Wall clock time and date at job start Sat Apr 11 2020 05:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 122.90799 * 2 1 4 4 C 1.29423 * 117.36393 * 179.97438 * 3 2 1 5 5 C 1.50708 * 124.79981 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47141 * 60.02437 * 5 4 3 7 7 C 1.52992 * 109.47025 * 300.02044 * 5 4 3 8 8 S 1.70949 * 110.39328 * 0.26003 * 4 3 2 9 9 C 1.35663 * 122.90274 * 179.97438 * 2 1 3 10 10 C 1.46683 * 126.13146 * 0.04236 * 9 2 1 11 11 O 1.21688 * 119.99624 * 359.97438 * 10 9 2 12 12 N 1.34778 * 120.00139 * 179.97438 * 10 9 2 13 13 C 1.46493 * 120.00025 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47152 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.47421 * 294.99820 * 14 13 12 16 16 N 1.46499 * 109.47227 * 55.00244 * 14 13 12 17 17 C 1.36942 * 119.99996 * 204.99807 * 16 14 13 18 18 H 1.07996 * 120.00009 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99775 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99763 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00171 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47209 * 89.99882 * 21 19 17 23 23 H 1.48502 * 109.47172 * 210.00441 * 21 19 17 24 24 H 1.48510 * 109.47042 * 329.99976 * 21 19 17 25 25 C 1.53000 * 109.47389 * 175.00587 * 14 13 12 26 26 C 1.52995 * 109.47389 * 179.97438 * 25 14 13 27 27 C 1.53002 * 109.47075 * 299.99724 * 25 14 13 28 28 H 1.09000 * 109.46881 * 90.02474 * 1 2 3 29 29 H 1.09000 * 109.47483 * 210.02664 * 1 2 3 30 30 H 1.09005 * 109.46997 * 330.03115 * 1 2 3 31 31 H 1.09002 * 109.46828 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47153 * 299.99670 * 6 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47261 * 59.99842 * 6 5 4 35 35 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 36 36 H 1.08996 * 109.47747 * 300.00019 * 7 5 4 37 37 H 1.09002 * 109.47103 * 60.00431 * 7 5 4 38 38 H 0.97000 * 119.99782 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47687 * 300.00737 * 13 12 10 40 40 H 1.09003 * 109.47367 * 60.00536 * 13 12 10 41 41 H 0.96999 * 120.00242 * 25.00344 * 16 14 13 42 42 H 0.97003 * 119.99609 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47575 * 59.99317 * 25 14 13 44 44 H 1.09000 * 109.47611 * 179.97438 * 26 25 14 45 45 H 1.08999 * 109.47575 * 299.99473 * 26 25 14 46 46 H 1.09003 * 109.47437 * 59.99908 * 26 25 14 47 47 H 1.09001 * 109.46641 * 59.99849 * 27 25 14 48 48 H 1.09000 * 109.47378 * 179.97438 * 27 25 14 49 49 H 1.09001 * 109.47262 * 300.00491 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5065 0.9743 0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2626 2.9791 1.2489 7 6 4.2627 2.9780 -1.2495 8 16 3.9446 -0.6781 -0.0062 9 6 2.2439 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0002 11 8 0.5173 -2.6997 0.0000 12 7 2.5678 -3.5557 0.0003 13 6 2.0436 -4.9236 0.0006 14 6 3.2081 -5.9160 0.0012 15 1 3.7666 -5.8215 -0.9301 16 7 4.0933 -5.6294 1.1328 17 6 5.4115 -5.9970 1.0812 18 1 5.7985 -6.4977 0.2061 19 6 6.2501 -5.7259 2.1537 20 7 7.5171 -6.0787 2.1038 21 14 5.5804 -4.8605 3.6676 22 1 5.0800 -5.8705 4.6344 23 1 6.6611 -4.0624 4.3002 24 1 4.4674 -3.9605 3.2716 25 6 2.6642 -7.3405 0.1271 26 6 3.8286 -8.3329 0.1271 27 6 1.8802 -7.4734 1.4343 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 5.5007 1.7345 0.0002 32 1 3.2442 3.3675 1.2487 33 1 4.9686 3.8096 1.2488 34 1 4.4190 2.3699 2.1392 35 1 4.9686 3.8085 -1.2501 36 1 4.4191 2.3681 -2.1393 37 1 3.2442 3.3664 -1.2497 38 1 3.5258 -3.4033 0.0009 39 1 1.4338 -5.0789 0.8906 40 1 1.4337 -5.0792 -0.8893 41 1 3.7457 -5.1795 1.9187 42 1 8.1032 -5.8889 2.8531 43 1 2.0055 -7.5537 -0.7147 44 1 3.4412 -9.3477 0.2173 45 1 4.3868 -8.2383 -0.8043 46 1 4.4876 -8.1199 0.9689 47 1 1.0506 -6.7664 1.4338 48 1 1.4923 -8.4881 1.5238 49 1 2.5388 -7.2601 2.2763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496641441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:02 Heat of formation + Delta-G solvation = -2.696625 kcal Electronic energy + Delta-G solvation = -27884.066458 eV Core-core repulsion = 24165.625703 eV Total energy + Delta-G solvation = -3718.440755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44263 -39.23924 -37.49309 -35.77497 -34.09229 -32.95876 -31.27521 -30.74123 -29.21339 -27.46047 -27.45333 -26.46465 -25.40239 -23.74188 -22.41192 -21.40204 -20.95804 -19.55353 -18.81868 -17.95688 -17.64467 -16.59365 -15.92114 -15.69282 -15.27724 -15.17490 -14.53439 -14.38933 -14.30900 -14.01204 -13.60272 -13.57497 -13.34838 -13.22561 -12.93774 -12.60744 -12.55187 -12.54788 -12.26299 -12.11223 -11.89342 -11.47052 -11.42119 -11.40025 -11.27748 -11.25737 -11.09987 -10.92167 -10.61378 -10.37619 -10.13810 -10.02795 -9.94907 -9.66473 -9.54913 -9.50087 -8.99869 -8.94060 -8.70588 -7.38449 -5.86016 -3.21880 0.19531 1.11819 1.53881 2.39428 3.22016 3.29032 3.30165 3.33553 3.39783 3.78789 4.49090 4.50147 4.68003 4.76252 4.88499 5.06131 5.13962 5.16482 5.23432 5.36628 5.37755 5.47092 5.54821 5.59278 5.61126 5.64831 5.68640 5.70510 5.74689 5.80098 5.93527 5.95406 5.99163 5.99817 6.22947 6.27627 6.30108 6.46692 6.52804 6.59195 6.65099 6.76960 6.91172 7.33442 7.51419 7.66753 7.89747 8.26253 8.32267 9.09957 9.82345 10.01578 11.31566 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003775 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.079110 B = 7415.927969 C = 9010.258211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 N -0.475 5.475 4 C 0.062 3.938 5 C -0.020 4.020 6 C -0.140 4.140 7 C -0.139 4.139 8 S 0.178 5.822 9 C -0.300 4.300 10 C 0.594 3.406 11 O -0.534 6.534 12 N -0.710 5.710 13 C 0.109 3.891 14 C 0.172 3.828 15 H 0.063 0.937 16 N -0.744 5.744 17 C -0.241 4.241 18 H 0.095 0.905 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.874 3.126 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C -0.106 4.106 26 C -0.141 4.141 27 C -0.144 4.144 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.407 0.593 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.054 0.946 44 H 0.031 0.969 45 H 0.043 0.957 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.043 0.957 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 13.782 -5.652 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.007 3.993 3 N -0.190 5.190 4 C -0.213 4.213 5 C -0.042 4.042 6 C -0.199 4.199 7 C -0.198 4.198 8 S 0.437 5.563 9 C -0.424 4.424 10 C 0.379 3.621 11 O -0.414 6.414 12 N -0.361 5.361 13 C -0.015 4.015 14 C 0.063 3.937 15 H 0.081 0.919 16 N -0.388 5.388 17 C -0.371 4.371 18 H 0.113 0.887 19 C -0.186 4.186 20 N -0.576 5.576 21 Si 0.704 3.296 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.204 1.204 25 C -0.127 4.127 26 C -0.198 4.198 27 C -0.201 4.201 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.244 0.756 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.524 13.480 -5.730 16.947 hybrid contribution -0.670 0.538 1.243 1.511 sum -9.194 14.019 -4.487 17.355 Atomic orbital electron populations 1.20625 0.86109 1.04308 1.03497 1.20626 0.98517 0.84911 0.95272 1.65981 1.04274 1.31218 1.17481 1.27430 0.94488 0.98526 1.00856 1.19927 0.95182 0.91075 0.98027 1.21809 1.03042 0.99257 0.95779 1.21801 1.03057 0.99241 0.95687 1.84349 1.05103 1.01585 1.65227 1.25528 0.96279 0.99280 1.21350 1.16677 0.86149 0.82485 0.76816 1.90746 1.14244 1.85116 1.51331 1.45944 1.10381 1.06030 1.73768 1.21885 0.97365 0.80023 1.02236 1.20537 0.89448 0.91070 0.92695 0.91929 1.42818 1.07926 1.71421 1.16595 1.19043 0.83240 1.31989 1.02823 0.88695 1.24615 0.95392 1.00845 0.97705 1.69685 1.03962 1.52036 1.31958 0.86726 0.77998 0.79990 0.84857 1.21083 1.21758 1.20399 1.21584 0.96985 0.97285 0.96889 1.21837 0.98275 0.96053 1.03623 1.21818 0.99374 1.00035 0.98858 0.90318 0.88196 0.91013 0.88916 0.91390 0.91449 0.92365 0.91466 0.92420 0.91395 0.75632 0.91032 0.91140 0.80515 0.93022 0.92803 0.94941 0.93819 0.89142 0.93562 0.93834 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.69 36.00 0.35 -0.74 16 2 C 0.15 2.10 6.79 -83.89 -0.57 1.53 16 3 N -0.47 -6.46 10.48 -7.70 -0.08 -6.54 16 4 C 0.06 0.76 5.90 -13.29 -0.08 0.68 16 5 C -0.02 -0.18 3.35 -91.77 -0.31 -0.49 16 6 C -0.14 -1.17 9.17 37.16 0.34 -0.83 16 7 C -0.14 -1.10 9.17 37.15 0.34 -0.76 16 8 S 0.18 2.37 22.29 -107.50 -2.40 -0.02 16 9 C -0.30 -4.58 6.48 -37.09 -0.24 -4.82 16 10 C 0.59 9.91 7.78 -12.85 -0.10 9.81 16 11 O -0.53 -9.69 14.27 5.20 0.07 -9.61 16 12 N -0.71 -11.62 5.38 -61.62 -0.33 -11.95 16 13 C 0.11 1.72 5.02 -4.05 -0.02 1.70 16 14 C 0.17 2.97 2.35 -67.93 -0.16 2.81 16 15 H 0.06 1.12 8.08 -51.92 -0.42 0.70 16 16 N -0.74 -15.46 3.48 -53.42 -0.19 -15.65 16 17 C -0.24 -6.02 8.05 -15.06 -0.12 -6.14 16 18 H 0.10 2.56 7.63 -52.49 -0.40 2.16 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -27.32 13.97 55.49 0.78 -26.55 16 21 Si 0.87 20.97 27.74 -169.99 -4.71 16.25 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 25 C -0.11 -1.69 2.80 -90.62 -0.25 -1.95 16 26 C -0.14 -2.48 8.26 37.16 0.31 -2.17 16 27 C -0.14 -2.24 8.69 37.16 0.32 -1.91 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.10 1.39 6.01 -51.93 -0.31 1.08 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.74 8.12 -51.93 -0.42 0.31 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.41 6.81 7.32 -40.82 -0.30 6.51 16 39 H 0.07 1.17 6.17 -51.93 -0.32 0.85 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.36 7.75 5.66 -40.82 -0.23 7.52 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 47 H 0.05 0.67 6.32 -51.93 -0.33 0.34 16 48 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 1.12 7.60 -51.93 -0.39 0.72 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -29.40 400.43 -9.22 -38.62 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -8.10 Total: 12.51 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.29 Total: -3.09 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.18 Total: -60.69 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.71 Total: 16.25 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -2.40 Total: -0.02 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -29.40 -9.22 -38.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.924 kcal (2) G-P(sol) polarization free energy of solvation -29.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds