Wall clock time and date at job start Sat Apr 11 2020 05:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.53002 * 109.47454 * 239.99992 * 2 1 3 5 5 O 1.45206 * 109.47129 * 119.99823 * 2 1 3 6 6 C 1.34226 * 116.99826 * 60.00523 * 5 2 1 7 7 O 1.20826 * 120.00044 * 359.97438 * 6 5 2 8 8 C 1.50700 * 119.99715 * 180.02562 * 6 5 2 9 9 H 1.09003 * 110.43846 * 59.29610 * 8 6 5 10 10 C 1.54266 * 110.48709 * 296.75091 * 8 6 5 11 11 C 1.53877 * 106.59871 * 217.71369 * 10 8 6 12 12 C 1.54256 * 106.59855 * 0.02562 * 11 10 8 13 13 H 1.09001 * 110.48791 * 264.79886 * 12 11 10 14 14 C 1.50708 * 110.48444 * 142.29017 * 12 11 10 15 15 O 1.21281 * 119.99706 * 241.45338 * 14 12 11 16 16 N 1.34769 * 120.00323 * 61.45119 * 14 12 11 17 17 C 1.47070 * 136.05617 * 359.63365 * 16 14 12 18 18 C 1.53241 * 88.08303 * 207.20274 * 17 16 14 19 19 O 1.42902 * 114.01779 * 87.71301 * 18 17 16 20 20 C 1.50701 * 114.32331 * 220.46826 * 18 17 16 21 21 H 1.07997 * 119.99631 * 93.75981 * 20 18 17 22 22 C 1.37880 * 120.00068 * 273.75586 * 20 18 17 23 23 N 1.31513 * 119.99496 * 0.02562 * 22 20 18 24 24 Si 1.86797 * 119.99906 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47150 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46968 * 120.00346 * 24 22 20 27 27 H 1.48498 * 109.47030 * 240.00030 * 24 22 20 28 28 C 1.47066 * 136.06333 * 180.02562 * 16 14 12 29 29 C 1.54891 * 110.48507 * 181.83615 * 8 6 5 30 30 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 31 31 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 32 32 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47375 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47045 * 299.99867 * 3 2 1 35 35 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 36 36 H 1.09004 * 109.47006 * 299.99897 * 4 2 1 37 37 H 1.09002 * 109.46838 * 59.99394 * 4 2 1 38 38 H 1.08992 * 109.47056 * 180.02562 * 4 2 1 39 39 H 1.08993 * 110.03166 * 337.00148 * 10 8 6 40 40 H 1.08996 * 110.03032 * 98.37801 * 10 8 6 41 41 H 1.08998 * 110.02858 * 119.28853 * 11 10 8 42 42 H 1.09000 * 110.02606 * 240.66228 * 11 10 8 43 43 H 1.09007 * 113.46520 * 321.93277 * 17 16 14 44 44 H 1.08998 * 113.47102 * 92.36849 * 17 16 14 45 45 H 0.96704 * 113.99863 * 86.39009 * 19 18 17 46 46 H 0.97005 * 119.99649 * 179.97438 * 23 22 20 47 47 H 1.09003 * 113.46555 * 267.63001 * 28 16 14 48 48 H 1.09004 * 113.46501 * 38.06307 * 28 16 14 49 49 H 1.09004 * 110.75991 * 274.93590 * 29 8 6 50 50 H 1.09004 * 110.75477 * 38.30534 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6535 -1.9684 1.3379 7 8 0.9561 -2.5025 0.5082 8 6 2.1175 -2.7433 2.5442 9 1 1.7718 -2.2644 3.4603 10 6 3.6551 -2.8681 2.5471 11 6 3.9808 -4.2765 3.0744 12 6 2.6298 -4.9587 3.3729 13 1 2.3674 -4.8417 4.4243 14 6 2.6832 -6.4187 3.0032 15 8 1.9373 -6.8566 2.1530 16 7 3.5597 -7.2378 3.6173 17 6 4.5945 -7.0964 4.6528 18 6 5.3166 -8.2916 4.0215 19 8 6.2181 -7.9376 2.9707 20 6 5.9066 -9.2568 5.0171 21 1 5.3410 -10.1214 5.3313 22 6 7.1687 -9.0361 5.5266 23 7 7.8572 -7.9830 5.1441 24 14 7.9003 -10.2330 6.7601 25 1 6.9313 -11.3272 7.0229 26 1 9.1553 -10.8053 6.2100 27 1 8.1962 -9.5182 8.0277 28 6 3.9073 -8.6648 3.5420 29 6 1.6147 -4.2067 2.4747 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7490 -1.2492 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7216 -1.2489 39 1 4.0411 -2.7499 1.5347 40 1 4.0896 -2.1134 3.2026 41 1 4.5250 -4.8417 2.3179 42 1 4.5742 -4.2058 3.9860 43 1 5.1558 -6.1648 4.5812 44 1 4.2295 -7.2927 5.6609 45 1 7.1052 -7.7030 3.2760 46 1 8.7450 -7.8275 5.5029 47 1 3.3571 -9.2835 4.2510 48 1 3.8855 -9.0639 2.5279 49 1 0.6050 -4.2879 2.8772 50 1 1.6551 -4.5808 1.4516 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412034846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:11 Heat of formation + Delta-G solvation = -149.434905 kcal Electronic energy + Delta-G solvation = -30609.987355 eV Core-core repulsion = 26410.137929 eV Total energy + Delta-G solvation = -4199.849426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11760 -39.84048 -38.30987 -37.19902 -36.26827 -34.25414 -34.00979 -32.20894 -30.36122 -28.82310 -28.26329 -27.68612 -27.64634 -25.44597 -25.10263 -23.52618 -21.44352 -20.79617 -19.77794 -19.49793 -18.25337 -17.63934 -17.14858 -16.72997 -16.36835 -16.11352 -15.49385 -15.41910 -15.05890 -14.57690 -14.39131 -14.21578 -14.13258 -13.91695 -13.48744 -13.06982 -12.88945 -12.75532 -12.57473 -12.47227 -12.22724 -12.17007 -12.09850 -11.95858 -11.76383 -11.65984 -11.57783 -11.36985 -11.24461 -11.17300 -11.09382 -10.89218 -10.83327 -10.59450 -10.54144 -10.47454 -10.25495 -9.97994 -9.57647 -9.13766 -8.79041 -8.39305 -7.83372 -6.42688 -4.52559 2.14234 2.49936 3.11546 3.20366 3.21817 3.25420 3.57356 4.16252 4.27155 4.42484 4.44222 4.49325 4.60016 4.64709 4.81046 4.94793 5.16079 5.18968 5.25896 5.32119 5.34376 5.37130 5.40423 5.45678 5.50001 5.55742 5.56881 5.60258 5.65113 5.71438 5.84845 5.94348 5.98387 6.01843 6.05045 6.16083 6.20292 6.28635 6.37789 6.41314 6.46617 6.51517 6.66991 6.69644 7.10169 7.61019 7.74760 7.79220 8.50189 8.55202 8.79160 9.18966 9.47562 10.63918 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.002286 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.699832 B =12247.778543 C =12776.275321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.350 6.350 6 C 0.472 3.528 7 O -0.498 6.498 8 C -0.091 4.091 9 H 0.112 0.888 10 C -0.107 4.107 11 C -0.113 4.113 12 C -0.106 4.106 13 H 0.099 0.901 14 C 0.541 3.459 15 O -0.562 6.562 16 N -0.633 5.633 17 C 0.071 3.929 18 C 0.239 3.761 19 O -0.571 6.571 20 C -0.532 4.532 21 H 0.073 0.927 22 C 0.071 3.929 23 N -0.898 5.898 24 Si 0.908 3.092 25 H -0.270 1.270 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.105 3.895 29 C -0.085 4.085 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.393 0.607 46 H 0.273 0.727 47 H 0.084 0.916 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.276 17.442 -3.696 19.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.268 6.268 6 C 0.315 3.685 7 O -0.385 6.385 8 C -0.110 4.110 9 H 0.130 0.870 10 C -0.144 4.144 11 C -0.150 4.150 12 C -0.127 4.127 13 H 0.117 0.883 14 C 0.331 3.669 15 O -0.442 6.442 16 N -0.366 5.366 17 C -0.052 4.052 18 C 0.197 3.803 19 O -0.384 6.384 20 C -0.570 4.570 21 H 0.091 0.909 22 C -0.131 4.131 23 N -0.539 5.539 24 Si 0.735 3.265 25 H -0.194 1.194 26 H -0.206 1.206 27 H -0.207 1.207 28 C -0.017 4.017 29 C -0.122 4.122 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.097 0.903 45 H 0.250 0.750 46 H 0.083 0.917 47 H 0.102 0.898 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -9.358 17.201 -4.870 20.178 hybrid contribution 0.838 -0.284 1.056 1.378 sum -8.519 16.917 -3.814 19.321 Atomic orbital electron populations 1.22489 0.94118 1.04810 1.02582 1.22173 0.94345 0.92294 0.83305 1.21843 1.02293 0.92650 1.02915 1.22495 1.01798 1.03278 0.96540 1.86566 1.69884 1.25496 1.44876 1.23558 0.77108 0.80317 0.87511 1.90590 1.35014 1.69764 1.43101 1.22016 0.98366 0.95900 0.94692 0.87002 1.22072 0.91948 0.98005 1.02417 1.22116 0.95913 0.94440 1.02573 1.22055 0.97171 0.92150 1.01331 0.88327 1.19822 0.78546 0.87187 0.81365 1.90647 1.42232 1.77445 1.33848 1.49688 1.35954 1.11373 1.39581 1.24185 0.86841 1.02783 0.91361 1.19491 0.85598 0.89916 0.85249 1.86052 1.27509 1.89946 1.34918 1.21476 1.01538 1.10044 1.23948 0.90928 1.25075 0.96521 0.95216 0.96273 1.69271 1.12929 1.27170 1.44508 0.86269 0.79122 0.80763 0.80319 1.19426 1.20635 1.20670 1.23317 0.95269 0.81920 1.01185 1.22311 0.97943 0.89658 1.02326 0.92080 0.91143 0.89720 0.91419 0.90466 0.91535 0.89679 0.91149 0.91918 0.91219 0.90188 0.90423 0.90223 0.91514 0.90253 0.75026 0.91656 0.89807 0.91658 0.90488 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 8.37 37.16 0.31 -1.38 16 2 C 0.11 1.11 1.13 -90.62 -0.10 1.01 16 3 C -0.14 -0.98 8.85 37.16 0.33 -0.65 16 4 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 5 O -0.35 -4.00 9.88 -39.25 -0.39 -4.39 16 6 C 0.47 5.98 6.42 36.01 0.23 6.22 16 7 O -0.50 -7.43 11.24 -18.75 -0.21 -7.64 16 8 C -0.09 -1.04 3.36 -90.11 -0.30 -1.34 16 9 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 10 C -0.11 -1.21 6.36 -25.61 -0.16 -1.38 16 11 C -0.11 -1.56 5.51 -25.62 -0.14 -1.71 16 12 C -0.11 -1.59 3.11 -90.05 -0.28 -1.87 16 13 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 14 C 0.54 10.82 7.27 -10.99 -0.08 10.74 16 15 O -0.56 -13.04 16.54 5.56 0.09 -12.95 16 16 N -0.63 -13.08 3.66 -185.40 -0.68 -13.76 16 17 C 0.07 1.46 7.56 -8.65 -0.07 1.40 16 18 C 0.24 5.60 1.57 -91.40 -0.14 5.45 16 19 O -0.57 -14.41 13.53 -35.23 -0.48 -14.89 16 20 C -0.53 -13.01 8.69 -34.44 -0.30 -13.31 16 21 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 22 C 0.07 1.73 5.40 -17.82 -0.10 1.64 16 23 N -0.90 -22.10 11.01 55.43 0.61 -21.49 16 24 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 28 C 0.11 2.29 8.03 -8.53 -0.07 2.22 16 29 C -0.08 -1.20 4.95 -24.68 -0.12 -1.32 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.97 5.89 -51.93 -0.31 0.67 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 1.05 5.89 -51.93 -0.31 0.75 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.83 7.83 -51.93 -0.41 0.42 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.28 7.83 -51.93 -0.41 0.87 16 42 H 0.08 1.05 7.34 -51.93 -0.38 0.66 16 43 H 0.07 1.34 6.74 -51.92 -0.35 0.99 16 44 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 45 H 0.39 10.01 6.33 45.56 0.29 10.30 16 46 H 0.27 6.38 8.31 -40.82 -0.34 6.04 16 47 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 48 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 49 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.09 1.64 6.87 -51.93 -0.36 1.28 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -28.99 396.44 -8.46 -37.45 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -7.68 Total: 13.48 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.68 Total: 4.21 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.07 Total: -35.25 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.98 Total: -39.87 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.99 -8.46 -37.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412034846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.983 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds