Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99681 * 2 1 4 4 C 1.52998 * 109.47060 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47515 * 66.66601 * 4 3 2 6 6 C 1.46894 * 111.00233 * 158.56387 * 5 4 3 7 7 C 1.50703 * 109.47309 * 297.59317 * 6 5 4 8 8 H 1.08002 * 119.99776 * 4.74180 * 7 6 5 9 9 C 1.37874 * 120.00078 * 184.75271 * 7 6 5 10 10 N 1.31513 * 120.00293 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99988 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47408 * 89.99335 * 11 9 7 13 13 H 1.48497 * 109.47146 * 209.99393 * 11 9 7 14 14 H 1.48504 * 109.46897 * 329.99337 * 11 9 7 15 15 C 1.46900 * 110.99822 * 282.51894 * 5 4 3 16 16 C 1.52998 * 109.47043 * 174.42252 * 15 5 4 17 17 C 1.50705 * 109.47187 * 180.02562 * 16 15 5 18 18 O 1.21293 * 119.99837 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99876 * 180.02562 * 17 16 15 20 20 C 1.40040 * 119.99548 * 175.14822 * 19 17 16 21 21 C 1.38722 * 120.04419 * 33.97054 * 20 19 17 22 22 C 1.38760 * 119.88104 * 179.79208 * 21 20 19 23 23 N 1.39825 * 120.01868 * 180.20354 * 22 21 20 24 24 C 1.38925 * 119.96629 * 0.48365 * 22 21 20 25 25 C 1.38186 * 120.07745 * 359.74408 * 24 22 21 26 26 C 1.38322 * 120.11752 * 0.02562 * 25 24 22 27 27 F 1.35096 * 119.97802 * 179.97438 * 26 25 24 28 28 H 1.08998 * 109.46710 * 60.00989 * 1 2 3 29 29 H 1.09007 * 109.46607 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47561 * 300.00715 * 1 2 3 31 31 H 1.08996 * 109.47431 * 59.99518 * 3 2 1 32 32 H 1.09007 * 109.46871 * 299.99451 * 3 2 1 33 33 H 1.09008 * 109.47113 * 306.66569 * 4 3 2 34 34 H 1.09002 * 109.47210 * 186.67146 * 4 3 2 35 35 H 1.09008 * 109.46987 * 57.58827 * 6 5 4 36 36 H 1.08997 * 109.47439 * 177.58816 * 6 5 4 37 37 H 0.96998 * 120.00292 * 180.02562 * 10 9 7 38 38 H 1.08998 * 109.47216 * 54.42163 * 15 5 4 39 39 H 1.08998 * 109.47248 * 294.42248 * 15 5 4 40 40 H 1.08998 * 109.47188 * 59.99894 * 16 15 5 41 41 H 1.08998 * 109.47095 * 300.00089 * 16 15 5 42 42 H 0.97001 * 119.99787 * 355.13979 * 19 17 16 43 43 H 1.08009 * 120.05578 * 359.97438 * 21 20 19 44 44 H 0.96994 * 119.99980 * 180.27693 * 23 22 21 45 45 H 0.96995 * 119.99552 * 0.27576 * 23 22 21 46 46 H 1.07996 * 119.96429 * 179.72917 * 24 22 21 47 47 H 1.08001 * 119.93923 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9809 0.5990 -1.2708 6 6 5.3898 0.9209 -1.5337 7 6 5.5480 2.4139 -1.6643 8 1 4.7041 3.0640 -1.4866 9 6 6.7702 2.9499 -2.0108 10 7 7.7979 2.1584 -2.2269 11 14 6.9661 4.8006 -2.1733 12 1 7.3658 5.3730 -0.8627 13 1 8.0118 5.1007 -3.1841 14 1 5.6766 5.3991 -2.6024 15 6 3.7608 -0.8534 -1.2870 16 6 4.1054 -1.4059 -2.6714 17 6 3.8791 -2.8958 -2.6883 18 8 3.4817 -3.4601 -1.6909 19 7 4.1192 -3.6012 -3.8113 20 6 4.0070 -4.9970 -3.7988 21 6 3.0532 -5.6099 -2.9994 22 6 2.9420 -6.9931 -2.9928 23 7 1.9789 -7.6136 -2.1914 24 6 3.7920 -7.7613 -3.7786 25 6 4.7447 -7.1494 -4.5707 26 6 4.8553 -5.7706 -4.5834 27 9 5.7880 -5.1754 -5.3586 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6885 1.8464 0.8899 32 1 1.6886 1.8463 -0.8901 33 1 3.8489 0.5444 0.8253 34 1 3.9781 2.1736 0.1200 35 1 6.0048 0.5611 -0.7088 36 1 5.7058 0.4397 -2.4593 37 1 8.6578 2.5355 -2.4704 38 1 2.7157 -1.0650 -1.0611 39 1 4.3971 -1.3256 -0.5386 40 1 5.1506 -1.1943 -2.8973 41 1 3.4692 -0.9336 -3.4199 42 1 4.3697 -3.1420 -4.6282 43 1 2.3964 -5.0114 -2.3854 44 1 1.9041 -8.5807 -2.1839 45 1 1.3856 -7.0770 -1.6428 46 1 3.7084 -8.8380 -3.7701 47 1 5.4041 -7.7487 -5.1810 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103427872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -91.534072 kcal Electronic energy + Delta-G solvation = -29449.875110 eV Core-core repulsion = 25161.368899 eV Total energy + Delta-G solvation = -4288.506211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.72745 -40.42383 -38.77431 -37.91716 -36.21703 -35.28972 -33.73555 -32.63877 -31.52647 -29.91209 -28.85434 -28.17943 -26.54089 -25.88208 -23.87105 -22.83006 -22.39525 -21.79928 -20.38937 -19.53129 -18.16802 -17.48837 -17.31635 -16.82128 -16.37247 -16.15255 -15.75935 -15.66651 -15.56790 -15.20337 -15.03725 -14.67790 -14.57924 -14.14851 -13.85408 -13.46556 -13.42457 -13.12875 -12.98373 -12.88494 -12.73095 -12.42222 -12.12695 -11.64311 -11.54020 -11.41550 -11.33024 -10.96298 -10.86422 -10.79730 -10.70224 -10.57884 -10.22542 -10.05047 -9.72225 -9.57402 -9.15858 -9.14455 -8.45873 -8.41948 -7.58104 -7.20204 -6.04440 -4.05830 1.10850 1.27130 2.72329 3.00660 3.30102 3.36988 3.40215 3.61344 3.66779 4.16585 4.31156 4.40877 4.63908 4.78207 4.97396 5.15640 5.24805 5.32472 5.39309 5.40869 5.49702 5.57334 5.64454 5.68217 5.74556 5.79921 5.86734 6.00365 6.02764 6.07290 6.15238 6.19769 6.28310 6.35221 6.60333 6.61994 6.77928 6.86490 7.24566 7.30021 7.36579 7.38605 7.51617 7.53789 7.78488 8.07777 8.20715 8.24557 8.56725 9.01359 9.58369 11.06375 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010757 B = 0.002915 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2602.412796 B = 9603.134308 C =11908.337690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.066 3.934 4 C 0.063 3.937 5 N -0.535 5.535 6 C 0.186 3.814 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.069 3.931 16 C -0.137 4.137 17 C 0.522 3.478 18 O -0.518 6.518 19 N -0.677 5.677 20 C 0.172 3.828 21 C -0.178 4.178 22 C 0.224 3.776 23 N -0.874 5.874 24 C -0.193 4.193 25 C -0.086 4.086 26 C 0.007 3.993 27 F -0.143 7.143 28 H 0.037 0.963 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.102 0.898 35 H -0.014 1.014 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.096 0.904 39 H 0.025 0.975 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.416 0.584 43 H 0.150 0.850 44 H 0.398 0.602 45 H 0.401 0.599 46 H 0.128 0.872 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.874 -16.967 -2.414 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.011 4.011 4 C -0.065 4.065 5 N -0.260 5.260 6 C 0.061 3.939 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.060 4.060 16 C -0.177 4.177 17 C 0.311 3.689 18 O -0.393 6.393 19 N -0.322 5.322 20 C 0.075 3.925 21 C -0.203 4.203 22 C 0.118 3.882 23 N -0.413 5.413 24 C -0.217 4.217 25 C -0.106 4.106 26 C -0.016 4.016 27 F -0.122 7.122 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.120 0.880 35 H 0.004 0.996 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.043 0.957 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.252 0.748 43 H 0.168 0.832 44 H 0.226 0.774 45 H 0.229 0.771 46 H 0.146 0.854 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.053 -17.175 -2.135 21.678 hybrid contribution 0.708 1.006 0.110 1.235 sum -12.345 -16.169 -2.025 20.444 Atomic orbital electron populations 1.22651 0.82605 1.01916 0.99362 1.87954 1.18434 1.28740 1.95129 1.22768 0.94838 0.84042 0.99433 1.22066 0.91678 1.01639 0.91140 1.62082 1.24208 1.08543 1.31131 1.19828 0.81379 0.96724 0.96003 1.21169 0.95477 0.91583 1.46627 0.91893 1.24979 0.95915 0.98103 0.95482 1.69949 1.01210 1.34750 1.47649 0.86539 0.77858 0.85481 0.77774 1.20781 1.21272 1.19807 1.21963 1.02575 0.88777 0.92641 1.21769 1.05247 0.88463 1.02207 1.21280 0.75483 0.90537 0.81619 1.90654 1.43462 1.71791 1.33380 1.43650 1.69762 1.04224 1.14562 1.17490 0.94206 0.83372 0.97405 1.20627 1.01719 0.92770 1.05158 1.17617 0.89055 0.91322 0.90197 1.42448 1.39122 1.09378 1.50367 1.20346 0.99571 0.99462 1.02320 1.20657 0.98757 0.91896 0.99307 1.17241 0.92939 0.90907 1.00544 1.91459 1.63357 1.84079 1.73273 0.94445 0.90408 0.94816 0.94068 0.92585 0.95244 0.87997 0.99571 0.94406 0.92893 0.88588 0.95712 0.87728 0.88003 0.74766 0.83236 0.77382 0.77085 0.85447 0.84608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.26 7.89 -35.23 -0.28 -6.54 16 3 C 0.07 1.07 6.26 37.16 0.23 1.30 16 4 C 0.06 1.23 5.35 -3.82 -0.02 1.21 16 5 N -0.53 -11.39 4.48 -236.07 -1.06 -12.45 16 6 C 0.19 4.69 4.53 -4.98 -0.02 4.67 16 7 C -0.51 -13.79 8.30 -34.44 -0.29 -14.08 16 8 H 0.06 1.66 6.89 -52.49 -0.36 1.30 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 11 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C 0.07 1.34 4.01 -3.82 -0.02 1.32 16 16 C -0.14 -2.30 5.53 -27.88 -0.15 -2.45 16 17 C 0.52 8.38 7.68 -10.98 -0.08 8.30 16 18 O -0.52 -9.53 13.34 5.55 0.07 -9.46 16 19 N -0.68 -9.27 5.23 -9.82 -0.05 -9.32 16 20 C 0.17 2.36 6.33 -83.62 -0.53 1.84 16 21 C -0.18 -2.32 8.55 -39.21 -0.34 -2.66 16 22 C 0.22 2.36 6.75 -83.76 -0.57 1.79 16 23 N -0.87 -6.48 9.10 32.42 0.29 -6.19 16 24 C -0.19 -1.83 9.89 -39.35 -0.39 -2.22 16 25 C -0.09 -0.90 10.01 -39.57 -0.40 -1.30 16 26 C 0.01 0.09 7.31 -39.25 -0.29 -0.20 16 27 F -0.14 -1.94 16.94 2.25 0.04 -1.90 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 33 H 0.03 0.58 7.97 -51.92 -0.41 0.17 16 34 H 0.10 2.09 6.20 -51.93 -0.32 1.77 16 35 H -0.01 -0.37 8.14 -51.92 -0.42 -0.80 16 36 H 0.04 1.00 6.04 -51.93 -0.31 0.68 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.10 1.85 5.27 -51.93 -0.27 1.58 16 39 H 0.02 0.52 8.10 -51.93 -0.42 0.10 16 40 H 0.10 1.88 6.30 -51.93 -0.33 1.55 16 41 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 42 H 0.42 4.80 8.65 -40.82 -0.35 4.45 16 43 H 0.15 2.13 6.13 -52.48 -0.32 1.81 16 44 H 0.40 1.97 8.84 -40.82 -0.36 1.60 16 45 H 0.40 2.70 8.84 -40.82 -0.36 2.34 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -32.48 388.73 -8.01 -40.50 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.77 Total: 8.25 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.84 Total: 0.49 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.08 Total: -53.32 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.20 Total: -15.99 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.48 -8.01 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103427872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.038 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds