Wall clock time and date at job start Sat Apr 11 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29033 * 124.91344 * 2 1 4 4 C 1.31784 * 117.11936 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74609 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46943 * 305.02570 * 5 4 3 7 7 C 1.50699 * 109.47129 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00090 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00383 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00531 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47008 * 325.00296 * 10 9 7 12 12 C 1.52996 * 109.47509 * 205.00222 * 10 9 7 13 13 N 1.46498 * 109.47059 * 54.99655 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47294 * 90.00155 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00015 * 18 16 14 21 21 H 1.48496 * 109.47166 * 329.99846 * 18 16 14 22 22 C 1.53004 * 109.47171 * 84.99693 * 10 9 7 23 23 C 1.52999 * 109.46989 * 295.00630 * 22 10 9 24 24 C 1.53000 * 109.46823 * 174.99871 * 23 22 10 25 25 C 1.53002 * 109.47150 * 294.99387 * 23 22 10 26 26 C 1.33631 * 114.50317 * 0.23436 * 4 3 2 27 27 S 1.70978 * 124.91868 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46830 * 89.99760 * 1 2 3 29 29 H 1.08996 * 109.46806 * 210.00068 * 1 2 3 30 30 H 1.08997 * 109.47007 * 330.00015 * 1 2 3 31 31 H 1.08993 * 109.47190 * 185.02772 * 5 4 3 32 32 H 1.08997 * 109.47124 * 65.02222 * 5 4 3 33 33 H 1.09001 * 109.47603 * 60.00270 * 6 5 4 34 34 H 1.09005 * 109.47626 * 300.00183 * 6 5 4 35 35 H 0.97009 * 119.99558 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47066 * 294.99922 * 12 10 9 37 37 H 1.08994 * 109.46974 * 175.00070 * 12 10 9 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46462 * 55.00239 * 22 10 9 41 41 H 1.08995 * 109.46930 * 175.00449 * 22 10 9 42 42 H 1.08997 * 109.47498 * 54.99671 * 23 22 10 43 43 H 1.08997 * 109.47247 * 59.99646 * 24 23 22 44 44 H 1.09000 * 109.47485 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.47094 * 299.99726 * 24 23 22 46 46 H 1.08993 * 109.46832 * 180.02562 * 25 23 22 47 47 H 1.08997 * 109.47152 * 300.00495 * 25 23 22 48 48 H 1.09001 * 109.46642 * 60.00173 * 25 23 22 49 49 H 1.08002 * 126.03828 * 179.76601 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0247 0.0000 6 6 4.2334 2.9495 -1.1819 7 6 5.2133 4.0944 -1.1829 8 8 6.0653 4.1641 -0.3226 9 7 5.1429 5.0410 -2.1397 10 6 6.0951 6.1543 -2.1403 11 1 6.3310 6.4312 -1.1128 12 6 5.4776 7.3533 -2.8626 13 7 4.1910 7.6854 -2.2457 14 6 3.4528 8.7349 -2.7242 15 1 3.8171 9.3149 -3.5592 16 6 2.2364 9.0531 -2.1360 17 7 1.7928 8.3464 -1.1181 18 14 1.2292 10.4842 -2.7892 19 1 0.3077 9.9987 -3.8478 20 1 0.4401 11.0805 -1.6815 21 1 2.1388 11.5112 -3.3575 22 6 7.3763 5.7293 -2.8607 23 6 8.0598 4.6123 -2.0695 24 6 9.2718 4.1017 -2.8512 25 6 8.5185 5.1545 -0.7142 26 6 3.9354 -0.4005 -0.0040 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5449 1.6354 -0.0894 32 1 4.4369 2.5835 0.9311 33 1 3.2193 3.3389 -1.0925 34 1 4.3272 2.3907 -2.1132 35 1 4.4612 4.9854 -2.8276 36 1 5.3236 7.1050 -3.9128 37 1 6.1488 8.2086 -2.7861 38 1 3.8640 7.1646 -1.4955 39 1 0.9426 8.5686 -0.7073 40 1 7.1289 5.3684 -3.8590 41 1 8.0492 6.5831 -2.9393 42 1 7.3565 3.7941 -1.9143 43 1 9.9751 4.9199 -3.0063 44 1 9.7586 3.3057 -2.2877 45 1 8.9451 3.7155 -3.8167 46 1 9.0058 4.3589 -0.1508 47 1 9.2217 5.9726 -0.8694 48 1 7.6549 5.5183 -0.1574 49 1 4.9546 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319630108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:40 Heat of formation + Delta-G solvation = -5.443071 kcal Electronic energy + Delta-G solvation = -27499.915867 eV Core-core repulsion = 23781.356017 eV Total energy + Delta-G solvation = -3718.559849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.23376 -39.64738 -36.76789 -34.91427 -33.88297 -33.36116 -31.54241 -30.89106 -29.13139 -28.38371 -26.86204 -25.59475 -25.22685 -22.92265 -22.49117 -20.77429 -19.93143 -19.81539 -19.61064 -17.64515 -17.25992 -16.70702 -15.85777 -15.63532 -15.34725 -15.13376 -14.68562 -14.49225 -14.00497 -13.76673 -13.69797 -13.41499 -13.27272 -13.09159 -12.97886 -12.86595 -12.60917 -12.38007 -12.10005 -12.00500 -11.91141 -11.79466 -11.52755 -11.43111 -11.04599 -10.94756 -10.93539 -10.79844 -10.48767 -10.20844 -10.19564 -9.96496 -9.74880 -9.69776 -9.56897 -9.33987 -8.90072 -8.81318 -8.50426 -6.93984 -5.76245 -3.06027 0.55074 1.19103 1.55689 2.64731 3.05337 3.43122 3.48503 3.50384 3.62960 3.91676 4.57595 4.73764 4.93690 4.99820 5.04848 5.08797 5.15330 5.20741 5.22317 5.22476 5.34201 5.50998 5.55320 5.60397 5.66559 5.68829 5.71066 5.76395 5.90520 5.97902 6.00366 6.07035 6.10037 6.13265 6.15194 6.21550 6.25638 6.33720 6.48552 6.53572 6.70541 6.71167 6.88921 7.05234 7.64166 7.69317 7.98469 8.41558 8.67192 9.53342 10.09752 10.45259 11.45914 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.003316 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3733.170241 B = 8441.669097 C =11738.524690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.464 5.464 4 C 0.079 3.921 5 C -0.026 4.026 6 C -0.134 4.134 7 C 0.514 3.486 8 O -0.541 6.541 9 N -0.710 5.710 10 C 0.136 3.864 11 H 0.090 0.910 12 C 0.144 3.856 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.011 4.011 17 N -0.929 5.929 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.122 4.122 23 C -0.092 4.092 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.261 4.261 27 S 0.097 5.903 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.403 0.597 36 H 0.022 0.978 37 H 0.031 0.969 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.037 0.963 48 H 0.077 0.923 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 -21.022 -0.303 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.224 4.224 3 N -0.179 5.179 4 C -0.053 4.053 5 C -0.066 4.066 6 C -0.174 4.174 7 C 0.301 3.699 8 O -0.420 6.420 9 N -0.360 5.360 10 C 0.031 3.969 11 H 0.108 0.892 12 C 0.016 3.984 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.161 4.161 23 C -0.110 4.110 24 C -0.204 4.204 25 C -0.194 4.194 26 C -0.400 4.400 27 S 0.351 5.649 28 H 0.106 0.894 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.221 0.779 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.096 0.904 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.675 -21.382 0.221 22.123 hybrid contribution -0.443 1.296 -0.518 1.464 sum 5.232 -20.086 -0.297 20.758 Atomic orbital electron populations 1.20474 0.85121 1.04308 1.04065 1.27106 1.01835 0.90680 1.02789 1.66126 1.04573 1.31369 1.15875 1.20393 0.90133 0.94330 1.00408 1.19915 0.95314 0.91719 0.99652 1.21554 1.00921 0.95311 0.99634 1.20469 0.84725 0.83368 0.81339 1.90665 1.36910 1.77042 1.37352 1.45980 1.34791 1.24859 1.30390 1.21341 0.87989 0.86093 1.01450 0.89206 1.20959 0.89033 0.93241 0.95192 1.42346 1.18359 1.37425 1.39421 1.19208 0.99774 1.06416 1.12021 0.91228 1.24745 0.98160 0.99534 0.98331 1.69671 1.21514 1.41637 1.24940 0.86203 0.80201 0.82132 0.77702 1.21745 1.21783 1.20802 1.22014 0.96461 0.98763 0.98834 1.21132 0.96476 0.98294 0.95114 1.21875 0.98361 1.00509 0.99620 1.21825 1.01344 0.99552 0.96725 1.26797 1.02940 0.95634 1.14633 1.83893 0.98409 1.13339 1.69246 0.89437 0.90205 0.88955 0.89628 0.89120 0.87769 0.89649 0.76255 0.95977 0.95102 0.77946 0.93494 0.92109 0.91312 0.90632 0.93169 0.93311 0.93407 0.93937 0.94433 0.90429 0.80636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 36.01 0.38 -0.23 16 2 C 0.05 0.58 7.39 -13.45 -0.10 0.48 16 3 N -0.46 -6.21 10.34 -8.05 -0.08 -6.30 16 4 C 0.08 0.97 6.08 -84.22 -0.51 0.46 16 5 C -0.03 -0.32 5.00 -27.88 -0.14 -0.46 16 6 C -0.13 -1.75 5.60 -27.89 -0.16 -1.91 16 7 C 0.51 7.91 6.39 -10.99 -0.07 7.84 16 8 O -0.54 -9.28 10.94 5.56 0.06 -9.22 16 9 N -0.71 -11.09 4.47 -53.81 -0.24 -11.33 16 10 C 0.14 2.25 2.33 -67.93 -0.16 2.09 16 11 H 0.09 1.69 5.92 -51.93 -0.31 1.38 16 12 C 0.14 2.81 5.82 -4.04 -0.02 2.78 16 13 N -0.73 -18.13 5.43 -59.91 -0.33 -18.46 16 14 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 18 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C -0.12 -1.68 4.36 -26.73 -0.12 -1.80 16 23 C -0.09 -1.24 2.38 -90.62 -0.22 -1.45 16 24 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 25 C -0.14 -1.97 8.04 37.16 0.30 -1.67 16 26 C -0.26 -2.64 11.07 29.12 0.32 -2.32 16 27 S 0.10 0.86 23.18 -107.50 -2.49 -1.63 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.97 7.98 -51.93 -0.41 0.55 16 32 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.10 1.52 8.08 -51.93 -0.42 1.11 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 6.15 8.60 -40.82 -0.35 5.80 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.39 10.25 7.33 -40.82 -0.30 9.95 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 1.11 5.19 -51.93 -0.27 0.84 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.08 1.30 4.76 -51.93 -0.25 1.05 16 49 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -32.01 403.90 -9.88 -41.89 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -8.19 Total: 13.77 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.40 Total: -4.81 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: 0.08 Total: -63.42 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.06 Total: -9.22 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.49 Total: -1.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.01 -9.88 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319630108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.448 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds