Wall clock time and date at job start Sat Apr 11 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30945 * 122.90799 * 2 1 4 4 C 1.29423 * 117.36393 * 179.97438 * 3 2 1 5 5 C 1.50708 * 124.79981 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47141 * 60.02437 * 5 4 3 7 7 C 1.52992 * 109.47025 * 300.02044 * 5 4 3 8 8 S 1.70949 * 110.39328 * 0.26003 * 4 3 2 9 9 C 1.35663 * 122.90274 * 179.97438 * 2 1 3 10 10 C 1.46683 * 126.13146 * 0.04236 * 9 2 1 11 11 O 1.21688 * 119.99624 * 359.97438 * 10 9 2 12 12 N 1.34778 * 120.00139 * 179.97438 * 10 9 2 13 13 C 1.46493 * 120.00025 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47152 * 180.02562 * 13 12 10 15 15 H 1.09008 * 109.47421 * 294.99820 * 14 13 12 16 16 N 1.46499 * 109.47227 * 55.00244 * 14 13 12 17 17 C 1.36942 * 119.99996 * 204.99807 * 16 14 13 18 18 H 1.07996 * 120.00009 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99775 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99763 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00171 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47209 * 89.99882 * 21 19 17 23 23 H 1.48502 * 109.47172 * 210.00441 * 21 19 17 24 24 H 1.48510 * 109.47042 * 329.99976 * 21 19 17 25 25 C 1.53000 * 109.47389 * 175.00587 * 14 13 12 26 26 C 1.52995 * 109.47389 * 179.97438 * 25 14 13 27 27 C 1.53002 * 109.47075 * 299.99724 * 25 14 13 28 28 H 1.09000 * 109.46881 * 90.02474 * 1 2 3 29 29 H 1.09000 * 109.47483 * 210.02664 * 1 2 3 30 30 H 1.09005 * 109.46997 * 330.03115 * 1 2 3 31 31 H 1.09002 * 109.46828 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47153 * 299.99670 * 6 5 4 33 33 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47261 * 59.99842 * 6 5 4 35 35 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 36 36 H 1.08996 * 109.47747 * 300.00019 * 7 5 4 37 37 H 1.09002 * 109.47103 * 60.00431 * 7 5 4 38 38 H 0.97000 * 119.99782 * 0.02562 * 12 10 9 39 39 H 1.08997 * 109.47687 * 300.00737 * 13 12 10 40 40 H 1.09003 * 109.47367 * 60.00536 * 13 12 10 41 41 H 0.96999 * 120.00242 * 25.00344 * 16 14 13 42 42 H 0.97003 * 119.99609 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.47575 * 59.99317 * 25 14 13 44 44 H 1.09000 * 109.47611 * 179.97438 * 26 25 14 45 45 H 1.08999 * 109.47575 * 299.99473 * 26 25 14 46 46 H 1.09003 * 109.47437 * 59.99908 * 26 25 14 47 47 H 1.09001 * 109.46641 * 59.99849 * 27 25 14 48 48 H 1.09000 * 109.47378 * 179.97438 * 27 25 14 49 49 H 1.09001 * 109.47262 * 300.00491 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5065 0.9743 0.0005 5 6 4.4822 2.1230 0.0000 6 6 4.2626 2.9791 1.2489 7 6 4.2627 2.9780 -1.2495 8 16 3.9446 -0.6781 -0.0062 9 6 2.2439 -1.1390 0.0005 10 6 1.7190 -2.5087 0.0002 11 8 0.5173 -2.6997 0.0000 12 7 2.5678 -3.5557 0.0003 13 6 2.0436 -4.9236 0.0006 14 6 3.2081 -5.9160 0.0012 15 1 3.7666 -5.8215 -0.9301 16 7 4.0933 -5.6294 1.1328 17 6 5.4115 -5.9970 1.0812 18 1 5.7985 -6.4977 0.2061 19 6 6.2501 -5.7259 2.1537 20 7 7.5171 -6.0787 2.1038 21 14 5.5804 -4.8605 3.6676 22 1 5.0800 -5.8705 4.6344 23 1 6.6611 -4.0624 4.3002 24 1 4.4674 -3.9605 3.2716 25 6 2.6642 -7.3405 0.1271 26 6 3.8286 -8.3329 0.1271 27 6 1.8802 -7.4734 1.4343 28 1 -0.3633 -0.0004 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8903 0.5134 31 1 5.5007 1.7345 0.0002 32 1 3.2442 3.3675 1.2487 33 1 4.9686 3.8096 1.2488 34 1 4.4190 2.3699 2.1392 35 1 4.9686 3.8085 -1.2501 36 1 4.4191 2.3681 -2.1393 37 1 3.2442 3.3664 -1.2497 38 1 3.5258 -3.4033 0.0009 39 1 1.4338 -5.0789 0.8906 40 1 1.4337 -5.0792 -0.8893 41 1 3.7457 -5.1795 1.9187 42 1 8.1032 -5.8889 2.8531 43 1 2.0055 -7.5537 -0.7147 44 1 3.4412 -9.3477 0.2173 45 1 4.3868 -8.2383 -0.8043 46 1 4.4876 -8.1199 0.9689 47 1 1.0506 -6.7664 1.4338 48 1 1.4923 -8.4881 1.5238 49 1 2.5388 -7.2601 2.2763 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496641441.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:01 Heat of formation + Delta-G solvation = -20.634927 kcal Electronic energy + Delta-G solvation = -27884.844321 eV Core-core repulsion = 24165.625703 eV Total energy + Delta-G solvation = -3719.218618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55244 -40.46881 -38.93820 -36.57590 -35.45233 -34.77035 -32.56575 -32.25284 -30.53227 -28.74756 -28.08472 -27.81316 -26.31621 -25.41138 -23.94021 -22.53919 -21.98238 -20.79315 -20.32234 -19.42858 -18.95050 -17.82678 -17.06608 -17.00588 -16.54386 -16.28251 -16.04154 -15.68981 -15.55077 -15.08024 -14.94844 -14.68563 -14.62538 -14.52438 -14.31840 -14.15377 -13.63836 -13.46080 -13.35619 -13.01023 -12.96414 -12.91518 -12.77457 -12.65750 -12.50184 -12.40693 -12.15884 -12.13648 -12.07151 -11.99525 -11.81355 -11.41558 -11.27689 -11.18766 -10.91370 -10.74493 -10.64678 -10.17462 -9.80913 -9.27394 -7.95117 -5.26179 -0.87322 0.07719 0.48665 1.29764 1.36530 1.39028 1.44504 1.99902 2.06236 2.50362 2.85593 3.37041 3.56195 3.64417 3.70876 3.83398 3.95774 4.03018 4.08138 4.22634 4.27131 4.38069 4.38540 4.63085 4.65097 4.68155 4.69234 4.79307 4.79698 4.89614 4.91219 4.93455 4.94363 5.05547 5.07605 5.17320 5.22571 5.25156 5.28627 5.30551 5.37587 5.44760 5.57197 5.80698 5.88753 6.27319 6.31146 6.51622 6.97837 7.13331 7.87846 8.06265 9.26034 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.003775 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.079110 B = 7415.927969 C = 9010.258211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.145 3.855 3 N -0.487 5.487 4 C 0.078 3.922 5 C -0.025 4.025 6 C -0.137 4.137 7 C -0.135 4.135 8 S 0.170 5.830 9 C -0.329 4.329 10 C 0.594 3.406 11 O -0.553 6.553 12 N -0.713 5.713 13 C 0.116 3.884 14 C 0.172 3.828 15 H 0.059 0.941 16 N -0.743 5.743 17 C -0.200 4.200 18 H 0.071 0.929 19 C -0.052 4.052 20 N -0.980 5.980 21 Si 0.929 3.071 22 H -0.289 1.289 23 H -0.301 1.301 24 H -0.259 1.259 25 C -0.102 4.102 26 C -0.136 4.136 27 C -0.140 4.140 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.361 0.639 42 H 0.253 0.747 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.038 0.962 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 15.236 -6.187 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.006 3.994 3 N -0.201 5.201 4 C -0.197 4.197 5 C -0.047 4.047 6 C -0.196 4.196 7 C -0.194 4.194 8 S 0.431 5.569 9 C -0.453 4.453 10 C 0.380 3.620 11 O -0.434 6.434 12 N -0.363 5.363 13 C -0.007 4.007 14 C 0.064 3.936 15 H 0.077 0.923 16 N -0.386 5.386 17 C -0.331 4.331 18 H 0.089 0.911 19 C -0.244 4.244 20 N -0.631 5.631 21 Si 0.760 3.240 22 H -0.216 1.216 23 H -0.228 1.228 24 H -0.184 1.184 25 C -0.123 4.123 26 C -0.193 4.193 27 C -0.197 4.197 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.241 0.759 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.194 0.806 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.167 14.932 -6.291 19.129 hybrid contribution -0.210 0.105 1.290 1.311 sum -10.377 15.036 -5.001 18.942 Atomic orbital electron populations 1.20620 0.85171 1.04321 1.04061 1.20963 0.99373 0.84948 0.94067 1.66063 1.04759 1.30746 1.18560 1.28103 0.94631 0.98712 0.98234 1.20218 0.95039 0.90346 0.99123 1.21805 1.03256 0.99676 0.94831 1.21790 1.03214 0.99640 0.94710 1.84338 1.04284 1.02663 1.65646 1.25433 0.97297 0.98829 1.23747 1.16821 0.85892 0.82987 0.76256 1.90728 1.14861 1.85544 1.52310 1.45967 1.10220 1.06262 1.73882 1.21830 0.96515 0.79324 1.03062 1.20691 0.89420 0.92543 0.90967 0.92346 1.42780 1.06900 1.71170 1.17728 1.18942 0.84618 1.28577 1.01002 0.91140 1.25159 0.95633 1.03039 1.00539 1.69833 1.05470 1.55064 1.32754 0.85798 0.77492 0.79031 0.81728 1.21581 1.22838 1.18397 1.21538 0.96797 0.95402 0.98547 1.21739 0.98232 0.97834 1.01504 1.21779 0.99145 1.01529 0.97281 0.89387 0.89549 0.89500 0.87397 0.92266 0.88967 0.93177 0.89032 0.92699 0.92326 0.75935 0.91072 0.89355 0.80559 0.93735 0.89673 0.92943 0.94262 0.93205 0.92129 0.92183 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.00 9.69 71.23 0.69 -1.31 16 2 C 0.15 4.06 6.79 42.09 0.29 4.34 16 3 N -0.49 -12.60 10.48 -178.29 -1.87 -14.47 16 4 C 0.08 1.80 5.90 88.47 0.52 2.33 16 5 C -0.03 -0.40 3.35 -11.54 -0.04 -0.44 16 6 C -0.14 -1.98 9.17 71.98 0.66 -1.32 16 7 C -0.13 -1.80 9.17 71.98 0.66 -1.14 16 8 S 0.17 4.41 22.29 -56.49 -1.26 3.15 16 9 C -0.33 -9.80 6.48 23.88 0.15 -9.65 16 10 C 0.59 19.30 7.78 86.45 0.67 19.97 16 11 O -0.55 -19.50 14.27 -4.31 -0.06 -19.56 16 12 N -0.71 -22.50 5.38 -467.10 -2.51 -25.02 16 13 C 0.12 3.45 5.02 86.38 0.43 3.88 16 14 C 0.17 5.68 2.35 44.99 0.11 5.78 16 15 H 0.06 2.01 8.08 -2.38 -0.02 1.99 16 16 N -0.74 -30.42 3.48 -322.94 -1.12 -31.54 16 17 C -0.20 -10.11 8.05 84.03 0.68 -9.44 16 18 H 0.07 3.90 7.63 -2.91 -0.02 3.87 16 19 C -0.05 -2.86 5.50 84.86 0.47 -2.40 16 20 N -0.98 -59.47 13.97 21.65 0.30 -59.16 16 21 Si 0.93 43.88 27.74 68.60 1.90 45.78 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 24 H -0.26 -11.22 6.52 99.48 0.65 -10.57 16 25 C -0.10 -3.03 2.80 -10.79 -0.03 -3.06 16 26 C -0.14 -4.65 8.26 71.98 0.59 -4.05 16 27 C -0.14 -4.03 8.69 71.98 0.63 -3.41 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.09 2.35 6.01 -2.39 -0.01 2.34 16 30 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.11 1.44 8.12 -2.39 -0.02 1.42 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.40 13.22 7.32 -92.71 -0.68 12.54 16 39 H 0.07 2.15 6.17 -2.39 -0.01 2.14 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.36 15.08 5.66 -92.71 -0.52 14.56 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.05 2.11 6.01 -2.39 -0.01 2.10 16 47 H 0.06 1.57 6.32 -2.39 -0.02 1.55 16 48 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 49 H 0.04 1.26 7.60 -2.39 -0.02 1.24 16 Total: -1.00 -64.38 400.43 1.56 -62.83 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.30 Total: 37.89 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.48 Total: 0.10 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -5.20 Total: -130.19 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.06 Total: -19.56 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.90 Total: 45.78 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.26 Total: 3.15 kcal Total: -64.38 1.56 -62.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496641441.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.193 kcal (2) G-P(sol) polarization free energy of solvation -64.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds