Wall clock time and date at job start Sat Apr 11 2020 05:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36943 * 119.99845 * 2 1 4 4 H 1.08001 * 119.99959 * 322.03561 * 3 2 1 5 5 C 1.38808 * 119.99613 * 142.03649 * 3 2 1 6 6 N 1.31620 * 120.00034 * 157.02075 * 5 3 2 7 7 Si 1.86796 * 120.00400 * 337.02148 * 5 3 2 8 8 H 1.48497 * 109.47387 * 95.67912 * 7 5 3 9 9 H 1.48500 * 109.47466 * 215.68004 * 7 5 3 10 10 H 1.48501 * 109.46959 * 335.67791 * 7 5 3 11 11 C 1.46496 * 120.00195 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47358 * 89.99736 * 11 2 1 13 13 C 1.53005 * 109.47458 * 180.02562 * 12 11 2 14 14 N 1.46498 * 109.47293 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99978 * 180.02562 * 14 13 12 16 16 O 1.21683 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.46684 * 120.00046 * 179.97438 * 15 14 13 18 18 C 1.35664 * 126.12846 * 359.97269 * 17 15 14 19 19 N 1.30946 * 114.18786 * 179.75262 * 18 17 15 20 20 C 1.29429 * 117.36512 * 0.51665 * 19 18 17 21 21 C 1.50696 * 124.80727 * 179.76653 * 20 19 18 22 22 C 1.53001 * 109.47069 * 89.69964 * 21 20 19 23 23 C 1.52992 * 109.47230 * 60.00071 * 22 21 20 24 24 C 1.53000 * 109.47112 * 300.00097 * 22 21 20 25 25 C 1.52998 * 109.47301 * 180.02562 * 22 21 20 26 26 S 1.70956 * 110.38730 * 359.50330 * 20 19 18 27 27 H 1.09001 * 109.47496 * 265.65314 * 1 2 3 28 28 H 1.09006 * 109.46877 * 25.64676 * 1 2 3 29 29 H 1.08998 * 109.47251 * 145.64441 * 1 2 3 30 30 H 0.97006 * 120.00795 * 180.02562 * 6 5 3 31 31 H 1.09005 * 109.47101 * 329.99943 * 11 2 1 32 32 H 1.08993 * 109.47262 * 210.00317 * 11 2 1 33 33 H 1.09000 * 109.47413 * 60.00461 * 12 11 2 34 34 H 1.09002 * 109.47564 * 300.00657 * 12 11 2 35 35 H 1.08996 * 109.47126 * 59.99904 * 13 12 11 36 36 H 1.08997 * 109.46567 * 300.00156 * 13 12 11 37 37 H 0.96998 * 120.00120 * 359.97438 * 14 13 12 38 38 H 1.08000 * 122.90527 * 0.02562 * 18 17 15 39 39 H 1.09004 * 109.46943 * 329.70048 * 21 20 19 40 40 H 1.08996 * 109.47240 * 209.70142 * 21 20 19 41 41 H 1.09005 * 109.47490 * 300.00384 * 23 22 21 42 42 H 1.08999 * 109.47424 * 59.99927 * 23 22 21 43 43 H 1.08999 * 109.47162 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47253 * 179.97438 * 24 22 21 45 45 H 1.09004 * 109.47206 * 300.00104 * 24 22 21 46 46 H 1.09004 * 109.47351 * 59.99945 * 24 22 21 47 47 H 1.08996 * 109.46863 * 300.00090 * 25 22 21 48 48 H 1.09004 * 109.47087 * 59.99853 * 25 22 21 49 49 H 1.08999 * 109.47228 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 1.7810 2.0223 -0.5754 5 6 3.3174 1.3131 0.7395 6 7 4.2044 2.2304 0.4166 7 14 3.6304 0.1824 2.1931 8 1 4.4679 -0.9638 1.7573 9 1 4.3368 0.9336 3.2616 10 1 2.3350 -0.3216 2.7159 11 6 2.1975 -1.2687 -0.0006 12 6 2.4525 -1.7098 -1.4432 13 6 3.2170 -3.0351 -1.4438 14 7 3.4617 -3.4571 -2.8252 15 6 4.1234 -4.6050 -3.0719 16 8 4.5181 -5.2906 -2.1473 17 6 4.3679 -5.0279 -4.4551 18 6 3.9850 -4.3634 -5.5742 19 7 4.3306 -4.9515 -6.6920 20 6 4.9706 -6.0728 -6.6011 21 6 5.4427 -6.8913 -7.7750 22 6 6.8521 -6.4478 -8.1722 23 6 7.8032 -6.6537 -6.9916 24 6 6.8312 -4.9675 -8.5581 25 6 7.3312 -7.2784 -9.3644 26 16 5.2110 -6.4901 -4.9608 27 1 -0.3634 -0.0779 1.0247 28 1 -0.3633 0.9265 -0.4448 29 1 -0.3633 -0.8484 -0.5799 30 1 5.0207 2.3191 0.9331 31 1 1.6084 -2.0286 0.5130 32 1 3.1498 -1.1386 0.5133 33 1 3.0416 -0.9500 -1.9567 34 1 1.5001 -1.8398 -1.9572 35 1 2.6276 -3.7948 -0.9304 36 1 4.1693 -2.9053 -0.9298 37 1 3.1467 -2.9108 -3.5622 38 1 3.4458 -3.4281 -5.5456 39 1 4.7651 -6.7446 -8.6162 40 1 5.4576 -7.9459 -7.5001 41 1 7.4617 -6.0617 -6.1424 42 1 7.8181 -7.7083 -6.7166 43 1 8.8072 -6.3373 -7.2743 44 1 7.8354 -4.6514 -8.8406 45 1 6.1537 -4.8208 -9.3992 46 1 6.4898 -4.3754 -7.7090 47 1 7.3460 -8.3331 -9.0899 48 1 6.6536 -7.1314 -10.2054 49 1 8.3352 -6.9622 -9.6476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490268107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:44 Heat of formation + Delta-G solvation = -9.271595 kcal Electronic energy + Delta-G solvation = -26599.697744 eV Core-core repulsion = 22880.971877 eV Total energy + Delta-G solvation = -3718.725867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37172 -40.42558 -38.38398 -38.18748 -36.24569 -33.91701 -33.00787 -31.74159 -29.43299 -28.22104 -28.13576 -28.07789 -26.86839 -25.43855 -23.66295 -22.79998 -22.50779 -20.88019 -20.02255 -18.98903 -18.71065 -18.26905 -17.41724 -16.91378 -16.81262 -16.35275 -15.91992 -15.75574 -15.56297 -15.35727 -15.19275 -14.98481 -14.88238 -14.60004 -14.41074 -14.04553 -13.97450 -13.42028 -13.39512 -13.00693 -12.91203 -12.74288 -12.70148 -12.65646 -12.60071 -12.53365 -12.38185 -12.17948 -11.92671 -11.77273 -11.73888 -11.62186 -11.50316 -11.40303 -10.66184 -10.63678 -10.55827 -10.24480 -9.89676 -8.77755 -8.22835 -5.60058 -0.85353 0.06811 0.61269 1.28966 1.32908 1.39370 1.49841 2.03728 2.09063 2.39609 2.97899 3.02279 3.40771 3.64432 3.74100 3.80451 3.89720 4.03082 4.06065 4.16742 4.20135 4.36510 4.49585 4.50484 4.57550 4.69387 4.70937 4.74178 4.76976 4.81847 4.87833 4.91742 4.94860 5.01262 5.06133 5.08760 5.14395 5.20432 5.20887 5.23871 5.35007 5.39409 5.42752 5.49289 5.92892 6.15277 6.31428 6.52666 6.96916 6.98805 7.61892 8.04019 8.96705 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019773 B = 0.002065 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.701602 B =13553.405584 C =13664.994560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.626 5.626 3 C -0.258 4.258 4 H 0.044 0.956 5 C -0.018 4.018 6 N -0.945 5.945 7 Si 0.937 3.063 8 H -0.275 1.275 9 H -0.309 1.309 10 H -0.260 1.260 11 C 0.134 3.866 12 C -0.128 4.128 13 C 0.129 3.871 14 N -0.702 5.702 15 C 0.591 3.409 16 O -0.581 6.581 17 C -0.328 4.328 18 C 0.107 3.893 19 N -0.491 5.491 20 C 0.067 3.933 21 C -0.042 4.042 22 C -0.059 4.059 23 C -0.157 4.157 24 C -0.140 4.140 25 C -0.136 4.136 26 S 0.227 5.773 27 H 0.013 0.987 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.262 0.738 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.415 0.585 38 H 0.200 0.800 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.036 0.964 47 H 0.069 0.931 48 H 0.064 0.936 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -23.876 -20.938 31.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.350 5.350 3 C -0.388 4.388 4 H 0.062 0.938 5 C -0.215 4.215 6 N -0.589 5.589 7 Si 0.766 3.234 8 H -0.202 1.202 9 H -0.237 1.237 10 H -0.184 1.184 11 C 0.008 3.992 12 C -0.168 4.168 13 C 0.005 3.995 14 N -0.354 5.354 15 C 0.378 3.622 16 O -0.462 6.462 17 C -0.452 4.452 18 C -0.053 4.053 19 N -0.205 5.205 20 C -0.207 4.207 21 C -0.082 4.082 22 C -0.061 4.061 23 C -0.214 4.214 24 C -0.198 4.198 25 C -0.193 4.193 26 S 0.486 5.514 27 H 0.031 0.969 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.252 0.748 38 H 0.217 0.783 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.055 0.945 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.402 -24.942 -20.228 32.293 hybrid contribution -0.155 1.547 0.865 1.779 sum 3.247 -23.395 -19.363 30.541 Atomic orbital electron populations 1.21214 0.82104 1.00506 0.98432 1.44192 1.02418 1.01364 1.87058 1.18683 1.05813 0.91650 1.22688 0.93849 1.26055 0.97044 0.98354 1.00035 1.69993 1.09252 1.38842 1.40804 0.85954 0.78227 0.78410 0.80827 1.20226 1.23732 1.18397 1.21142 0.95663 0.87425 0.94974 1.22120 1.00593 0.94266 0.99850 1.21303 0.99761 0.96507 0.81969 1.45700 1.56952 1.22810 1.09893 1.17009 0.77556 0.81052 0.86593 1.90815 1.53451 1.55417 1.46551 1.25605 1.16129 1.05297 0.98214 1.22539 0.97382 1.00779 0.84566 1.66257 1.14995 1.08731 1.30557 1.28016 0.97494 0.95544 0.99670 1.20748 0.97157 0.97872 0.92466 1.20516 0.92770 0.96169 0.96636 1.22116 0.99701 1.02514 0.97092 1.21877 1.01688 0.95029 1.01166 1.21819 1.01596 0.99737 0.96146 1.84052 1.48329 1.18914 1.00076 0.96869 0.93991 0.91885 0.92856 0.91237 0.95220 0.92764 0.89636 0.90518 0.93346 0.74805 0.78321 0.87387 0.87074 0.94310 0.90895 0.91645 0.92417 0.92031 0.94493 0.91180 0.91678 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.46 10.70 127.77 1.37 5.83 16 2 N -0.63 -28.44 2.47 -726.96 -1.79 -30.24 16 3 C -0.26 -14.42 9.88 84.03 0.83 -13.59 16 4 H 0.04 2.68 8.06 -2.91 -0.02 2.65 16 5 C -0.02 -1.05 5.29 84.86 0.45 -0.60 16 6 N -0.94 -58.82 13.97 21.65 0.30 -58.51 16 7 Si 0.94 46.43 25.10 68.60 1.72 48.15 16 8 H -0.28 -13.10 6.68 99.48 0.66 -12.43 16 9 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 10 H -0.26 -12.30 7.11 99.48 0.71 -11.60 16 11 C 0.13 5.31 4.53 86.38 0.39 5.70 16 12 C -0.13 -4.20 5.65 30.59 0.17 -4.02 16 13 C 0.13 3.90 5.67 86.38 0.49 4.39 16 14 N -0.70 -18.37 5.54 -467.09 -2.59 -20.95 16 15 C 0.59 17.34 7.79 86.45 0.67 18.01 16 16 O -0.58 -21.38 16.96 -4.29 -0.07 -21.45 16 17 C -0.33 -7.79 6.48 23.88 0.15 -7.64 16 18 C 0.11 2.14 10.93 84.23 0.92 3.06 16 19 N -0.49 -9.72 9.64 -190.30 -1.84 -11.56 16 20 C 0.07 1.11 4.93 88.46 0.44 1.55 16 21 C -0.04 -0.43 4.86 29.85 0.15 -0.28 16 22 C -0.06 -0.60 0.80 -52.18 -0.04 -0.64 16 23 C -0.16 -1.80 8.01 71.98 0.58 -1.23 16 24 C -0.14 -1.92 8.17 71.98 0.59 -1.33 16 25 C -0.14 -0.87 8.47 71.98 0.61 -0.26 16 26 S 0.23 4.43 21.38 -56.49 -1.21 3.23 16 27 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.04 1.55 8.00 -2.38 -0.02 1.53 16 29 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.26 15.56 8.31 -92.70 -0.77 14.79 16 31 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 32 H 0.03 1.34 3.38 -2.39 -0.01 1.34 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 8.44 7.18 -92.71 -0.67 7.77 16 38 H 0.20 2.97 7.15 -2.91 -0.02 2.95 16 39 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.04 0.59 6.03 -2.38 -0.01 0.58 16 42 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.04 0.67 6.63 -2.38 -0.02 0.66 16 47 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 49 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 Total: -1.00 -73.21 403.04 2.52 -70.69 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.23 Total: 11.70 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 7.76 Total: 8.95 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -5.91 Total: -121.26 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.72 Total: 48.15 kcal Atomic # 16 Polarization: 4.43 SS G_CDS: -1.21 Total: 3.23 kcal Total: -73.21 2.52 -70.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490268107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.417 kcal (2) G-P(sol) polarization free energy of solvation -73.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds