Wall clock time and date at job start Sat Apr 11 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29434 * 124.80108 * 2 1 4 4 C 1.30942 * 117.36033 * 179.97438 * 3 2 1 5 5 C 1.50702 * 122.90138 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47162 * 90.02736 * 5 4 3 7 7 C 1.53000 * 109.47167 * 174.99910 * 6 5 4 8 8 C 1.53006 * 109.47178 * 294.99482 * 6 5 4 9 9 C 1.35659 * 114.19387 * 0.02562 * 4 3 2 10 10 C 1.46681 * 126.13303 * 180.02562 * 9 4 3 11 11 O 1.21691 * 119.99756 * 359.97178 * 10 9 4 12 12 N 1.34776 * 120.00456 * 179.97438 * 10 9 4 13 13 C 1.46494 * 120.00373 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47296 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47163 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47411 * 305.00439 * 15 14 13 17 17 C 1.53004 * 109.47036 * 185.00081 * 15 14 13 18 18 N 1.46498 * 109.46742 * 65.00374 * 15 14 13 19 19 C 1.36942 * 119.99957 * 204.99590 * 18 15 14 20 20 H 1.08000 * 119.99700 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00043 * 180.02562 * 19 18 15 22 22 N 1.31617 * 120.00104 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99936 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47386 * 89.99750 * 23 21 19 25 25 H 1.48502 * 109.47002 * 209.99436 * 23 21 19 26 26 H 1.48502 * 109.46981 * 329.99382 * 23 21 19 27 27 S 1.70945 * 124.80720 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47022 * 89.99947 * 1 2 3 29 29 H 1.08991 * 109.47254 * 209.99757 * 1 2 3 30 30 H 1.08999 * 109.47306 * 330.00136 * 1 2 3 31 31 H 1.09000 * 109.46956 * 210.02515 * 5 4 3 32 32 H 1.08998 * 109.47184 * 330.02289 * 5 4 3 33 33 H 1.08994 * 109.47775 * 54.99867 * 6 5 4 34 34 H 1.09006 * 109.47042 * 59.99694 * 7 6 5 35 35 H 1.09007 * 109.47510 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46966 * 299.99951 * 7 6 5 37 37 H 1.08994 * 109.47465 * 180.02562 * 8 6 5 38 38 H 1.08994 * 109.47082 * 300.00810 * 8 6 5 39 39 H 1.09009 * 109.46701 * 59.99809 * 8 6 5 40 40 H 0.96998 * 119.99877 * 359.97438 * 12 10 9 41 41 H 1.09004 * 109.47721 * 300.00538 * 13 12 10 42 42 H 1.09005 * 109.46722 * 60.00258 * 13 12 10 43 43 H 1.08997 * 109.47391 * 300.00325 * 14 13 12 44 44 H 1.09005 * 109.46816 * 60.00571 * 14 13 12 45 45 H 1.09004 * 109.47067 * 180.02562 * 17 15 14 46 46 H 1.08995 * 109.46976 * 300.00161 * 17 15 14 47 47 H 1.09003 * 109.46790 * 60.00560 * 17 15 14 48 48 H 0.97002 * 120.00503 * 25.00739 * 18 15 14 49 49 H 0.97003 * 120.00245 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 0.0005 5 6 4.5197 2.0419 0.0012 6 6 4.8498 2.4299 1.4438 7 6 5.9327 3.5107 1.4463 8 6 3.5912 2.9675 2.1281 9 6 3.9352 -0.4058 0.0004 10 6 5.3189 -0.8925 0.0015 11 8 6.2425 -0.1002 0.0020 12 7 5.5674 -2.2171 0.0018 13 6 6.9493 -2.7032 0.0022 14 6 6.9518 -4.2332 0.0032 15 6 8.3952 -4.7408 0.0043 16 1 8.9340 -4.3058 -0.8374 17 6 8.3995 -6.2658 -0.1205 18 7 9.0487 -4.3515 1.2563 19 6 10.4109 -4.2204 1.3056 20 1 11.0034 -4.4037 0.4214 21 6 11.0302 -3.8520 2.4921 22 7 10.3081 -3.6282 3.5695 23 14 12.8884 -3.6725 2.5592 24 1 13.2635 -2.2765 2.2194 25 1 13.3677 -3.9948 3.9272 26 1 13.5111 -4.6037 1.5843 27 16 2.4828 -1.4036 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 5.4333 1.7429 -0.5127 32 1 4.0766 2.8952 -0.5123 33 1 5.2100 1.5535 1.9825 34 1 5.5725 4.3872 0.9076 35 1 6.1676 3.7875 2.4741 36 1 6.8293 3.1278 0.9588 37 1 3.8264 3.2444 3.1557 38 1 3.2310 3.8439 1.5894 39 1 2.8197 2.1975 2.1263 40 1 4.8311 -2.8487 0.0017 41 1 7.4629 -2.3392 -0.8876 42 1 7.4623 -2.3389 0.8924 43 1 6.4384 -4.5969 0.8932 44 1 6.4387 -4.5979 -0.8868 45 1 9.4278 -6.6275 -0.1193 46 1 7.8607 -6.7007 0.7212 47 1 7.9133 -6.5554 -1.0521 48 1 8.5166 -4.1867 2.0504 49 1 10.7409 -3.3704 4.3985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317400097.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:25 Heat of formation + Delta-G solvation = -9.384816 kcal Electronic energy + Delta-G solvation = -27211.625606 eV Core-core repulsion = 23492.894830 eV Total energy + Delta-G solvation = -3718.730776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65187 -39.12556 -36.63298 -36.10505 -34.40347 -32.66825 -32.23114 -29.81794 -28.96722 -28.29053 -27.32864 -27.06523 -23.97375 -23.36223 -22.92953 -21.38028 -20.31052 -20.03613 -19.25277 -18.17185 -17.26067 -16.81693 -15.79014 -15.72417 -15.20944 -14.98575 -14.69159 -14.63052 -14.12603 -14.00453 -13.90125 -13.57396 -13.49456 -13.05781 -12.99035 -12.76710 -12.67007 -12.50680 -12.23992 -12.05922 -11.79727 -11.67130 -11.55732 -11.11857 -10.97415 -10.93247 -10.89279 -10.73536 -10.63882 -10.59356 -10.28517 -10.10624 -9.98768 -9.70474 -9.69145 -9.62250 -9.01795 -8.90073 -8.78641 -6.94408 -5.73897 -3.02728 0.05370 0.93433 1.33880 2.28676 3.16107 3.20149 3.46353 3.51404 3.52705 3.72385 4.55231 4.61901 4.73634 4.87626 4.91138 4.95750 5.01032 5.11773 5.19316 5.27763 5.37768 5.43606 5.56153 5.62428 5.66696 5.70084 5.71907 5.76019 5.86268 5.88183 5.94772 6.04854 6.09140 6.16269 6.25290 6.32809 6.34951 6.38356 6.40971 6.45673 6.62612 6.68463 6.85702 7.05686 7.38782 7.54226 7.73098 8.21565 8.44308 9.55773 10.12084 10.46656 11.48695 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.002816 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.647315 B = 9941.149885 C =11704.060690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.059 3.941 3 N -0.472 5.472 4 C 0.155 3.845 5 C -0.052 4.052 6 C -0.083 4.083 7 C -0.143 4.143 8 C -0.143 4.143 9 C -0.291 4.291 10 C 0.591 3.409 11 O -0.514 6.514 12 N -0.722 5.722 13 C 0.123 3.877 14 C -0.133 4.133 15 C 0.175 3.825 16 H 0.050 0.950 17 C -0.163 4.163 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 S 0.149 5.851 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.393 0.607 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.035 0.965 48 H 0.383 0.617 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.611 7.003 -8.513 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.217 4.217 3 N -0.187 5.187 4 C 0.018 3.982 5 C -0.092 4.092 6 C -0.102 4.102 7 C -0.201 4.201 8 C -0.201 4.201 9 C -0.415 4.415 10 C 0.375 3.625 11 O -0.391 6.391 12 N -0.373 5.373 13 C 0.001 3.999 14 C -0.172 4.172 15 C 0.065 3.935 16 H 0.068 0.932 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.219 1.219 26 H -0.208 1.208 27 S 0.406 5.594 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.226 0.774 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.244 6.956 -8.540 24.822 hybrid contribution 0.975 0.331 0.427 1.114 sum -21.270 7.287 -8.113 23.902 Atomic orbital electron populations 1.20514 0.84763 1.04565 1.04173 1.27358 1.02005 0.91122 1.01220 1.66108 1.04443 1.31013 1.17109 1.20626 0.89704 0.93479 0.94426 1.20609 0.96853 0.93191 0.98557 1.20955 0.95728 0.99053 0.94484 1.21784 0.98604 0.97914 1.01766 1.21856 0.97393 1.01004 0.99833 1.25567 0.97992 0.97112 1.20798 1.16662 0.85823 0.82822 0.77198 1.90829 1.44050 1.54682 1.49548 1.46030 1.10186 1.05915 1.75170 1.21522 0.80125 0.94382 1.03875 1.22077 0.99713 0.93747 1.01675 1.20142 0.89804 0.92400 0.91190 0.93242 1.22427 1.01492 0.99277 0.99170 1.42457 1.04525 1.82127 1.07456 1.19211 0.83239 1.38856 0.95589 0.91221 1.24721 0.97723 1.02495 0.95910 1.69653 1.34068 1.53651 1.00692 0.86226 0.85686 0.77809 0.76688 1.21694 1.21863 1.20832 1.83810 0.96871 1.11776 1.66940 0.89210 0.89800 0.88938 0.87525 0.90472 0.90906 0.92934 0.92636 0.91975 0.93107 0.92738 0.92844 0.77394 0.91457 0.89351 0.91559 0.91888 0.92678 0.93522 0.94571 0.78291 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.46 36.01 0.38 -0.05 16 2 C 0.06 0.55 7.39 -13.29 -0.10 0.45 16 3 N -0.47 -5.58 9.64 -7.70 -0.07 -5.65 16 4 C 0.15 2.03 5.32 -83.89 -0.45 1.58 16 5 C -0.05 -0.68 4.50 -27.88 -0.13 -0.80 16 6 C -0.08 -1.05 2.91 -90.62 -0.26 -1.31 16 7 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 8 C -0.14 -1.61 8.97 37.16 0.33 -1.28 16 9 C -0.29 -3.83 6.48 -37.10 -0.24 -4.07 16 10 C 0.59 9.21 7.78 -12.85 -0.10 9.11 16 11 O -0.51 -9.61 14.27 5.20 0.07 -9.53 16 12 N -0.72 -10.17 5.55 -61.62 -0.34 -10.51 16 13 C 0.12 2.03 5.56 -4.05 -0.02 2.01 16 14 C -0.13 -2.02 4.87 -26.73 -0.13 -2.15 16 15 C 0.18 3.31 2.89 -67.93 -0.20 3.12 16 16 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 17 C -0.16 -2.82 9.49 37.16 0.35 -2.47 16 18 N -0.72 -17.59 4.57 -53.42 -0.24 -17.84 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 23 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 S 0.15 1.39 22.31 -107.50 -2.40 -1.01 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 1.55 6.01 -51.93 -0.31 1.24 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.64 6.75 -51.92 -0.35 0.29 16 40 H 0.39 4.44 7.66 -40.82 -0.31 4.12 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.09 1.81 7.75 -51.93 -0.40 1.41 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.38 9.96 7.80 -40.82 -0.32 9.65 16 49 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 411.97 15.07 6.21 6.21 Total: -1.00 -32.36 411.97 -9.96 -42.33 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -8.43 Total: 10.22 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: -0.46 Total: -4.31 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.06 Total: -61.49 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.40 Total: -1.01 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.36 -9.96 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317400097.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.943 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds