Wall clock time and date at job start Sat Apr 11 2020 05:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.52999 * 109.47038 * 240.00260 * 2 1 3 5 5 O 1.45192 * 109.46978 * 120.00028 * 2 1 3 6 6 C 1.34632 * 117.00421 * 60.00614 * 5 2 1 7 7 O 1.21518 * 119.99576 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00301 * 179.97438 * 6 5 2 9 9 C 1.48137 * 127.83797 * 359.97438 * 8 6 5 10 10 C 1.54385 * 104.61863 * 219.58642 * 9 8 6 11 11 H 1.09003 * 117.04355 * 114.64636 * 10 9 8 12 12 C 1.57117 * 118.20423 * 273.80069 * 10 9 8 13 13 H 1.09005 * 117.15073 * 343.58400 * 12 10 9 14 14 C 1.53006 * 118.27778 * 197.98602 * 12 10 9 15 15 O 1.45189 * 109.47322 * 116.53358 * 14 12 10 16 16 C 1.34230 * 117.00023 * 180.02562 * 15 14 12 17 17 O 1.20825 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00157 * 180.02562 * 16 15 14 19 19 C 1.53007 * 109.47305 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47305 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00076 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00231 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99672 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47072 * 59.99979 * 24 22 20 26 26 H 1.48507 * 109.47043 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47153 * 299.99789 * 24 22 20 28 28 C 1.52997 * 59.65466 * 91.03717 * 12 10 9 29 29 H 1.09002 * 119.54133 * 112.44992 * 28 12 10 30 30 C 1.48147 * 127.83569 * 179.97438 * 8 6 5 31 31 H 1.08998 * 109.47348 * 300.00191 * 1 2 3 32 32 H 1.09002 * 109.47361 * 60.00157 * 1 2 3 33 33 H 1.08999 * 109.47173 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47346 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47573 * 300.00308 * 3 2 1 36 36 H 1.08998 * 109.47237 * 59.99741 * 3 2 1 37 37 H 1.08997 * 109.47162 * 299.99598 * 4 2 1 38 38 H 1.09007 * 109.47423 * 60.00053 * 4 2 1 39 39 H 1.09000 * 109.47062 * 179.97438 * 4 2 1 40 40 H 1.09003 * 110.41101 * 338.37000 * 9 8 6 41 41 H 1.09008 * 110.40831 * 100.68601 * 9 8 6 42 42 H 1.08998 * 109.46910 * 236.53733 * 14 12 10 43 43 H 1.09007 * 109.46583 * 356.53483 * 14 12 10 44 44 H 1.09004 * 109.47313 * 299.99728 * 18 16 15 45 45 H 1.09004 * 109.47484 * 60.00090 * 18 16 15 46 46 H 1.09004 * 109.46728 * 300.00106 * 19 18 16 47 47 H 1.09004 * 109.46760 * 59.99666 * 19 18 16 48 48 H 0.96999 * 119.99780 * 180.02562 * 23 22 20 49 49 H 1.08995 * 110.41295 * 21.62838 * 30 8 6 50 50 H 1.09004 * 110.50823 * 259.24593 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5038 8 7 2.0681 -2.6657 2.4166 9 6 2.9202 -2.1886 3.5306 10 6 3.8566 -3.3762 3.8410 11 1 4.9203 -3.2310 3.6525 12 6 3.3486 -4.4824 4.8344 13 1 2.4933 -4.2324 5.4622 14 6 4.3813 -5.4157 5.4696 15 8 4.3913 -5.2191 6.9081 16 6 5.2492 -5.9673 7.6195 17 8 5.9676 -6.7605 7.0587 18 6 5.3154 -5.8187 9.1176 19 6 6.3654 -6.7794 9.6795 20 6 6.4312 -6.6313 11.1777 21 1 5.7888 -5.9225 11.6791 22 6 7.3123 -7.3999 11.9085 23 7 8.0950 -8.2627 11.2979 24 14 7.3944 -7.2158 13.7655 25 1 6.0682 -7.5334 14.3536 26 1 8.4133 -8.1483 14.3109 27 1 7.7664 -5.8197 14.1086 28 6 3.1027 -4.6219 3.3308 29 1 3.6078 -5.4115 2.7745 30 6 1.7767 -4.0778 2.7567 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2073 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 3.4994 -1.3188 3.2206 41 1 2.3088 -1.9469 4.4001 42 1 4.1218 -6.4505 5.2461 43 1 5.3690 -5.1933 5.0656 44 1 5.5885 -4.7939 9.3694 45 1 4.3421 -6.0519 9.5494 46 1 6.0919 -7.8041 9.4277 47 1 7.3388 -6.5466 9.2478 48 1 8.7146 -8.8037 11.8120 49 1 1.4932 -4.6334 1.8629 50 1 0.9866 -4.1351 3.5054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345001443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:56 Heat of formation + Delta-G solvation = -139.550857 kcal Electronic energy + Delta-G solvation = -28636.355277 eV Core-core repulsion = 24436.934456 eV Total energy + Delta-G solvation = -4199.420821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26059 -40.19763 -39.64843 -37.21618 -36.20602 -34.71887 -33.81894 -33.59552 -31.19326 -29.02974 -28.81214 -27.82509 -27.78680 -26.17409 -25.01415 -22.35386 -22.00947 -21.05069 -20.61222 -19.81147 -19.73502 -18.30517 -17.37525 -16.95926 -16.68165 -16.48477 -16.22511 -15.89036 -15.39413 -15.13614 -14.61787 -14.51607 -14.47025 -14.29382 -13.90393 -13.77105 -13.17395 -12.92761 -12.79867 -12.65735 -12.58186 -12.40142 -12.31754 -12.25372 -12.22972 -11.88086 -11.85975 -11.80204 -11.60511 -11.20146 -10.95805 -10.77691 -10.74087 -10.69019 -10.64615 -10.36534 -10.07582 -9.94491 -9.93967 -9.56481 -9.27381 -9.20662 -8.38740 -6.02761 -4.07859 1.63040 2.44995 2.77548 2.81296 3.05303 3.32059 3.36875 3.38740 3.49791 4.00435 4.15909 4.28801 4.33700 4.37582 4.44715 4.47630 4.58579 4.74141 4.93250 4.95791 5.04708 5.09072 5.11836 5.20150 5.25707 5.26966 5.30698 5.32644 5.33843 5.36127 5.43442 5.45067 5.54650 5.60498 5.63552 5.70247 5.87104 5.88573 5.91245 6.08265 6.09985 6.17763 6.61676 6.89955 7.09621 7.64479 7.71366 7.94762 7.96360 8.22874 8.38371 8.99039 9.56302 11.08161 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.001460 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.240121 B =19172.862840 C =19509.876899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.361 6.361 6 C 0.676 3.324 7 O -0.568 6.568 8 N -0.611 5.611 9 C 0.131 3.869 10 C -0.172 4.172 11 H 0.128 0.872 12 C -0.101 4.101 13 H 0.122 0.878 14 C 0.095 3.905 15 O -0.363 6.363 16 C 0.458 3.542 17 O -0.506 6.506 18 C -0.103 4.103 19 C 0.033 3.967 20 C -0.530 4.530 21 H 0.058 0.942 22 C 0.059 3.941 23 N -0.889 5.889 24 Si 0.896 3.104 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.165 4.165 29 H 0.127 0.873 30 C 0.151 3.849 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.262 0.738 49 H 0.094 0.906 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.958 17.771 -23.997 33.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.432 3.568 7 O -0.457 6.457 8 N -0.352 5.352 9 C 0.008 3.992 10 C -0.191 4.191 11 H 0.146 0.854 12 C -0.120 4.120 13 H 0.140 0.860 14 C 0.021 3.979 15 O -0.282 6.282 16 C 0.302 3.698 17 O -0.392 6.392 18 C -0.141 4.141 19 C -0.004 4.004 20 C -0.568 4.568 21 H 0.077 0.923 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.724 3.276 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C -0.184 4.184 29 H 0.145 0.855 30 C 0.030 3.970 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.110 0.890 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.044 0.956 47 H 0.044 0.956 48 H 0.072 0.928 49 H 0.112 0.888 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.878 17.384 -24.619 33.610 hybrid contribution 0.262 -0.039 0.747 0.793 sum -14.617 17.345 -23.871 32.929 Atomic orbital electron populations 1.22520 0.93933 1.05059 1.02569 1.22102 0.94420 0.91552 0.82013 1.21865 1.02341 0.92385 1.03210 1.22521 1.01629 1.03464 0.96474 1.86308 1.71463 1.23300 1.46479 1.17346 0.78498 0.80448 0.80548 1.90911 1.41537 1.70582 1.42690 1.47917 1.53170 1.12851 1.21241 1.21882 0.92031 0.96229 0.89009 1.24531 0.99633 0.89722 1.05221 0.85396 1.22892 1.00577 0.97807 0.90694 0.85999 1.22255 0.98342 0.98709 0.78623 1.86539 1.59523 1.62057 1.20037 1.24785 0.75993 0.76952 0.92113 1.90642 1.40916 1.35113 1.72545 1.21773 1.04340 1.04435 0.83505 1.19022 0.92619 0.93727 0.95078 1.21118 1.21667 1.22371 0.91652 0.92335 1.25018 0.95429 0.95120 0.98712 1.69985 1.23215 1.23778 1.35793 0.86598 0.77803 0.77969 0.85250 1.20164 1.21259 1.20164 1.23771 0.97985 1.00888 0.95749 0.85521 1.21746 0.95217 0.79123 1.00877 0.92115 0.91060 0.89422 0.91400 0.90052 0.91387 0.89429 0.91059 0.92126 0.89042 0.90063 0.90419 0.91019 0.88897 0.88900 0.95583 0.95594 0.92788 0.88801 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 8.37 37.16 0.31 -1.07 16 2 C 0.14 1.06 1.13 -90.62 -0.10 0.95 16 3 C -0.14 -0.75 8.85 37.16 0.33 -0.42 16 4 C -0.18 -1.40 8.37 37.16 0.31 -1.09 16 5 O -0.36 -3.54 9.41 -40.30 -0.38 -3.92 16 6 C 0.68 7.39 8.01 54.06 0.43 7.82 16 7 O -0.57 -7.25 12.15 -19.29 -0.23 -7.48 16 8 N -0.61 -5.64 3.32 -175.08 -0.58 -6.22 16 9 C 0.13 0.99 6.90 -2.42 -0.02 0.97 16 10 C -0.17 -1.34 7.00 -86.99 -0.61 -1.95 16 11 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 12 C -0.10 -0.88 5.76 -88.38 -0.51 -1.39 16 13 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.09 1.13 5.77 37.16 0.21 1.35 16 15 O -0.36 -5.55 10.22 -39.26 -0.40 -5.95 16 16 C 0.46 8.65 7.96 36.00 0.29 8.94 16 17 O -0.51 -11.16 15.73 -18.75 -0.29 -11.46 16 18 C -0.10 -2.04 5.75 -27.88 -0.16 -2.20 16 19 C 0.03 0.85 4.26 -27.88 -0.12 0.73 16 20 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 21 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -26.75 13.29 55.43 0.74 -26.02 16 24 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 C -0.16 -1.25 6.71 -89.22 -0.60 -1.85 16 29 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 30 C 0.15 1.19 6.85 -2.41 -0.02 1.17 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.86 5.88 -51.93 -0.31 0.55 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.87 5.88 -51.93 -0.31 0.57 16 38 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.65 7.87 -51.93 -0.41 0.25 16 41 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.08 0.93 8.13 -51.93 -0.42 0.51 16 43 H 0.07 0.86 8.00 -51.93 -0.42 0.45 16 44 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 45 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 46 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 47 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.09 0.77 7.88 -51.93 -0.41 0.36 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 411.12 15.07 6.20 6.20 Total: -1.00 -33.52 411.12 -9.20 -42.73 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.57 Total: -2.69 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -0.66 Total: -1.38 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.16 Total: -32.23 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -1.31 Total: -28.81 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.52 -9.20 -42.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345001443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.825 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds