Wall clock time and date at job start Sat Apr 11 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47240 * 2 1 4 4 N 1.29025 * 124.91520 * 90.00147 * 3 2 1 5 5 C 1.31777 * 117.12360 * 180.02562 * 4 3 2 6 6 C 1.50707 * 122.75181 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46882 * 305.02455 * 6 5 4 8 8 O 1.21279 * 120.00114 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00046 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00117 * 179.97438 * 9 7 6 11 11 C 1.53011 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46941 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.46783 * 180.02562 * 12 11 10 14 14 C 1.36935 * 119.99832 * 270.00147 * 13 12 11 15 15 H 1.08004 * 119.99922 * 141.91460 * 14 13 12 16 16 C 1.38810 * 120.00423 * 321.91652 * 14 13 12 17 17 N 1.31628 * 119.99514 * 338.44939 * 16 14 13 18 18 Si 1.86800 * 120.00488 * 158.45210 * 16 14 13 19 19 H 1.48504 * 109.46814 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47064 * 119.99660 * 18 16 14 21 21 H 1.48492 * 109.47263 * 239.99863 * 18 16 14 22 22 C 1.46496 * 119.99941 * 90.00157 * 13 12 11 23 23 C 1.53002 * 109.46814 * 122.23901 * 22 13 12 24 24 C 1.52995 * 109.47194 * 242.23697 * 22 13 12 25 25 C 1.33637 * 114.50207 * 0.22990 * 5 4 3 26 26 S 1.70974 * 124.91646 * 269.99946 * 3 2 1 27 27 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46748 * 299.99718 * 1 2 3 29 29 H 1.08996 * 109.46955 * 59.99618 * 1 2 3 30 30 H 1.09004 * 109.47035 * 240.00087 * 2 1 3 31 31 H 1.08996 * 109.46955 * 120.00382 * 2 1 3 32 32 H 1.08999 * 109.46743 * 65.02005 * 6 5 4 33 33 H 1.08995 * 109.47201 * 185.02383 * 6 5 4 34 34 H 0.97007 * 120.00148 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47501 * 300.00049 * 10 9 7 36 36 H 1.09004 * 109.47259 * 60.00341 * 10 9 7 37 37 H 1.08999 * 109.46885 * 299.99883 * 11 10 9 38 38 H 1.08995 * 109.46861 * 60.00139 * 11 10 9 39 39 H 1.08990 * 109.47397 * 300.00320 * 12 11 10 40 40 H 1.09007 * 109.46731 * 60.00610 * 12 11 10 41 41 H 0.97007 * 119.99431 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.47273 * 2.23739 * 22 13 12 43 43 H 1.08996 * 109.47320 * 65.40177 * 23 22 13 44 44 H 1.09001 * 109.46985 * 185.40462 * 23 22 13 45 45 H 1.08999 * 109.47118 * 305.39815 * 23 22 13 46 46 H 1.09001 * 109.47312 * 60.44090 * 24 22 13 47 47 H 1.09001 * 109.47095 * 180.44484 * 24 22 13 48 48 H 1.09001 * 109.47285 * 300.44250 * 24 22 13 49 49 H 1.08006 * 126.03958 * 179.76987 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7134 3.3481 0.8794 6 6 3.0393 4.2719 2.0246 7 6 1.8445 4.3829 2.9361 8 8 0.8281 3.7724 2.6807 9 7 1.9053 5.1606 4.0352 10 6 0.7435 5.2689 4.9210 11 6 1.0749 6.2057 6.0845 12 6 -0.1387 6.3194 7.0094 13 7 0.1785 7.2168 8.1230 14 6 0.7214 6.7132 9.2749 15 1 1.4806 7.2712 9.8029 16 6 0.2963 5.4856 9.7638 17 7 -0.8754 5.0046 9.4054 18 14 1.3866 4.5163 10.9304 19 1 2.6425 5.2701 11.1754 20 1 0.6746 4.3101 12.2172 21 1 1.7094 3.1987 10.3265 22 6 -0.0853 8.6529 8.0044 23 6 -1.0246 9.0935 9.1289 24 6 1.2321 9.4238 8.1090 25 6 2.8364 3.7122 -0.4006 26 16 2.3587 2.3434 -1.4020 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8865 3.8735 2.5829 33 1 3.2922 5.2581 1.6353 34 1 2.7183 5.6486 4.2397 35 1 -0.1032 5.6680 4.3627 36 1 0.4900 4.2827 5.3100 37 1 1.9215 5.8062 6.6428 38 1 1.3287 7.1919 5.6959 39 1 -0.9850 6.7190 6.4508 40 1 -0.3928 5.3332 7.3980 41 1 -1.1724 4.1465 9.7468 42 1 -0.5509 8.8584 7.0406 43 1 -0.5217 8.9773 10.0889 44 1 -1.2974 10.1391 8.9858 45 1 -1.9240 8.4780 9.1131 46 1 1.8984 9.1156 7.3033 47 1 1.0350 10.4928 8.0286 48 1 1.7017 9.2122 9.0697 49 1 3.1715 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317708857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:31 Heat of formation + Delta-G solvation = 7.206816 kcal Electronic energy + Delta-G solvation = -26723.253859 eV Core-core repulsion = 23005.242550 eV Total energy + Delta-G solvation = -3718.011309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.39000 -38.96846 -36.74971 -34.93250 -34.45006 -32.49882 -31.84408 -31.01402 -28.99950 -28.04503 -26.17381 -25.64228 -25.08517 -23.21359 -22.10151 -20.85344 -20.30161 -19.79516 -19.48895 -17.90433 -16.79587 -16.34973 -15.87073 -15.39764 -15.34127 -14.98703 -14.77723 -14.52942 -14.18189 -14.07420 -13.77338 -13.43557 -13.31328 -13.16738 -12.80213 -12.52492 -12.43343 -12.26428 -11.87582 -11.66647 -11.59499 -11.44986 -11.37837 -11.34155 -11.27754 -10.93851 -10.74648 -10.60274 -10.38704 -10.18214 -9.93093 -9.75332 -9.66387 -9.55703 -9.51252 -9.44993 -8.88407 -8.74841 -8.44333 -6.51893 -5.75136 -3.33184 0.54438 1.19206 1.54319 2.61321 2.84619 3.36148 3.45867 3.47038 3.49743 3.82368 4.49825 4.52685 4.80377 4.85464 4.96812 4.98232 5.05175 5.19511 5.26455 5.32250 5.39432 5.49711 5.57208 5.71375 5.73580 5.83447 5.93590 5.96340 6.04127 6.08230 6.21021 6.34165 6.43678 6.45663 6.48655 6.71069 6.74409 6.78426 6.82554 6.85751 7.14776 7.22363 7.36674 7.66327 7.70475 7.74009 7.87601 8.45058 8.56990 9.23640 9.86254 10.45586 11.24757 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002151 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.822455 B =13014.043008 C =13934.884283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C 0.058 3.942 4 N -0.443 5.443 5 C 0.093 3.907 6 C -0.069 4.069 7 C 0.512 3.488 8 O -0.525 6.525 9 N -0.728 5.728 10 C 0.123 3.877 11 C -0.144 4.144 12 C 0.152 3.848 13 N -0.579 5.579 14 C -0.252 4.252 15 H 0.059 0.941 16 C 0.013 3.987 17 N -0.885 5.885 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.288 1.288 22 C 0.162 3.838 23 C -0.146 4.146 24 C -0.153 4.153 25 C -0.260 4.260 26 S 0.101 5.899 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.398 0.602 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.024 0.976 40 H 0.094 0.906 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.028 0.972 45 H 0.051 0.949 46 H 0.042 0.958 47 H 0.035 0.965 48 H 0.053 0.947 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 -3.236 -21.475 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.221 4.221 4 N -0.157 5.157 5 C -0.039 4.039 6 C -0.112 4.112 7 C 0.296 3.704 8 O -0.401 6.401 9 N -0.380 5.380 10 C -0.001 4.001 11 C -0.185 4.185 12 C 0.025 3.975 13 N -0.300 5.300 14 C -0.382 4.382 15 H 0.077 0.923 16 C -0.188 4.188 17 N -0.527 5.527 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.218 1.218 21 H -0.215 1.215 22 C 0.055 3.945 23 C -0.204 4.204 24 C -0.212 4.212 25 C -0.399 4.399 26 S 0.357 5.643 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.231 0.769 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.042 0.958 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.054 0.946 48 H 0.072 0.928 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.204 -4.253 -22.161 23.688 hybrid contribution 1.203 0.374 1.457 1.926 sum 8.407 -3.879 -20.705 22.680 Atomic orbital electron populations 1.21771 0.93307 1.02481 1.03072 1.20223 0.96971 0.87486 1.04039 1.27085 1.02854 1.01736 0.90452 1.65987 1.12874 1.05637 1.31155 1.19579 0.99994 0.91315 0.93041 1.20265 0.98432 0.98915 0.93581 1.20223 0.89219 0.79345 0.81615 1.90729 1.32207 1.44219 1.72918 1.46141 1.17784 1.48659 1.25428 1.21437 0.87180 1.00854 0.90597 1.22486 1.03474 0.97102 0.95432 1.20777 0.91080 0.98794 0.86831 1.43850 1.73035 1.00619 1.12457 1.18918 1.14731 1.02956 1.01614 0.92310 1.25178 0.95086 1.00690 0.97821 1.70020 1.16844 1.19573 1.46287 0.86427 0.80671 0.80263 0.80612 1.20178 1.21755 1.21490 1.20408 0.92537 0.85841 0.95690 1.22061 1.00352 0.97456 1.00575 1.22179 0.99752 0.97758 1.01557 1.26722 1.13210 1.04328 0.95653 1.83830 1.61172 1.05920 1.13409 0.91445 0.91415 0.92526 0.89844 0.88742 0.87215 0.87388 0.76879 0.92226 0.91640 0.91691 0.93313 0.95776 0.88837 0.93682 0.93755 0.92781 0.95314 0.93011 0.93910 0.94630 0.92785 0.80615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.90 37.16 0.37 -0.93 16 2 C -0.05 -0.40 6.52 -27.88 -0.18 -0.59 16 3 C 0.06 0.67 6.64 -13.46 -0.09 0.58 16 4 N -0.44 -6.33 9.68 -8.06 -0.08 -6.41 16 5 C 0.09 1.16 5.63 -84.22 -0.47 0.69 16 6 C -0.07 -0.73 6.19 -29.03 -0.18 -0.91 16 7 C 0.51 7.63 7.79 -10.99 -0.09 7.54 16 8 O -0.53 -10.23 15.44 5.56 0.09 -10.15 16 9 N -0.73 -10.16 5.56 -60.29 -0.33 -10.50 16 10 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 11 C -0.14 -2.64 5.65 -26.72 -0.15 -2.79 16 12 C 0.15 3.41 5.27 -4.04 -0.02 3.39 16 13 N -0.58 -13.68 2.36 -165.67 -0.39 -14.07 16 14 C -0.25 -6.57 8.23 -15.06 -0.12 -6.70 16 15 H 0.06 1.55 6.95 -52.48 -0.36 1.19 16 16 C 0.01 0.34 4.94 -17.43 -0.09 0.25 16 17 N -0.88 -25.05 11.52 55.49 0.64 -24.41 16 18 Si 0.89 21.32 29.61 -169.99 -5.03 16.29 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.16 3.32 3.36 -67.93 -0.23 3.09 16 23 C -0.15 -2.95 9.03 37.16 0.34 -2.61 16 24 C -0.15 -2.77 9.20 37.15 0.34 -2.43 16 25 C -0.26 -2.60 11.07 29.12 0.32 -2.27 16 26 S 0.10 0.94 23.18 -107.50 -2.49 -1.55 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.11 0.77 8.03 -51.93 -0.42 0.36 16 34 H 0.40 4.36 8.47 -40.82 -0.35 4.01 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.02 0.52 7.90 -51.93 -0.41 0.11 16 40 H 0.09 2.42 5.56 -51.93 -0.29 2.13 16 41 H 0.25 6.98 8.31 -40.82 -0.34 6.65 16 42 H 0.04 0.86 7.78 -51.93 -0.40 0.46 16 43 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 44 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 1.04 7.06 -51.93 -0.37 0.68 16 49 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 413.69 15.07 6.23 6.23 Total: -1.00 -32.83 413.69 -10.13 -42.95 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.48 Total: 3.24 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.28 Total: -1.62 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.16 Total: -55.39 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.15 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.83 -10.13 -42.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317708857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.161 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds