Wall clock time and date at job start Sat Apr 11 2020 05:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46918 * 2 1 4 4 H 1.08991 * 109.47210 * 305.00551 * 3 2 1 5 5 C 1.53000 * 109.46846 * 185.00050 * 3 2 1 6 6 N 1.46499 * 109.46840 * 185.00008 * 5 3 2 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.33636 * 122.74947 * 85.02213 * 10 9 7 12 12 S 1.76196 * 107.92273 * 179.97438 * 11 10 9 13 13 C 1.70979 * 90.28432 * 359.97438 * 12 11 10 14 14 C 1.50699 * 124.91753 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47148 * 239.98038 * 14 13 12 16 16 C 1.53001 * 109.47131 * 359.97438 * 14 13 12 17 17 C 1.52999 * 109.46963 * 119.97957 * 14 13 12 18 18 N 1.29029 * 110.16493 * 359.73812 * 13 12 11 19 19 N 1.46504 * 109.46878 * 65.00452 * 3 2 1 20 20 C 1.36929 * 119.99940 * 274.99762 * 19 3 2 21 21 H 1.08007 * 120.00260 * 359.97438 * 20 19 3 22 22 C 1.38808 * 120.00410 * 180.02562 * 20 19 3 23 23 N 1.31620 * 120.00574 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99716 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47288 * 90.00101 * 24 22 20 26 26 H 1.48504 * 109.47017 * 210.00442 * 24 22 20 27 27 H 1.48498 * 109.47019 * 329.99930 * 24 22 20 28 28 H 1.08998 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.47313 * 299.99451 * 1 2 3 30 30 H 1.08993 * 109.47728 * 59.99548 * 1 2 3 31 31 H 1.09000 * 109.47255 * 240.00648 * 2 1 3 32 32 H 1.08994 * 109.47464 * 119.99975 * 2 1 3 33 33 H 1.09002 * 109.47398 * 305.00335 * 5 3 2 34 34 H 1.09001 * 109.47194 * 65.00515 * 5 3 2 35 35 H 0.97000 * 120.00420 * 0.02562 * 6 5 3 36 36 H 1.09002 * 109.47152 * 300.00160 * 9 7 6 37 37 H 1.09001 * 109.46980 * 60.00059 * 9 7 6 38 38 H 1.07996 * 126.04161 * 0.02562 * 11 10 9 39 39 H 1.08998 * 109.47369 * 60.00105 * 15 14 13 40 40 H 1.09000 * 109.47026 * 180.02562 * 15 14 13 41 41 H 1.09008 * 109.46841 * 299.99796 * 15 14 13 42 42 H 1.09000 * 109.47444 * 59.99710 * 16 14 13 43 43 H 1.08999 * 109.47178 * 179.97438 * 16 14 13 44 44 H 1.08998 * 109.47234 * 299.99801 * 16 14 13 45 45 H 1.08994 * 109.47410 * 59.99925 * 17 14 13 46 46 H 1.09004 * 109.47073 * 180.02562 * 17 14 13 47 47 H 1.09000 * 109.46715 * 299.99741 * 17 14 13 48 48 H 0.96996 * 120.00090 * 94.99890 * 19 3 2 49 49 H 0.97004 * 120.00299 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0629 2.8169 -0.0060 7 6 5.3856 3.0631 -0.0869 8 8 6.1633 2.1485 -0.2583 9 6 5.8981 4.4749 0.0369 10 6 7.3999 4.4769 -0.0883 11 6 8.0269 4.5118 -1.2679 12 16 9.7618 4.5012 -0.9603 13 6 9.4715 4.4517 0.7239 14 6 10.5428 4.4189 1.7833 15 6 10.3961 3.1448 2.6177 16 6 11.9198 4.4361 1.1168 17 6 10.4000 5.6422 2.6910 18 7 8.2023 4.4514 0.9567 19 7 1.6524 2.0975 1.2519 20 6 0.4156 2.6734 1.3690 21 1 -0.2741 2.6453 0.5383 22 6 0.0486 3.2944 2.5549 23 7 -1.1404 3.8476 2.6676 24 14 1.2422 3.3450 3.9910 25 1 2.0770 4.5695 3.8979 26 1 0.4816 3.3601 5.2664 27 1 2.1166 2.1455 3.9503 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.9954 0.8311 0.6658 34 1 3.8498 1.0378 -1.0961 35 1 3.4409 3.5484 0.1316 36 1 5.4671 5.0886 -0.7541 37 1 5.6135 4.8809 1.0076 38 1 7.5539 4.5420 -2.2383 39 1 10.4978 2.2733 1.9710 40 1 11.1707 3.1213 3.3842 41 1 9.4150 3.1325 3.0926 42 1 12.0244 5.3437 0.5222 43 1 12.6947 4.4129 1.8830 44 1 12.0215 3.5646 0.4702 45 1 9.4190 5.6299 3.1658 46 1 11.1751 5.6188 3.4570 47 1 10.5045 6.5498 2.0965 48 1 2.2719 2.1231 1.9978 49 1 -1.3968 4.2818 3.4963 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495079848.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:47 Heat of formation + Delta-G solvation = -2.848600 kcal Electronic energy + Delta-G solvation = -27215.625664 eV Core-core repulsion = 23497.178320 eV Total energy + Delta-G solvation = -3718.447345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42365 -39.18018 -37.14551 -36.70718 -33.77941 -32.39867 -31.77620 -30.28315 -28.84794 -27.75798 -27.52250 -27.42985 -25.12998 -23.50578 -22.43837 -20.78070 -20.25073 -19.69452 -19.43054 -17.84632 -17.55862 -16.76459 -16.03995 -15.59070 -15.52104 -15.01232 -14.74453 -14.39638 -14.16477 -14.06832 -13.93637 -13.41622 -13.24696 -13.14451 -13.03559 -12.83489 -12.65188 -12.52579 -12.43928 -12.07422 -11.97673 -11.72079 -11.53363 -11.41435 -11.32192 -11.22132 -11.14733 -10.98699 -10.75114 -10.39964 -10.30089 -10.04069 -9.73168 -9.66769 -9.50997 -9.43125 -8.99938 -8.79477 -8.75997 -7.36383 -5.83400 -3.19488 0.64358 1.26880 1.64279 2.64177 2.84132 3.33069 3.38534 3.42855 3.53100 3.80622 4.41958 4.53494 4.57897 4.62378 4.85777 5.02969 5.10320 5.16470 5.20778 5.21482 5.30442 5.30825 5.37285 5.44375 5.44898 5.53434 5.60778 5.62180 5.69085 5.75663 5.77168 5.88010 5.89830 5.95690 6.02763 6.06007 6.14197 6.26675 6.46456 6.52098 6.57435 6.78651 6.93195 7.27535 7.69587 7.80253 7.92277 8.34837 8.45497 9.12921 9.85447 10.04931 11.34183 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014341 B = 0.002641 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.964549 B =10600.781753 C =11592.206888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.063 0.937 5 C 0.113 3.887 6 N -0.716 5.716 7 C 0.515 3.485 8 O -0.545 6.545 9 C -0.072 4.072 10 C 0.096 3.904 11 C -0.249 4.249 12 S 0.113 5.887 13 C 0.063 3.937 14 C 0.011 3.989 15 C -0.135 4.135 16 C -0.153 4.153 17 C -0.134 4.134 18 N -0.459 5.459 19 N -0.747 5.747 20 C -0.242 4.242 21 H 0.095 0.905 22 C 0.008 3.992 23 N -0.931 5.931 24 Si 0.879 3.121 25 H -0.284 1.284 26 H -0.292 1.292 27 H -0.278 1.278 28 H 0.032 0.968 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.411 0.589 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.174 0.826 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.362 0.638 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.245 2.476 -6.592 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 C 0.059 3.941 4 H 0.081 0.919 5 C -0.011 4.011 6 N -0.369 5.369 7 C 0.300 3.700 8 O -0.422 6.422 9 C -0.115 4.115 10 C -0.036 4.036 11 C -0.388 4.388 12 S 0.369 5.631 13 C -0.216 4.216 14 C 0.007 3.993 15 C -0.194 4.194 16 C -0.211 4.211 17 C -0.193 4.193 18 N -0.172 5.172 19 N -0.390 5.390 20 C -0.371 4.371 21 H 0.112 0.888 22 C -0.188 4.188 23 N -0.578 5.578 24 Si 0.709 3.291 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.051 0.949 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.247 0.753 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.192 0.808 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.195 0.805 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 25.250 1.925 -6.878 26.240 hybrid contribution -0.679 0.291 1.200 1.409 sum 24.571 2.216 -5.678 25.315 Atomic orbital electron populations 1.21779 0.95195 0.99711 1.03768 1.22042 0.97353 0.97909 1.00082 1.20543 0.89846 0.92947 0.90775 0.91925 1.21706 0.95477 0.82618 1.01337 1.45983 1.07010 1.10860 1.73015 1.20293 0.82487 0.90535 0.76674 1.90685 1.56006 1.46323 1.49221 1.20217 0.89107 0.95995 1.06150 1.19430 0.95923 1.01315 0.86935 1.26737 0.95927 1.12897 1.03271 1.83759 1.05976 1.68668 1.04668 1.26984 0.94704 1.03325 0.96629 1.19224 0.90145 0.98081 0.91829 1.21843 1.03017 0.95237 0.99253 1.22019 0.95280 1.02616 1.01178 1.21838 1.03051 0.95662 0.98705 1.65889 1.02015 1.15392 1.33930 1.42843 1.16935 1.67636 1.11614 1.19047 0.90847 1.27392 0.99865 0.88757 1.24652 0.96369 1.00335 0.97494 1.69690 1.19292 1.42054 1.26803 0.86650 0.80995 0.77844 0.83599 1.21062 1.21830 1.20384 0.94867 0.89361 0.93869 0.93592 0.92696 0.91984 0.91540 0.75319 0.87133 0.86928 0.80842 0.92438 0.91695 0.91332 0.91870 0.90727 0.91824 0.91329 0.91673 0.92550 0.80496 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.22 5.61 -26.73 -0.15 -2.37 16 3 C 0.17 2.96 2.59 -67.92 -0.18 2.78 16 4 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 5 C 0.11 1.81 5.23 -4.04 -0.02 1.79 16 6 N -0.72 -11.04 5.39 -60.29 -0.32 -11.36 16 7 C 0.52 8.10 7.82 -10.98 -0.09 8.02 16 8 O -0.54 -10.39 16.03 5.56 0.09 -10.31 16 9 C -0.07 -0.92 6.11 -29.03 -0.18 -1.10 16 10 C 0.10 1.31 5.23 -84.23 -0.44 0.87 16 11 C -0.25 -2.97 11.14 29.12 0.32 -2.65 16 12 S 0.11 1.17 21.57 -107.50 -2.32 -1.15 16 13 C 0.06 0.74 5.78 -13.46 -0.08 0.66 16 14 C 0.01 0.10 0.99 -155.66 -0.15 -0.05 16 15 C -0.13 -1.28 8.45 37.16 0.31 -0.96 16 16 C -0.15 -1.04 7.54 37.16 0.28 -0.76 16 17 C -0.13 -1.12 8.45 37.16 0.31 -0.81 16 18 N -0.46 -6.56 10.51 -8.06 -0.08 -6.64 16 19 N -0.75 -15.92 4.31 -53.42 -0.23 -16.15 16 20 C -0.24 -6.16 8.23 -15.06 -0.12 -6.29 16 21 H 0.09 2.58 7.56 -52.48 -0.40 2.19 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -27.86 13.97 55.49 0.78 -27.08 16 24 Si 0.88 21.34 27.74 -169.99 -4.71 16.63 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 1.90 5.99 -51.92 -0.31 1.59 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.41 6.18 8.14 -40.82 -0.33 5.84 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.06 0.40 7.92 -51.93 -0.41 -0.02 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.44 7.92 -51.93 -0.41 0.02 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 407.88 15.07 6.15 6.15 Total: -1.00 -32.12 407.88 -9.04 -41.16 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.45 Total: 11.80 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: 0.14 Total: -61.24 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.71 Total: 16.63 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.32 Total: -1.15 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.12 -9.04 -41.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495079848.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.312 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds