Wall clock time and date at job start Sat Apr 11 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46978 * 2 1 4 4 C 1.52999 * 109.47038 * 240.00260 * 2 1 3 5 5 O 1.45192 * 109.46978 * 120.00028 * 2 1 3 6 6 C 1.34632 * 117.00421 * 60.00614 * 5 2 1 7 7 O 1.21518 * 119.99576 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00301 * 179.97438 * 6 5 2 9 9 C 1.48137 * 127.83797 * 359.97438 * 8 6 5 10 10 C 1.54385 * 104.61863 * 219.58642 * 9 8 6 11 11 H 1.09003 * 117.04355 * 114.64636 * 10 9 8 12 12 C 1.57117 * 118.20423 * 273.80069 * 10 9 8 13 13 H 1.09005 * 117.15073 * 343.58400 * 12 10 9 14 14 C 1.53006 * 118.27778 * 197.98602 * 12 10 9 15 15 O 1.45189 * 109.47322 * 116.53358 * 14 12 10 16 16 C 1.34230 * 117.00023 * 180.02562 * 15 14 12 17 17 O 1.20825 * 119.99822 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00157 * 180.02562 * 16 15 14 19 19 C 1.53007 * 109.47305 * 179.97438 * 18 16 15 20 20 C 1.50697 * 109.47305 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00076 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00231 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99672 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00168 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47072 * 59.99979 * 24 22 20 26 26 H 1.48507 * 109.47043 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47153 * 299.99789 * 24 22 20 28 28 C 1.52997 * 59.65466 * 91.03717 * 12 10 9 29 29 H 1.09002 * 119.54133 * 112.44992 * 28 12 10 30 30 C 1.48147 * 127.83569 * 179.97438 * 8 6 5 31 31 H 1.08998 * 109.47348 * 300.00191 * 1 2 3 32 32 H 1.09002 * 109.47361 * 60.00157 * 1 2 3 33 33 H 1.08999 * 109.47173 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47346 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47573 * 300.00308 * 3 2 1 36 36 H 1.08998 * 109.47237 * 59.99741 * 3 2 1 37 37 H 1.08997 * 109.47162 * 299.99598 * 4 2 1 38 38 H 1.09007 * 109.47423 * 60.00053 * 4 2 1 39 39 H 1.09000 * 109.47062 * 179.97438 * 4 2 1 40 40 H 1.09003 * 110.41101 * 338.37000 * 9 8 6 41 41 H 1.09008 * 110.40831 * 100.68601 * 9 8 6 42 42 H 1.08998 * 109.46910 * 236.53733 * 14 12 10 43 43 H 1.09007 * 109.46583 * 356.53483 * 14 12 10 44 44 H 1.09004 * 109.47313 * 299.99728 * 18 16 15 45 45 H 1.09004 * 109.47484 * 60.00090 * 18 16 15 46 46 H 1.09004 * 109.46728 * 300.00106 * 19 18 16 47 47 H 1.09004 * 109.46760 * 59.99666 * 19 18 16 48 48 H 0.96999 * 119.99780 * 180.02562 * 23 22 20 49 49 H 1.08995 * 110.41295 * 21.62838 * 30 8 6 50 50 H 1.09004 * 110.50823 * 259.24593 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5038 8 7 2.0681 -2.6657 2.4166 9 6 2.9202 -2.1886 3.5306 10 6 3.8566 -3.3762 3.8410 11 1 4.9203 -3.2310 3.6525 12 6 3.3486 -4.4824 4.8344 13 1 2.4933 -4.2324 5.4622 14 6 4.3813 -5.4157 5.4696 15 8 4.3913 -5.2191 6.9081 16 6 5.2492 -5.9673 7.6195 17 8 5.9676 -6.7605 7.0587 18 6 5.3154 -5.8187 9.1176 19 6 6.3654 -6.7794 9.6795 20 6 6.4312 -6.6313 11.1777 21 1 5.7888 -5.9225 11.6791 22 6 7.3123 -7.3999 11.9085 23 7 8.0950 -8.2627 11.2979 24 14 7.3944 -7.2158 13.7655 25 1 6.0682 -7.5334 14.3536 26 1 8.4133 -8.1483 14.3109 27 1 7.7664 -5.8197 14.1086 28 6 3.1027 -4.6219 3.3308 29 1 3.6078 -5.4115 2.7745 30 6 1.7767 -4.0778 2.7567 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2073 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 3.4994 -1.3188 3.2206 41 1 2.3088 -1.9469 4.4001 42 1 4.1218 -6.4505 5.2461 43 1 5.3690 -5.1933 5.0656 44 1 5.5885 -4.7939 9.3694 45 1 4.3421 -6.0519 9.5494 46 1 6.0919 -7.8041 9.4277 47 1 7.3388 -6.5466 9.2478 48 1 8.7146 -8.8037 11.8120 49 1 1.4932 -4.6334 1.8629 50 1 0.9866 -4.1351 3.5054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345001443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:55 Heat of formation + Delta-G solvation = -157.794850 kcal Electronic energy + Delta-G solvation = -28637.146396 eV Core-core repulsion = 24436.934456 eV Total energy + Delta-G solvation = -4200.211940 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.99236 -41.46193 -40.51811 -38.02314 -37.53073 -35.62122 -35.45589 -34.51588 -33.12045 -29.84425 -29.64283 -28.37570 -28.29784 -27.89506 -26.04040 -24.00206 -22.84285 -21.82083 -21.49417 -21.10238 -20.45894 -19.03943 -19.01187 -18.13306 -17.68849 -17.58476 -17.40956 -17.18640 -16.46645 -16.21978 -15.84252 -15.50958 -15.37064 -15.08862 -14.99261 -14.42028 -14.29411 -14.09835 -14.08326 -13.63663 -13.39872 -13.30152 -13.21993 -13.11139 -12.89535 -12.87468 -12.77841 -12.62082 -12.56523 -12.50212 -12.49878 -12.28759 -11.97357 -11.86157 -11.73164 -11.49730 -11.41757 -11.33441 -11.24436 -11.01968 -10.72325 -10.54683 -9.97746 -8.17921 -6.31593 0.95429 1.27318 1.44995 1.49140 1.56241 1.60800 1.71539 2.28679 2.45077 2.84803 3.16017 3.23811 3.45597 3.67006 3.74082 3.78864 3.93581 3.96079 4.06965 4.08336 4.12477 4.32497 4.35556 4.41367 4.48276 4.49777 4.52316 4.60684 4.61786 4.71002 4.73839 4.75745 4.83519 4.84569 4.87147 4.96151 4.98415 5.06869 5.14080 5.15756 5.26684 5.31815 5.42343 5.43070 5.50421 5.58321 5.82981 6.15551 6.36196 6.82097 6.89465 7.17880 7.38745 8.94365 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.033080 B = 0.001460 C = 0.001435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.240121 B =19172.862840 C =19509.876899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.124 3.876 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.366 6.366 6 C 0.669 3.331 7 O -0.593 6.593 8 N -0.613 5.613 9 C 0.132 3.868 10 C -0.167 4.167 11 H 0.132 0.868 12 C -0.100 4.100 13 H 0.132 0.868 14 C 0.090 3.910 15 O -0.351 6.351 16 C 0.468 3.532 17 O -0.546 6.546 18 C -0.095 4.095 19 C 0.037 3.963 20 C -0.545 4.545 21 H 0.078 0.922 22 C -0.003 4.003 23 N -0.936 5.936 24 Si 0.973 3.027 25 H -0.263 1.263 26 H -0.289 1.289 27 H -0.263 1.263 28 C -0.154 4.154 29 H 0.132 0.868 30 C 0.150 3.850 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.117 0.883 45 H 0.117 0.883 46 H -0.010 1.010 47 H -0.010 1.010 48 H 0.263 0.737 49 H 0.088 0.912 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.182 20.082 -23.441 34.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.088 3.912 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.280 6.280 6 C 0.425 3.575 7 O -0.484 6.484 8 N -0.354 5.354 9 C 0.011 3.989 10 C -0.186 4.186 11 H 0.150 0.850 12 C -0.118 4.118 13 H 0.150 0.850 14 C 0.017 3.983 15 O -0.268 6.268 16 C 0.313 3.687 17 O -0.436 6.436 18 C -0.132 4.132 19 C 0.000 4.000 20 C -0.583 4.583 21 H 0.096 0.904 22 C -0.201 4.201 23 N -0.575 5.575 24 Si 0.797 3.203 25 H -0.188 1.188 26 H -0.214 1.214 27 H -0.187 1.187 28 C -0.173 4.173 29 H 0.150 0.850 30 C 0.029 3.971 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.008 0.992 47 H 0.008 0.992 48 H 0.072 0.928 49 H 0.106 0.894 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.130 19.734 -24.061 35.050 hybrid contribution 0.611 -0.736 0.455 1.060 sum -15.519 18.998 -23.605 34.044 Atomic orbital electron populations 1.22470 0.93871 1.03624 1.03670 1.22436 0.94671 0.92683 0.81387 1.21886 1.02400 0.90605 1.04392 1.22473 1.01553 1.02162 0.97486 1.86316 1.71500 1.22767 1.47436 1.17549 0.78454 0.80808 0.80667 1.90900 1.42695 1.71154 1.43657 1.48048 1.52999 1.13258 1.21108 1.21969 0.92002 0.96138 0.88838 1.24565 0.99992 0.89834 1.04229 0.84991 1.22716 1.00023 0.97931 0.91175 0.85033 1.22515 0.99512 0.99809 0.76508 1.86489 1.57813 1.60611 1.21917 1.24458 0.75756 0.76475 0.92026 1.90637 1.42709 1.36959 1.73255 1.21514 1.03399 1.03886 0.84378 1.18810 0.92802 0.93358 0.95078 1.21633 1.21684 1.22427 0.92532 0.90378 1.26083 0.94959 0.94636 1.04437 1.70156 1.24279 1.25070 1.38039 0.85379 0.78181 0.78374 0.78354 1.18759 1.21435 1.18736 1.23735 0.97905 1.00946 0.94756 0.84982 1.21825 0.95650 0.78598 1.01002 0.91910 0.89047 0.92029 0.91306 0.87926 0.91141 0.92066 0.89023 0.92123 0.88545 0.88855 0.90489 0.91166 0.86518 0.86524 0.99186 0.99185 0.92818 0.89375 0.88645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 8.37 71.98 0.60 -1.94 16 2 C 0.12 1.81 1.13 -10.79 -0.01 1.79 16 3 C -0.14 -1.17 8.85 71.98 0.64 -0.53 16 4 C -0.18 -2.63 8.37 71.98 0.60 -2.02 16 5 O -0.37 -6.93 9.41 -55.41 -0.52 -7.45 16 6 C 0.67 14.44 8.01 129.79 1.04 15.48 16 7 O -0.59 -15.43 12.15 19.79 0.24 -15.19 16 8 N -0.61 -10.69 3.32 -938.25 -3.11 -13.80 16 9 C 0.13 1.75 6.90 86.53 0.60 2.35 16 10 C -0.17 -2.30 7.00 -8.44 -0.06 -2.36 16 11 H 0.13 1.75 8.14 -2.39 -0.02 1.74 16 12 C -0.10 -1.55 5.76 -9.35 -0.05 -1.61 16 13 H 0.13 1.85 8.14 -2.38 -0.02 1.83 16 14 C 0.09 2.05 5.77 71.98 0.42 2.47 16 15 O -0.35 -10.19 10.22 -51.41 -0.53 -10.72 16 16 C 0.47 17.50 7.96 71.23 0.57 18.06 16 17 O -0.55 -24.65 15.73 21.97 0.35 -24.31 16 18 C -0.09 -3.66 5.75 29.85 0.17 -3.49 16 19 C 0.04 1.96 4.26 29.85 0.13 2.08 16 20 C -0.55 -29.97 9.11 25.60 0.23 -29.73 16 21 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 22 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 23 N -0.94 -57.68 13.29 21.45 0.28 -57.40 16 24 Si 0.97 43.14 29.54 68.60 2.03 45.17 16 25 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 28 C -0.15 -2.10 6.71 -9.89 -0.07 -2.17 16 29 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 30 C 0.15 2.18 6.85 86.53 0.59 2.77 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.23 5.88 -2.39 -0.01 1.21 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 1.25 5.88 -2.39 -0.01 1.23 16 38 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 41 H 0.09 1.04 8.14 -2.38 -0.02 1.03 16 42 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 43 H 0.07 1.64 8.00 -2.38 -0.02 1.62 16 44 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 45 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 46 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 47 H -0.01 -0.61 8.10 -2.39 -0.02 -0.63 16 48 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.09 1.41 7.88 -2.39 -0.02 1.39 16 50 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -74.66 411.12 5.51 -69.15 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.91 Total: 13.10 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 5.86 Total: 1.44 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -2.83 Total: -71.19 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -0.46 Total: -57.67 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.66 5.51 -69.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345001443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.648 kcal (2) G-P(sol) polarization free energy of solvation -74.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds