17 C 0.023 3.977 18 N -0.885 5.885 19 Si 0.880 3.120 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.148 3.852 24 C -0.169 4.169 25 C -0.166 4.166 26 S 0.325 5.675 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.051 0.949 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.002 0.998 42 H 0.258 0.742 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.661 5.495 5.832 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.284 4.284 4 N -0.212 5.212 5 C -0.005 4.005 6 C -0.137 4.137 7 C -0.482 4.482 8 C 0.391 3.609 9 O -0.420 6.420 10 N -0.336 5.336 11 C -0.054 4.054 12 C 0.002 3.998 13 N -0.317 5.317 14 C 0.011 3.989 15 C -0.387 4.387 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.526 5.526 19 Si 0.708 3.292 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.045 3.955 24 C -0.226 4.226 25 C -0.224 4.224 26 S 0.592 5.408 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.639 5.322 5.520 7.841 hybrid contribution 0.011 -0.713 0.656 0.969 sum 1.650 4.609 6.176 7.881 Atomic orbital electron populations 1.21764 0.93775 1.02210 1.02681 1.20175 0.96700 0.88475 1.03572 1.28170 1.01084 1.02353 0.96748 1.66098 1.16624 1.05684 1.32775 1.20375 0.95977 0.90930 0.93248 1.20456 1.02728 0.96750 0.93792 1.26185 1.19596 1.03353 0.99096 1.16788 0.76642 0.85758 0.81717 1.90643 1.54166 1.41972 1.55199 1.48083 1.64360 1.14660 1.06526 1.23053 1.01655 0.88364 0.92354 1.21472 0.91817 0.92347 0.94126 1.43776 1.79554 1.07569 1.00779 1.20893 1.00738 0.93843 0.83465 1.19092 1.26765 0.82425 1.10410 0.91265 1.25332 0.96519 0.98115 0.98040 1.69979 1.33119 1.28488 1.21031 0.86554 0.78863 0.84638 0.79165 1.18921 1.21039 1.20910 1.20983 0.93379 0.82713 0.98425 1.22240 0.99032 0.96936 1.04430 1.22171 0.95811 1.01234 1.03149 1.87318 1.52295 0.99853 1.01363 0.91805 0.91868 0.92314 0.89900 0.89719 0.90980 0.91756 0.89278 0.89486 0.90092 0.93124 0.93523 0.94538 0.94337 0.97991 0.93186 0.89686 0.89825 0.92396 0.92740 0.92883 0.91964 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.89 37.16 0.37 -1.73 16 2 C -0.05 -0.76 6.51 -27.88 -0.18 -0.94 16 3 C -0.01 -0.22 6.64 -13.29 -0.09 -0.31 16 4 N -0.50 -9.19 10.50 -7.70 -0.08 -9.27 16 5 C 0.14 2.48 6.79 -83.89 -0.57 1.91 16 6 C -0.08 -1.22 9.60 36.01 0.35 -0.87 16 7 C -0.36 -6.64 6.14 -37.09 -0.23 -6.87 16 8 C 0.60 10.79 6.94 -12.85 -0.09 10.70 16 9 O -0.54 -9.93 10.70 5.20 0.06 -9.87 16 10 N -0.60 -9.85 2.44 -167.63 -0.41 -10.26 16 11 C 0.07 1.28 5.26 -4.04 -0.02 1.26 16 12 C 0.13 2.47 5.21 -4.04 -0.02 2.45 16 13 N -0.59 -12.94 2.89 -181.12 -0.52 -13.46 16 14 C 0.16 3.34 9.08 59.84 0.54 3.88 16 15 C -0.25 -5.89 7.45 -15.06 -0.11 -6.00 16 16 H 0.07 1.59 6.74 -52.49 -0.35 1.24 16 17 C 0.02 0.55 5.26 -17.43 -0.09 0.45 16 18 N -0.88 -22.60 11.03 55.49 0.61 -21.99 16 19 Si 0.88 18.90 29.56 -169.99 -5.02 13.87 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.15 2.04 3.27 -67.92 -0.22 1.82 16 24 C -0.17 -2.22 8.94 37.16 0.33 -1.89 16 25 C -0.17 -2.12 9.24 37.16 0.34 -1.78 16 26 S 0.33 6.07 12.50 -107.50 -1.34 4.72 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.42 6.23 -51.93 -0.32 1.10 16 35 H 0.09 1.51 7.81 -51.93 -0.41 1.10 16 36 H 0.08 1.58 4.37 -22.16 -0.10 1.48 16 37 H 0.05 0.99 6.10 -49.79 -0.30 0.69 16 38 H 0.05 0.83 7.86 -51.92 -0.41 0.42 16 39 H 0.04 0.84 7.18 -51.93 -0.37 0.47 16 40 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 41 H 0.00 0.03 7.84 -51.93 -0.41 -0.38 16 42 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 43 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 44 H 0.08 1.26 6.01 -51.93 -0.31 0.95 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 1.07 6.45 -51.93 -0.34 0.73 16 LS Contribution 387.20 15.07 5.83 5.83 Total: -1.00 -26.25 387.20 -8.48 -34.73 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -7.91 Total: 3.61 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 0.31 Total: 2.09 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.40 Total: -54.99 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.06 Total: -9.87 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 6.07 SS G_CDS: -1.34 Total: 4.72 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -26.25 -8.48 -34.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284553204.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.097 kcal (2) G-P(sol) polarization free energy of solvation -26.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds