Wall clock time and date at job start Sat Apr 11 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21680 * 120.00123 * 359.97438 * 7 6 5 9 9 C 1.46682 * 119.99579 * 179.97438 * 7 6 5 10 10 S 1.76212 * 126.13370 * 359.68724 * 9 7 6 11 11 C 1.70956 * 90.31480 * 179.97438 * 10 9 7 12 12 C 1.50704 * 124.80437 * 180.10367 * 11 10 9 13 13 N 1.29428 * 110.38962 * 0.34835 * 11 10 9 14 14 C 1.30944 * 117.36754 * 359.72689 * 13 11 10 15 15 C 1.50693 * 122.90609 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47204 * 269.99750 * 15 14 13 17 17 C 1.52997 * 109.47128 * 64.99852 * 16 15 14 18 18 C 1.52994 * 109.47372 * 185.00464 * 16 15 14 19 19 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 3 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 3 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 3 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 29 29 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 30 30 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 32 32 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 33 33 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 34 34 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 35 35 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 36 36 H 1.08997 * 109.47390 * 270.27785 * 12 11 10 37 37 H 1.09002 * 109.46881 * 30.27825 * 12 11 10 38 38 H 1.09003 * 109.47115 * 150.27813 * 12 11 10 39 39 H 1.09003 * 109.47321 * 29.99631 * 15 14 13 40 40 H 1.08997 * 109.47129 * 149.99450 * 15 14 13 41 41 H 1.09006 * 109.46952 * 305.00150 * 16 15 14 42 42 H 1.09002 * 109.47183 * 180.02562 * 17 16 15 43 43 H 1.09001 * 109.47286 * 299.99827 * 17 16 15 44 44 H 1.08992 * 109.47079 * 60.00289 * 17 16 15 45 45 H 1.09001 * 109.47840 * 59.99511 * 18 16 15 46 46 H 1.09002 * 109.47272 * 180.02562 * 18 16 15 47 47 H 1.09006 * 109.46825 * 299.99763 * 18 16 15 48 48 H 0.97000 * 119.99792 * 264.99726 * 19 3 2 49 49 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1661 2.1452 0.2577 9 6 5.8846 4.4370 -0.0346 10 16 4.9053 5.8791 -0.2923 11 6 6.3135 6.8484 -0.2841 12 6 6.3285 8.3452 -0.4588 13 7 7.3653 6.1141 -0.1118 14 6 7.1834 4.8247 0.0254 15 6 8.3183 3.8553 0.2328 16 6 8.8194 3.3587 -1.1247 17 6 9.4235 4.5283 -1.9044 18 6 9.8858 2.2824 -0.9122 19 7 1.6524 2.0975 -1.2518 20 6 0.4157 2.6734 -1.3688 21 1 -0.2740 2.6452 -0.5381 22 6 0.0506 3.2991 -2.5530 23 7 0.8912 3.3339 -3.5651 24 14 -1.6337 4.0915 -2.7099 25 1 -2.3839 3.9152 -1.4404 26 1 -1.4746 5.5403 -2.9943 27 1 -2.3819 3.4484 -3.8198 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5138 0.8899 33 1 3.8500 1.0377 1.0960 34 1 3.9955 0.8311 -0.6660 35 1 3.4411 3.5483 -0.1315 36 1 6.4154 8.5865 -1.5182 37 1 5.4035 8.7662 -0.0649 38 1 7.1775 8.7654 0.0803 39 1 9.1313 4.3550 0.7596 40 1 7.9693 3.0082 0.8234 41 1 7.9861 2.9383 -1.6880 42 1 9.7801 4.1746 -2.8718 43 1 8.6637 5.2950 -2.0559 44 1 10.2566 4.9486 -1.3412 45 1 9.4554 1.4490 -0.3568 46 1 10.2431 1.9289 -1.8795 47 1 10.7190 2.7027 -0.3490 48 1 2.2720 2.1232 -1.9978 49 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318543837.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:37 Heat of formation + Delta-G solvation = -26.941975 kcal Electronic energy + Delta-G solvation = -27852.128606 eV Core-core repulsion = 24132.636494 eV Total energy + Delta-G solvation = -3719.492112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58652 -40.26823 -38.26911 -37.05531 -35.28865 -34.17544 -33.34859 -31.52658 -30.38710 -29.47083 -28.31613 -27.97593 -25.64139 -24.33935 -23.99512 -22.39694 -21.65173 -21.15027 -20.39789 -19.18110 -19.05329 -17.84872 -17.03142 -16.90773 -16.54419 -16.02431 -15.92314 -15.60040 -15.51432 -15.29931 -14.89345 -14.79063 -14.58010 -14.38628 -14.17886 -13.82366 -13.79890 -13.35053 -13.24695 -13.09624 -12.99508 -12.81420 -12.79834 -12.71499 -12.52910 -12.35490 -12.07308 -11.89798 -11.85603 -11.82197 -11.63174 -11.57629 -11.33470 -11.11048 -10.91162 -10.70700 -10.57150 -10.11423 -9.71476 -8.98066 -7.87086 -5.14600 -0.80075 0.15673 0.56327 1.35939 1.49296 1.51993 1.59428 2.05576 2.14873 2.60023 2.97816 3.46892 3.72632 3.84204 3.86797 3.91746 3.97533 4.00453 4.13745 4.28604 4.36608 4.46889 4.55099 4.55963 4.64349 4.71496 4.72408 4.74462 4.82310 4.83796 4.86594 4.98478 4.99713 5.07808 5.08621 5.11700 5.19317 5.20471 5.31504 5.41318 5.44822 5.45359 5.55502 5.62012 5.72846 6.32677 6.38675 6.58661 7.05260 7.40686 8.11271 8.36674 9.35962 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010953 B = 0.003566 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.725165 B = 7850.319608 C = 9387.198895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.058 0.942 5 C 0.123 3.877 6 N -0.708 5.708 7 C 0.591 3.409 8 O -0.553 6.553 9 C -0.329 4.329 10 S 0.176 5.824 11 C 0.067 3.933 12 C -0.082 4.082 13 N -0.489 5.489 14 C 0.154 3.846 15 C -0.047 4.047 16 C -0.081 4.081 17 C -0.137 4.137 18 C -0.137 4.137 19 N -0.728 5.728 20 C -0.217 4.217 21 H 0.081 0.919 22 C -0.069 4.069 23 N -0.967 5.967 24 Si 0.957 3.043 25 H -0.266 1.266 26 H -0.297 1.297 27 H -0.303 1.303 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.405 0.595 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.041 0.959 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.371 0.629 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.332 5.784 9.250 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.076 0.924 5 C -0.001 4.001 6 N -0.359 5.359 7 C 0.378 3.622 8 O -0.435 6.435 9 C -0.453 4.453 10 S 0.434 5.566 11 C -0.208 4.208 12 C -0.142 4.142 13 N -0.205 5.205 14 C 0.015 3.985 15 C -0.087 4.087 16 C -0.100 4.100 17 C -0.194 4.194 18 C -0.194 4.194 19 N -0.369 5.369 20 C -0.348 4.348 21 H 0.099 0.901 22 C -0.262 4.262 23 N -0.618 5.618 24 Si 0.788 3.212 25 H -0.190 1.190 26 H -0.224 1.224 27 H -0.231 1.231 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.241 0.759 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.203 0.797 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 13.035 5.709 9.333 17.018 hybrid contribution -0.677 0.026 -0.885 1.114 sum 12.359 5.734 8.449 16.031 Atomic orbital electron populations 1.21695 0.95892 1.00621 1.01807 1.21973 0.96690 0.97073 1.01141 1.20734 0.90695 0.93540 0.89546 0.92366 1.21662 0.94583 0.81910 1.01918 1.45901 1.06425 1.11131 1.72394 1.16880 0.82452 0.86386 0.76520 1.90718 1.56024 1.45109 1.51623 1.25447 0.98319 0.98688 1.22832 1.84336 1.11323 0.96631 1.64289 1.28175 0.90683 1.03579 0.98387 1.20765 1.06026 0.82061 1.05303 1.66181 1.31763 1.04142 1.18403 1.20789 0.93115 0.90522 0.94113 1.20540 0.93429 0.95796 0.98921 1.20908 0.97945 0.96617 0.94552 1.21783 1.00629 0.97100 0.99897 1.21735 0.97936 0.97592 1.02140 1.42590 1.15858 1.66173 1.12278 1.19533 0.92430 1.25245 0.97635 0.90148 1.25345 1.00852 1.03349 0.96637 1.69816 1.36778 1.50813 1.04408 0.85312 0.80969 0.77559 0.77404 1.19024 1.22424 1.23077 0.93212 0.93247 0.92812 0.93540 0.90535 0.89620 0.92650 0.75924 0.87756 0.87796 0.87657 0.89182 0.89182 0.94068 0.92388 0.94288 0.91380 0.93107 0.91971 0.91121 0.79665 0.94438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 9.18 71.98 0.66 -4.08 16 2 C -0.13 -4.11 5.61 30.59 0.17 -3.94 16 3 C 0.16 5.80 2.59 44.99 0.12 5.92 16 4 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 5 C 0.12 4.09 5.23 86.38 0.45 4.54 16 6 N -0.71 -24.58 5.38 -467.07 -2.51 -27.10 16 7 C 0.59 20.94 7.78 86.45 0.67 21.61 16 8 O -0.55 -21.09 14.27 -4.29 -0.06 -21.15 16 9 C -0.33 -10.54 6.48 23.88 0.15 -10.39 16 10 S 0.18 4.76 22.31 -56.49 -1.26 3.50 16 11 C 0.07 1.55 7.39 88.46 0.65 2.20 16 12 C -0.08 -1.12 10.46 71.24 0.75 -0.37 16 13 N -0.49 -13.18 9.64 -178.28 -1.72 -14.90 16 14 C 0.15 4.57 5.32 42.09 0.22 4.79 16 15 C -0.05 -1.28 4.50 29.84 0.13 -1.15 16 16 C -0.08 -2.10 2.91 -10.80 -0.03 -2.13 16 17 C -0.14 -3.17 8.97 71.98 0.65 -2.52 16 18 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 19 N -0.73 -32.89 4.51 -322.93 -1.46 -34.34 16 20 C -0.22 -10.77 7.75 84.04 0.65 -10.12 16 21 H 0.08 3.85 7.32 -2.91 -0.02 3.83 16 22 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 23 N -0.97 -56.21 13.06 21.65 0.28 -55.92 16 24 Si 0.96 43.83 29.55 68.60 2.03 45.86 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 2.00 5.99 -2.39 -0.01 1.98 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.40 14.54 7.32 -92.71 -0.68 13.86 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 2.72 6.01 -2.39 -0.01 2.71 16 41 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.04 1.02 6.75 -2.39 -0.02 1.01 16 44 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 48 H 0.37 18.84 7.80 -92.71 -0.72 18.11 16 49 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 Total: -1.00 -62.79 406.76 1.23 -61.56 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.45 Total: 43.62 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 6.38 Total: -1.12 kcal Atomic # 7 Polarization: -126.86 SS G_CDS: -5.41 Total: -132.27 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.06 Total: -21.15 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.26 Total: 3.50 kcal Total: -62.79 1.23 -61.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318543837.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.616 kcal (2) G-P(sol) polarization free energy of solvation -62.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds