Wall clock time and date at job start Sat Apr 11 2020 05:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29033 * 124.91565 * 2 1 4 4 C 1.31785 * 117.12154 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.74639 * 180.02562 * 4 3 2 6 6 C 1.33632 * 114.50326 * 0.02562 * 4 3 2 7 7 C 1.50702 * 126.04028 * 180.02562 * 6 4 3 8 8 C 1.50696 * 109.47629 * 89.99391 * 7 6 4 9 9 O 1.21287 * 119.99595 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00570 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00280 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46956 * 35.00871 * 11 10 8 13 13 C 1.53002 * 109.47037 * 155.00016 * 11 10 8 14 14 N 1.46501 * 109.47237 * 305.00331 * 13 11 10 15 15 C 1.36937 * 120.00070 * 179.97438 * 14 13 11 16 16 H 1.08008 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.38807 * 120.00222 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99862 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00067 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47302 * 60.00334 * 19 17 15 21 21 H 1.48507 * 109.47393 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47585 * 300.00072 * 19 17 15 23 23 C 1.52992 * 109.47337 * 275.00076 * 11 10 8 24 24 C 1.52997 * 109.47482 * 300.00145 * 23 11 10 25 25 C 1.53006 * 109.47223 * 179.97438 * 23 11 10 26 26 C 1.52999 * 109.46961 * 60.00506 * 23 11 10 27 27 S 1.70977 * 124.91714 * 180.31789 * 2 1 3 28 28 H 1.08998 * 109.46961 * 89.97494 * 1 2 3 29 29 H 1.08999 * 109.47412 * 209.97225 * 1 2 3 30 30 H 1.09000 * 109.46820 * 329.97544 * 1 2 3 31 31 H 1.09006 * 109.47325 * 270.00159 * 5 4 3 32 32 H 1.08999 * 109.47336 * 30.00054 * 5 4 3 33 33 H 1.09000 * 109.47528 * 150.00329 * 5 4 3 34 34 H 1.09007 * 109.46719 * 329.99743 * 7 6 4 35 35 H 1.09002 * 109.47501 * 209.99982 * 7 6 4 36 36 H 0.97000 * 119.99554 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.47029 * 65.00199 * 13 11 10 38 38 H 1.08996 * 109.47572 * 185.00142 * 13 11 10 39 39 H 0.96998 * 120.00102 * 0.02562 * 14 13 11 40 40 H 0.97001 * 119.99492 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.47153 * 59.99783 * 24 23 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 24 23 11 43 43 H 1.09004 * 109.47261 * 179.97438 * 24 23 11 44 44 H 1.08993 * 109.46955 * 180.02562 * 25 23 11 45 45 H 1.09000 * 109.47050 * 300.00346 * 25 23 11 46 46 H 1.09001 * 109.47002 * 60.00080 * 25 23 11 47 47 H 1.09002 * 109.46716 * 299.99630 * 26 23 11 48 48 H 1.09000 * 109.47486 * 59.99547 * 26 23 11 49 49 H 1.09001 * 109.47362 * 180.02562 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5307 2.0246 0.0000 6 6 3.9354 -0.4005 -0.0015 7 6 5.3574 -0.8994 -0.0018 8 6 5.8314 -1.0668 1.4189 9 8 5.0875 -0.8070 2.3409 10 7 7.0819 -1.5051 1.6649 11 6 7.5428 -1.6672 3.0460 12 1 6.7133 -2.0015 3.6690 13 6 8.6649 -2.7064 3.0905 14 7 8.1996 -3.9540 2.4797 15 6 9.0379 -5.0342 2.4051 16 1 10.0421 -4.9665 2.7970 17 6 8.5969 -6.2165 1.8268 18 7 7.3730 -6.2992 1.3497 19 14 9.7403 -7.6902 1.7258 20 1 10.1518 -8.0923 3.0948 21 1 9.0346 -8.8203 1.0697 22 1 10.9432 -7.3301 0.9331 23 6 8.0666 -0.3284 3.5694 24 6 9.2311 0.1407 2.6949 25 6 8.5474 -0.4976 5.0121 26 6 6.9445 0.7107 3.5250 27 16 2.4856 -1.4020 -0.0078 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.7666 2.3015 -1.0276 32 1 4.0907 2.8788 0.5145 33 1 5.4434 1.7219 0.5133 34 1 5.9949 -0.1794 -0.5150 35 1 5.4058 -1.8591 -0.5164 36 1 7.6770 -1.7125 0.9275 37 1 9.5284 -2.3325 2.5404 38 1 8.9471 -2.8924 4.1268 39 1 7.2979 -4.0147 2.1273 40 1 7.0650 -7.1253 0.9452 41 1 8.8882 0.2614 1.6673 42 1 10.0305 -0.5996 2.7266 43 1 9.6040 1.0948 3.0676 44 1 8.9201 0.4563 5.3850 45 1 7.7175 -0.8316 5.6348 46 1 9.3467 -1.2381 5.0442 47 1 6.6016 0.8314 2.4974 48 1 6.1149 0.3765 4.1480 49 1 7.3177 1.6647 3.8975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486406252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:42 Heat of formation + Delta-G solvation = 0.509887 kcal Electronic energy + Delta-G solvation = -28335.553067 eV Core-core repulsion = 24617.251357 eV Total energy + Delta-G solvation = -3718.301710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.32071 -39.63065 -37.42535 -34.44604 -33.79835 -33.18790 -31.20065 -30.60138 -29.22041 -27.79012 -27.13601 -26.79049 -25.36604 -23.68060 -22.75252 -21.53856 -20.53484 -18.85342 -18.46186 -17.93288 -17.29133 -16.72214 -15.87983 -15.56829 -15.08568 -14.97368 -14.59358 -14.05300 -13.91233 -13.77096 -13.55509 -13.51037 -13.30091 -13.21191 -13.05175 -12.76217 -12.60081 -12.37810 -12.19097 -12.04941 -12.02119 -11.83897 -11.78032 -11.37152 -11.21899 -11.11205 -11.00791 -10.82284 -10.73763 -10.50383 -10.26579 -9.95576 -9.76336 -9.64304 -9.58069 -9.12822 -8.91486 -8.57398 -8.49861 -6.97437 -5.80841 -3.10278 0.72009 1.38677 1.80822 2.76834 2.92867 3.40466 3.45516 3.46249 3.56231 4.05148 4.53856 4.68709 4.90332 4.93456 4.99281 5.03104 5.10141 5.22247 5.22535 5.27427 5.39822 5.44188 5.51343 5.52871 5.57603 5.64757 5.71805 5.77225 5.79037 5.89891 5.91728 5.92789 6.03966 6.08160 6.12238 6.16202 6.28897 6.31415 6.46157 6.46453 6.50896 6.64688 6.73899 6.97680 7.64772 7.77412 7.86788 8.37259 8.55684 9.49039 10.05266 10.40616 11.41408 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010415 B = 0.003555 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.698088 B = 7873.735611 C = 9918.940136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.035 3.965 3 N -0.473 5.473 4 C 0.071 3.929 5 C -0.075 4.075 6 C -0.197 4.197 7 C -0.068 4.068 8 C 0.516 3.484 9 O -0.531 6.531 10 N -0.707 5.707 11 C 0.151 3.849 12 H 0.085 0.915 13 C 0.142 3.858 14 N -0.731 5.731 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.128 4.128 27 S 0.142 5.858 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.403 0.597 37 H 0.028 0.972 38 H 0.034 0.966 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.060 0.940 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.519 16.331 -3.416 17.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.243 4.243 3 N -0.188 5.188 4 C -0.061 4.061 5 C -0.135 4.135 6 C -0.318 4.318 7 C -0.110 4.110 8 C 0.300 3.700 9 O -0.408 6.408 10 N -0.358 5.358 11 C 0.046 3.954 12 H 0.103 0.897 13 C 0.014 3.986 14 N -0.376 5.376 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.077 4.077 24 C -0.198 4.198 25 C -0.199 4.199 26 C -0.185 4.185 27 S 0.398 5.602 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.238 0.762 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.430 15.810 -2.743 17.683 hybrid contribution 1.205 -0.452 -0.506 1.383 sum -6.225 15.358 -3.249 16.887 Atomic orbital electron populations 1.20396 0.85427 1.04088 1.03577 1.26857 1.01575 0.91531 1.04310 1.66104 1.04408 1.31805 1.16509 1.19995 0.90169 0.93798 1.02132 1.20318 0.96014 0.94780 1.02370 1.24947 0.98636 0.95627 1.12634 1.20078 0.90497 1.04082 0.96355 1.20194 0.81991 0.77220 0.90548 1.90710 1.54608 1.49804 1.45692 1.45893 1.13932 1.66686 1.09276 1.21248 0.97852 0.93892 0.82426 0.89671 1.21094 0.93850 0.86431 0.97227 1.42345 1.15487 1.08395 1.71346 1.19159 0.95109 0.90503 1.32596 0.91266 1.24728 0.96570 0.98006 1.01396 1.69654 1.16233 1.26961 1.45089 0.86283 0.79770 0.82567 0.77618 1.21292 1.21702 1.21285 1.20894 0.95792 0.95416 0.95647 1.21907 0.97868 1.00696 0.99326 1.21886 1.01424 1.01473 0.95080 1.21876 0.97630 0.96955 1.02058 1.84084 0.97115 1.11436 1.67543 0.89840 0.90174 0.89510 0.90916 0.90732 0.90951 0.87195 0.87302 0.76205 0.95392 0.94815 0.78082 0.93455 0.92903 0.91925 0.93252 0.92935 0.92625 0.91914 0.92952 0.92104 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.46 36.00 0.38 -0.27 16 2 C 0.03 0.44 7.39 -13.46 -0.10 0.34 16 3 N -0.47 -6.82 10.53 -8.06 -0.08 -6.90 16 4 C 0.07 0.98 6.74 -84.23 -0.57 0.42 16 5 C -0.08 -0.83 9.82 36.00 0.35 -0.47 16 6 C -0.20 -2.72 5.08 -35.92 -0.18 -2.91 16 7 C -0.07 -0.85 5.63 -29.04 -0.16 -1.01 16 8 C 0.52 7.88 6.18 -10.99 -0.07 7.81 16 9 O -0.53 -9.72 13.16 5.55 0.07 -9.65 16 10 N -0.71 -10.58 3.64 -53.81 -0.20 -10.77 16 11 C 0.15 2.44 1.69 -67.94 -0.11 2.32 16 12 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 13 C 0.14 2.66 5.10 -4.04 -0.02 2.64 16 14 N -0.73 -17.57 5.43 -59.91 -0.33 -17.89 16 15 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 16 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 17 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 19 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.08 -1.02 0.62 -154.51 -0.10 -1.11 16 24 C -0.14 -1.68 7.97 37.16 0.30 -1.38 16 25 C -0.14 -1.78 8.12 37.16 0.30 -1.48 16 26 C -0.13 -1.76 7.00 37.16 0.26 -1.50 16 27 S 0.14 1.88 23.18 -107.50 -2.49 -0.61 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.77 7.35 -51.93 -0.38 0.38 16 34 H 0.11 1.05 7.43 -51.93 -0.39 0.67 16 35 H 0.11 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.40 5.69 8.60 -40.82 -0.35 5.34 16 37 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 38 H 0.03 0.65 6.71 -51.93 -0.35 0.30 16 39 H 0.39 9.92 7.33 -40.82 -0.30 9.62 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.01 16 41 H 0.05 0.61 7.60 -51.93 -0.39 0.21 16 42 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.06 0.81 6.55 -51.93 -0.34 0.47 16 47 H 0.05 0.74 5.78 -51.93 -0.30 0.44 16 48 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -32.53 399.67 -9.28 -41.81 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.01 Total: 11.48 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 0.03 Total: -3.69 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.12 Total: -62.26 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.53 -9.28 -41.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486406252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.322 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds