Wall clock time and date at job start Sat Apr 11 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29033 * 124.91344 * 2 1 4 4 C 1.31784 * 117.11936 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.74609 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46943 * 305.02570 * 5 4 3 7 7 C 1.50699 * 109.47129 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00090 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00383 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00531 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47008 * 325.00296 * 10 9 7 12 12 C 1.52996 * 109.47509 * 205.00222 * 10 9 7 13 13 N 1.46498 * 109.47059 * 54.99655 * 12 10 9 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 10 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47294 * 90.00155 * 18 16 14 20 20 H 1.48499 * 109.47218 * 210.00015 * 18 16 14 21 21 H 1.48496 * 109.47166 * 329.99846 * 18 16 14 22 22 C 1.53004 * 109.47171 * 84.99693 * 10 9 7 23 23 C 1.52999 * 109.46989 * 295.00630 * 22 10 9 24 24 C 1.53000 * 109.46823 * 174.99871 * 23 22 10 25 25 C 1.53002 * 109.47150 * 294.99387 * 23 22 10 26 26 C 1.33631 * 114.50317 * 0.23436 * 4 3 2 27 27 S 1.70978 * 124.91868 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.46830 * 89.99760 * 1 2 3 29 29 H 1.08996 * 109.46806 * 210.00068 * 1 2 3 30 30 H 1.08997 * 109.47007 * 330.00015 * 1 2 3 31 31 H 1.08993 * 109.47190 * 185.02772 * 5 4 3 32 32 H 1.08997 * 109.47124 * 65.02222 * 5 4 3 33 33 H 1.09001 * 109.47603 * 60.00270 * 6 5 4 34 34 H 1.09005 * 109.47626 * 300.00183 * 6 5 4 35 35 H 0.97009 * 119.99558 * 0.02562 * 9 7 6 36 36 H 1.09004 * 109.47066 * 294.99922 * 12 10 9 37 37 H 1.08994 * 109.46974 * 175.00070 * 12 10 9 38 38 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 39 39 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.46462 * 55.00239 * 22 10 9 41 41 H 1.08995 * 109.46930 * 175.00449 * 22 10 9 42 42 H 1.08997 * 109.47498 * 54.99671 * 23 22 10 43 43 H 1.08997 * 109.47247 * 59.99646 * 24 23 22 44 44 H 1.09000 * 109.47485 * 180.02562 * 24 23 22 45 45 H 1.09006 * 109.47094 * 299.99726 * 24 23 22 46 46 H 1.08993 * 109.46832 * 180.02562 * 25 23 22 47 47 H 1.08997 * 109.47152 * 300.00495 * 25 23 22 48 48 H 1.09001 * 109.46642 * 60.00173 * 25 23 22 49 49 H 1.08002 * 126.03828 * 179.76601 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5308 2.0247 0.0000 6 6 4.2334 2.9495 -1.1819 7 6 5.2133 4.0944 -1.1829 8 8 6.0653 4.1641 -0.3226 9 7 5.1429 5.0410 -2.1397 10 6 6.0951 6.1543 -2.1403 11 1 6.3310 6.4312 -1.1128 12 6 5.4776 7.3533 -2.8626 13 7 4.1910 7.6854 -2.2457 14 6 3.4528 8.7349 -2.7242 15 1 3.8171 9.3149 -3.5592 16 6 2.2364 9.0531 -2.1360 17 7 1.7928 8.3464 -1.1181 18 14 1.2292 10.4842 -2.7892 19 1 0.3077 9.9987 -3.8478 20 1 0.4401 11.0805 -1.6815 21 1 2.1388 11.5112 -3.3575 22 6 7.3763 5.7293 -2.8607 23 6 8.0598 4.6123 -2.0695 24 6 9.2718 4.1017 -2.8512 25 6 8.5185 5.1545 -0.7142 26 6 3.9354 -0.4005 -0.0040 27 16 2.4857 -1.4020 0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5449 1.6354 -0.0894 32 1 4.4369 2.5835 0.9311 33 1 3.2193 3.3389 -1.0925 34 1 4.3272 2.3907 -2.1132 35 1 4.4612 4.9854 -2.8276 36 1 5.3236 7.1050 -3.9128 37 1 6.1488 8.2086 -2.7861 38 1 3.8640 7.1646 -1.4955 39 1 0.9426 8.5686 -0.7073 40 1 7.1289 5.3684 -3.8590 41 1 8.0492 6.5831 -2.9393 42 1 7.3565 3.7941 -1.9143 43 1 9.9751 4.9199 -3.0063 44 1 9.7586 3.3057 -2.2877 45 1 8.9451 3.7155 -3.8167 46 1 9.0058 4.3589 -0.1508 47 1 9.2217 5.9726 -0.8694 48 1 7.6549 5.5183 -0.1574 49 1 4.9546 -0.7580 -0.0080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319630108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:40 Heat of formation + Delta-G solvation = -25.464320 kcal Electronic energy + Delta-G solvation = -27500.784053 eV Core-core repulsion = 23781.356017 eV Total energy + Delta-G solvation = -3719.428036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.28170 -40.71638 -38.07670 -36.43847 -34.96313 -34.81238 -33.03918 -32.13090 -30.54519 -29.20020 -27.92019 -27.17369 -26.31516 -24.62029 -23.47441 -22.17384 -21.19063 -20.74396 -20.62473 -19.22813 -18.50729 -17.95668 -17.14919 -16.94956 -16.53288 -16.16632 -16.03900 -15.60257 -15.37294 -15.23080 -14.74698 -14.56009 -14.48788 -14.36110 -14.22707 -13.97394 -13.64279 -13.42680 -13.20419 -13.05252 -12.97043 -12.94161 -12.80660 -12.76578 -12.51311 -12.40084 -12.30100 -12.09933 -11.98017 -11.87781 -11.58303 -11.35665 -11.20220 -10.97151 -10.59498 -10.55495 -10.34726 -9.80942 -9.60013 -9.00403 -7.93757 -5.23418 -0.22918 0.45613 0.77023 1.47659 1.49153 1.57598 1.77605 1.80100 2.39651 2.56434 3.16758 3.40290 3.66813 3.83031 3.98690 4.04833 4.09545 4.12401 4.24374 4.27562 4.36709 4.41927 4.44928 4.52390 4.65050 4.65936 4.67124 4.70720 4.83557 4.91219 4.92163 4.95714 4.98035 5.02240 5.07377 5.10423 5.12774 5.19841 5.26776 5.31193 5.41911 5.50862 5.61136 5.68135 5.73923 6.26698 6.71094 6.85033 7.34006 7.41485 8.08410 8.32061 9.29105 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007499 B = 0.003316 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3733.170241 B = 8441.669097 C =11738.524690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.035 3.965 3 N -0.508 5.508 4 C 0.054 3.946 5 C -0.017 4.017 6 C -0.121 4.121 7 C 0.512 3.488 8 O -0.559 6.559 9 N -0.709 5.709 10 C 0.147 3.853 11 H 0.064 0.936 12 C 0.144 3.856 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.078 0.922 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.973 3.027 19 H -0.285 1.285 20 H -0.299 1.299 21 H -0.270 1.270 22 C -0.113 4.113 23 C -0.088 4.088 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.261 4.261 27 S 0.155 5.845 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.405 0.595 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.374 0.626 39 H 0.250 0.750 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.048 0.952 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.409 -22.475 -1.942 23.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.243 4.243 3 N -0.224 5.224 4 C -0.077 4.077 5 C -0.058 4.058 6 C -0.162 4.162 7 C 0.299 3.701 8 O -0.439 6.439 9 N -0.360 5.360 10 C 0.042 3.958 11 H 0.082 0.918 12 C 0.017 3.983 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.096 0.904 16 C -0.266 4.266 17 N -0.618 5.618 18 Si 0.802 3.198 19 H -0.212 1.212 20 H -0.226 1.226 21 H -0.195 1.195 22 C -0.152 4.152 23 C -0.107 4.107 24 C -0.198 4.198 25 C -0.190 4.190 26 C -0.400 4.400 27 S 0.409 5.591 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.125 0.875 35 H 0.240 0.760 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.206 0.794 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 6.531 -22.842 -1.454 23.802 hybrid contribution -0.654 1.674 0.007 1.798 sum 5.878 -21.168 -1.447 22.016 Atomic orbital electron populations 1.20610 0.83480 1.05027 1.04934 1.27602 1.03166 0.91242 1.02272 1.66119 1.05386 1.33296 1.17593 1.20319 0.89950 0.94920 1.02543 1.19779 0.96278 0.91731 0.97993 1.21457 0.98903 0.94677 1.01123 1.20847 0.84770 0.83677 0.80758 1.90662 1.37836 1.77508 1.37890 1.45970 1.34789 1.24633 1.30614 1.21137 0.89218 0.85500 0.99963 0.91795 1.21114 0.86907 0.94497 0.95738 1.42526 1.19958 1.36790 1.39266 1.19629 0.99845 1.06584 1.11584 0.90433 1.25554 0.99642 1.02384 0.99005 1.69840 1.21762 1.43568 1.26636 0.85154 0.78612 0.79271 0.76781 1.21233 1.22565 1.19462 1.21949 0.94903 0.99294 0.99026 1.21070 0.97191 0.97621 0.94813 1.21809 0.97324 1.00914 0.99727 1.21755 1.00312 0.99863 0.97077 1.27134 1.04772 0.95317 1.12787 1.83641 0.96529 1.11179 1.67713 0.88408 0.87663 0.90065 0.88464 0.91651 0.89627 0.87520 0.76014 0.94548 0.94921 0.79378 0.94165 0.90713 0.90406 0.91903 0.92373 0.92778 0.92387 0.93798 0.93482 0.93284 0.78426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.46 71.24 0.75 -0.41 16 2 C 0.03 0.72 7.39 88.52 0.65 1.38 16 3 N -0.51 -13.81 10.34 -179.39 -1.86 -15.67 16 4 C 0.05 1.32 6.08 41.52 0.25 1.57 16 5 C -0.02 -0.45 5.00 29.85 0.15 -0.30 16 6 C -0.12 -3.27 5.60 29.85 0.17 -3.10 16 7 C 0.51 16.17 6.39 87.66 0.56 16.73 16 8 O -0.56 -19.84 10.94 -3.02 -0.03 -19.87 16 9 N -0.71 -22.46 4.47 -442.55 -1.98 -24.44 16 10 C 0.15 4.86 2.33 44.99 0.10 4.96 16 11 H 0.06 2.48 5.92 -2.39 -0.01 2.47 16 12 C 0.14 5.57 5.82 86.38 0.50 6.07 16 13 N -0.74 -37.28 5.43 -343.46 -1.87 -39.14 16 14 C -0.24 -13.54 9.99 84.03 0.84 -12.70 16 15 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 16 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 17 N -0.97 -59.82 13.06 21.65 0.28 -59.53 16 18 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 19 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 C -0.11 -2.95 4.36 30.60 0.13 -2.81 16 23 C -0.09 -2.27 2.38 -10.79 -0.03 -2.30 16 24 C -0.14 -2.86 9.19 71.98 0.66 -2.19 16 25 C -0.13 -3.76 8.04 71.98 0.58 -3.18 16 26 C -0.26 -4.89 11.07 66.77 0.74 -4.15 16 27 S 0.15 2.44 23.18 -56.49 -1.31 1.13 16 28 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.10 2.20 7.98 -2.39 -0.02 2.18 16 32 H 0.06 1.97 8.10 -2.39 -0.02 1.95 16 33 H 0.09 2.66 8.08 -2.39 -0.02 2.64 16 34 H 0.11 2.38 8.14 -2.38 -0.02 2.36 16 35 H 0.40 12.46 8.60 -92.70 -0.80 11.66 16 36 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.37 20.46 7.33 -92.71 -0.68 19.79 16 39 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 1.80 5.19 -2.39 -0.01 1.78 16 43 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 46 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 48 H 0.05 1.68 4.76 -2.39 -0.01 1.67 16 49 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.85 403.90 1.27 -68.58 By element: Atomic # 1 Polarization: 45.40 SS G_CDS: -0.52 Total: 44.88 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 6.53 Total: -4.19 kcal Atomic # 7 Polarization: -133.37 SS G_CDS: -5.42 Total: -138.78 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.03 Total: -19.87 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.13 kcal Total: -69.85 1.27 -68.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319630108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.114 kcal (2) G-P(sol) polarization free energy of solvation -69.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds