Wall clock time and date at job start Sat Apr 11 2020 05:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47240 * 2 1 4 4 N 1.29025 * 124.91520 * 90.00147 * 3 2 1 5 5 C 1.31777 * 117.12360 * 180.02562 * 4 3 2 6 6 C 1.50707 * 122.75181 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46882 * 305.02455 * 6 5 4 8 8 O 1.21279 * 120.00114 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00046 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00117 * 179.97438 * 9 7 6 11 11 C 1.53011 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.46941 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.46783 * 180.02562 * 12 11 10 14 14 C 1.36935 * 119.99832 * 270.00147 * 13 12 11 15 15 H 1.08004 * 119.99922 * 141.91460 * 14 13 12 16 16 C 1.38810 * 120.00423 * 321.91652 * 14 13 12 17 17 N 1.31628 * 119.99514 * 338.44939 * 16 14 13 18 18 Si 1.86800 * 120.00488 * 158.45210 * 16 14 13 19 19 H 1.48504 * 109.46814 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47064 * 119.99660 * 18 16 14 21 21 H 1.48492 * 109.47263 * 239.99863 * 18 16 14 22 22 C 1.46496 * 119.99941 * 90.00157 * 13 12 11 23 23 C 1.53002 * 109.46814 * 122.23901 * 22 13 12 24 24 C 1.52995 * 109.47194 * 242.23697 * 22 13 12 25 25 C 1.33637 * 114.50207 * 0.22990 * 5 4 3 26 26 S 1.70974 * 124.91646 * 269.99946 * 3 2 1 27 27 H 1.08998 * 109.47245 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46748 * 299.99718 * 1 2 3 29 29 H 1.08996 * 109.46955 * 59.99618 * 1 2 3 30 30 H 1.09004 * 109.47035 * 240.00087 * 2 1 3 31 31 H 1.08996 * 109.46955 * 120.00382 * 2 1 3 32 32 H 1.08999 * 109.46743 * 65.02005 * 6 5 4 33 33 H 1.08995 * 109.47201 * 185.02383 * 6 5 4 34 34 H 0.97007 * 120.00148 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47501 * 300.00049 * 10 9 7 36 36 H 1.09004 * 109.47259 * 60.00341 * 10 9 7 37 37 H 1.08999 * 109.46885 * 299.99883 * 11 10 9 38 38 H 1.08995 * 109.46861 * 60.00139 * 11 10 9 39 39 H 1.08990 * 109.47397 * 300.00320 * 12 11 10 40 40 H 1.09007 * 109.46731 * 60.00610 * 12 11 10 41 41 H 0.97007 * 119.99431 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.47273 * 2.23739 * 22 13 12 43 43 H 1.08996 * 109.47320 * 65.40177 * 23 22 13 44 44 H 1.09001 * 109.46985 * 185.40462 * 23 22 13 45 45 H 1.08999 * 109.47118 * 305.39815 * 23 22 13 46 46 H 1.09001 * 109.47312 * 60.44090 * 24 22 13 47 47 H 1.09001 * 109.47095 * 180.44484 * 24 22 13 48 48 H 1.09001 * 109.47285 * 300.44250 * 24 22 13 49 49 H 1.08006 * 126.03958 * 179.76987 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7134 3.3481 0.8794 6 6 3.0393 4.2719 2.0246 7 6 1.8445 4.3829 2.9361 8 8 0.8281 3.7724 2.6807 9 7 1.9053 5.1606 4.0352 10 6 0.7435 5.2689 4.9210 11 6 1.0749 6.2057 6.0845 12 6 -0.1387 6.3194 7.0094 13 7 0.1785 7.2168 8.1230 14 6 0.7214 6.7132 9.2749 15 1 1.4806 7.2712 9.8029 16 6 0.2963 5.4856 9.7638 17 7 -0.8754 5.0046 9.4054 18 14 1.3866 4.5163 10.9304 19 1 2.6425 5.2701 11.1754 20 1 0.6746 4.3101 12.2172 21 1 1.7094 3.1987 10.3265 22 6 -0.0853 8.6529 8.0044 23 6 -1.0246 9.0935 9.1289 24 6 1.2321 9.4238 8.1090 25 6 2.8364 3.7122 -0.4006 26 16 2.3587 2.3434 -1.4020 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8865 3.8735 2.5829 33 1 3.2922 5.2581 1.6353 34 1 2.7183 5.6486 4.2397 35 1 -0.1032 5.6680 4.3627 36 1 0.4900 4.2827 5.3100 37 1 1.9215 5.8062 6.6428 38 1 1.3287 7.1919 5.6959 39 1 -0.9850 6.7190 6.4508 40 1 -0.3928 5.3332 7.3980 41 1 -1.1724 4.1465 9.7468 42 1 -0.5509 8.8584 7.0406 43 1 -0.5217 8.9773 10.0889 44 1 -1.2974 10.1391 8.9858 45 1 -1.9240 8.4780 9.1131 46 1 1.8984 9.1156 7.3033 47 1 1.0350 10.4928 8.0286 48 1 1.7017 9.2122 9.0697 49 1 3.1715 4.6747 -0.7580 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317708857.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:30 Heat of formation + Delta-G solvation = -13.224766 kcal Electronic energy + Delta-G solvation = -26724.139839 eV Core-core repulsion = 23005.242550 eV Total energy + Delta-G solvation = -3718.897289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31585 -40.08066 -38.48686 -36.30266 -35.22480 -34.27450 -33.30904 -32.11818 -30.51734 -29.09355 -27.72534 -26.99781 -26.28092 -24.81129 -22.98494 -22.36815 -21.48317 -21.26694 -20.61151 -18.79620 -18.19520 -17.82404 -17.07208 -16.84054 -16.60862 -16.26293 -15.97911 -15.66290 -15.56090 -15.32064 -14.99507 -14.60472 -14.55701 -14.40678 -14.06213 -13.94251 -13.50733 -13.24463 -13.20315 -13.15182 -13.00105 -12.84392 -12.72960 -12.57029 -12.47877 -12.35905 -12.29530 -12.10893 -12.04476 -11.89891 -11.70319 -11.30965 -11.23567 -10.91723 -10.49684 -10.46871 -10.29961 -10.05898 -9.63931 -8.48059 -7.76254 -5.37982 -0.22416 0.46961 0.77367 1.43424 1.48212 1.56191 1.70418 1.74689 2.37563 2.53925 3.10937 3.30306 3.62805 3.73279 4.02151 4.10059 4.17668 4.21121 4.28974 4.33321 4.37112 4.37531 4.50015 4.53607 4.64023 4.65529 4.72902 4.76562 4.81678 4.92053 4.97909 4.99656 5.03077 5.11207 5.17118 5.17454 5.22013 5.24321 5.29510 5.49190 5.50853 5.63461 5.69637 5.76604 5.89598 6.54364 6.62924 6.90234 7.24500 7.33581 7.95305 8.47905 9.19073 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.002151 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.822455 B =13014.043008 C =13934.884283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.047 4.047 3 C 0.032 3.968 4 N -0.491 5.491 5 C 0.058 3.942 6 C -0.059 4.059 7 C 0.507 3.493 8 O -0.578 6.578 9 N -0.717 5.717 10 C 0.137 3.863 11 C -0.119 4.119 12 C 0.151 3.849 13 N -0.593 5.593 14 C -0.242 4.242 15 H 0.057 0.943 16 C -0.039 4.039 17 N -0.918 5.918 18 Si 0.945 3.055 19 H -0.265 1.265 20 H -0.296 1.296 21 H -0.295 1.295 22 C 0.152 3.848 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.255 4.255 26 S 0.148 5.852 27 H 0.088 0.912 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.416 0.584 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.056 0.944 41 H 0.246 0.754 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.049 0.951 47 H 0.066 0.934 48 H 0.036 0.964 49 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.436 -1.477 -23.638 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.246 4.246 4 N -0.205 5.205 5 C -0.074 4.074 6 C -0.101 4.101 7 C 0.294 3.706 8 O -0.457 6.457 9 N -0.370 5.370 10 C 0.012 3.988 11 C -0.159 4.159 12 C 0.024 3.976 13 N -0.314 5.314 14 C -0.373 4.373 15 H 0.075 0.925 16 C -0.235 4.235 17 N -0.563 5.563 18 Si 0.774 3.226 19 H -0.189 1.189 20 H -0.223 1.223 21 H -0.222 1.222 22 C 0.046 3.954 23 C -0.196 4.196 24 C -0.200 4.200 25 C -0.394 4.394 26 S 0.403 5.597 27 H 0.106 0.894 28 H 0.050 0.950 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.168 0.832 34 H 0.253 0.747 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.084 0.916 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.055 0.945 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 9.480 -2.455 -24.329 26.226 hybrid contribution 0.459 -0.105 2.042 2.096 sum 9.939 -2.559 -22.287 24.537 Atomic orbital electron populations 1.21732 0.93600 1.03353 1.01486 1.20344 0.96645 0.86723 1.05109 1.27490 1.03069 1.02802 0.91242 1.65994 1.14337 1.07057 1.33139 1.19901 1.01632 0.91379 0.94475 1.20340 0.96256 1.00995 0.92519 1.21065 0.89900 0.77960 0.81654 1.90711 1.34622 1.46178 1.74142 1.45949 1.17493 1.48773 1.24759 1.21042 0.88403 0.98765 0.90633 1.22107 1.00790 0.98367 0.94686 1.20666 0.92923 0.96762 0.87218 1.44082 1.73085 1.02118 1.12149 1.19069 1.13885 1.02648 1.01728 0.92547 1.25787 0.96058 1.01936 0.99768 1.70154 1.18436 1.19609 1.48086 0.85556 0.79604 0.78782 0.78623 1.18899 1.22324 1.22224 1.20670 0.94159 0.84230 0.96344 1.21978 0.98810 0.99192 0.99661 1.22022 0.97922 0.99207 1.00853 1.27168 1.11481 1.05686 0.95059 1.83585 1.59798 1.04782 1.11499 0.89360 0.95002 0.91957 0.86830 0.89580 0.85559 0.83241 0.74741 0.92702 0.94751 0.92814 0.91030 0.95751 0.92636 0.94435 0.92390 0.94554 0.91634 0.95934 0.93196 0.91536 0.94458 0.77457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.90 71.98 0.71 -1.83 16 2 C -0.05 -0.82 6.52 29.85 0.19 -0.63 16 3 C 0.03 0.73 6.64 88.52 0.59 1.32 16 4 N -0.49 -14.10 9.68 -179.40 -1.74 -15.84 16 5 C 0.06 1.37 5.63 41.52 0.23 1.61 16 6 C -0.06 -1.13 6.19 29.10 0.18 -0.95 16 7 C 0.51 14.85 7.79 87.66 0.68 15.53 16 8 O -0.58 -23.17 15.44 -3.03 -0.05 -23.22 16 9 N -0.72 -19.28 5.56 -463.07 -2.57 -21.85 16 10 C 0.14 4.70 5.67 86.38 0.49 5.19 16 11 C -0.12 -4.29 5.65 30.60 0.17 -4.11 16 12 C 0.15 6.88 5.27 86.38 0.46 7.33 16 13 N -0.59 -27.95 2.36 -678.05 -1.60 -29.55 16 14 C -0.24 -12.70 8.23 84.03 0.69 -12.01 16 15 H 0.06 2.96 6.95 -2.91 -0.02 2.94 16 16 C -0.04 -2.12 4.94 84.86 0.42 -1.70 16 17 N -0.92 -53.97 11.52 21.65 0.25 -53.72 16 18 Si 0.95 44.71 29.61 68.60 2.03 46.74 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 22 C 0.15 5.98 3.36 44.99 0.15 6.13 16 23 C -0.14 -5.43 9.03 71.98 0.65 -4.78 16 24 C -0.14 -4.69 9.20 71.98 0.66 -4.03 16 25 C -0.25 -4.44 11.07 66.78 0.74 -3.70 16 26 S 0.15 2.45 23.18 -56.49 -1.31 1.14 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.15 1.53 8.03 -2.39 -0.02 1.51 16 34 H 0.42 8.13 8.47 -92.70 -0.79 7.34 16 35 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.02 1.07 7.90 -2.39 -0.02 1.05 16 40 H 0.06 3.00 5.56 -2.38 -0.01 2.99 16 41 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 42 H 0.06 2.12 7.78 -2.39 -0.02 2.11 16 43 H 0.04 1.53 7.80 -2.39 -0.02 1.51 16 44 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.04 1.35 7.06 -2.39 -0.02 1.33 16 49 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -75.41 413.69 2.18 -73.23 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.14 Total: 19.71 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 7.03 Total: 3.37 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.66 Total: -120.96 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.05 Total: -23.22 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.31 Total: 1.14 kcal Total: -75.41 2.18 -73.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317708857.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.003 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds