Wall clock time and date at job start Sat Apr 11 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.36001 * 116.99613 * 2 1 4 4 C 1.38667 * 120.04389 * 359.97438 * 3 2 1 5 5 C 1.38229 * 120.08772 * 179.97438 * 4 3 2 6 6 C 1.50701 * 119.90997 * 180.02562 * 5 4 3 7 7 H 1.09003 * 109.47043 * 20.00539 * 6 5 4 8 8 C 1.52995 * 109.47458 * 260.00393 * 6 5 4 9 9 N 1.46906 * 109.46893 * 140.00543 * 6 5 4 10 10 C 1.46901 * 110.99793 * 205.00308 * 9 6 5 11 11 C 1.53000 * 109.46769 * 180.02562 * 10 9 6 12 12 O 1.42899 * 109.47405 * 64.99669 * 11 10 9 13 13 C 1.42901 * 113.99649 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.46545 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00589 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99844 * 180.02562 * 14 13 12 17 17 N 1.31502 * 119.99832 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99825 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47295 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46716 * 120.00059 * 18 16 14 21 21 H 1.48496 * 109.47278 * 239.99882 * 18 16 14 22 22 C 1.38227 * 120.18011 * 0.30304 * 5 4 3 23 23 C 1.38669 * 120.08703 * 359.44516 * 22 5 4 24 24 O 1.36002 * 120.04701 * 180.25316 * 23 22 5 25 25 C 1.42896 * 116.99674 * 0.27642 * 24 23 22 26 26 C 1.38975 * 120.04376 * 180.02562 * 3 2 1 27 27 O 1.36094 * 120.08835 * 359.94761 * 26 3 2 28 28 C 1.42900 * 116.99808 * 90.00453 * 27 26 3 29 29 H 1.08999 * 109.47042 * 299.99566 * 1 2 3 30 30 H 1.09001 * 109.47028 * 60.00444 * 1 2 3 31 31 H 1.09003 * 109.46168 * 180.02562 * 1 2 3 32 32 H 1.08007 * 119.95754 * 0.02591 * 4 3 2 33 33 H 1.09003 * 109.47112 * 300.00104 * 8 6 5 34 34 H 1.09001 * 109.47056 * 60.00167 * 8 6 5 35 35 H 1.09000 * 109.47395 * 179.97438 * 8 6 5 36 36 H 1.00899 * 110.99995 * 81.04706 * 9 6 5 37 37 H 1.09002 * 109.47401 * 59.99808 * 10 9 6 38 38 H 1.09001 * 109.46874 * 299.99821 * 10 9 6 39 39 H 1.09002 * 109.46642 * 184.99944 * 11 10 9 40 40 H 1.09002 * 109.47069 * 304.99474 * 11 10 9 41 41 H 1.08990 * 109.47463 * 299.99806 * 13 12 11 42 42 H 1.08992 * 109.47069 * 60.00902 * 13 12 11 43 43 H 0.97004 * 120.00403 * 179.97438 * 17 16 14 44 44 H 1.07995 * 119.95685 * 179.72195 * 22 5 4 45 45 H 1.08996 * 109.47522 * 59.99881 * 25 24 23 46 46 H 1.09000 * 109.47025 * 179.97438 * 25 24 23 47 47 H 1.09003 * 109.47160 * 299.99299 * 25 24 23 48 48 H 1.09003 * 109.47256 * 300.00241 * 28 27 26 49 49 H 1.09010 * 109.46878 * 59.99843 * 28 27 26 50 50 H 1.08995 * 109.47375 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2920 2.3753 -0.0005 5 6 1.9185 3.6075 0.0000 6 6 1.0947 4.8694 0.0000 7 1 0.0874 4.6456 0.3511 8 6 1.0261 5.4337 -1.4204 9 7 1.7153 5.8592 0.8907 10 6 0.7192 6.8180 1.3873 11 6 1.4017 7.8309 2.3088 12 8 2.3327 8.6095 1.5545 13 6 3.0277 9.5917 2.3253 14 6 3.9781 10.3492 1.4341 15 1 4.0443 10.1052 0.3841 16 6 4.7631 11.3537 1.9592 17 7 4.6829 11.6505 3.2378 18 14 5.9406 12.2931 0.8544 19 1 5.8412 11.7711 -0.5323 20 1 5.5865 13.7353 0.8665 21 1 7.3295 12.1202 1.3506 22 6 3.2986 3.6853 -0.0053 23 6 4.0603 2.5265 0.0005 24 8 5.4181 2.6041 0.0006 25 6 5.9931 3.9123 0.0006 26 6 3.4342 1.2857 -0.0005 27 8 4.1782 0.1461 0.0000 28 6 4.5324 -0.3980 -1.2730 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 0.2134 2.3187 -0.0005 33 1 2.0335 5.6574 -1.7716 34 1 0.5657 4.6993 -2.0813 35 1 0.4299 6.3462 -1.4205 36 1 2.4759 6.3347 0.4287 37 1 -0.0534 6.2850 1.9415 38 1 0.2668 7.3410 0.5448 39 1 0.6499 8.4874 2.7471 40 1 1.9294 7.3020 3.1026 41 1 2.3096 10.2847 2.7634 42 1 3.5892 9.0998 3.1194 43 1 5.2354 12.3569 3.6074 44 1 3.7843 4.6498 -0.0094 45 1 5.6689 4.4517 0.8905 46 1 7.0801 3.8313 0.0011 47 1 5.6690 4.4516 -0.8895 48 1 3.6269 -0.6395 -1.8296 49 1 5.1174 0.3335 -1.8307 50 1 5.1235 -1.3025 -1.1298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293779949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:13 Heat of formation + Delta-G solvation = -133.099541 kcal Electronic energy + Delta-G solvation = -30007.684988 eV Core-core repulsion = 25808.543916 eV Total energy + Delta-G solvation = -4199.141071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.94355 -39.10587 -38.24526 -37.72758 -36.79860 -35.25177 -32.82532 -31.63147 -29.77373 -29.52305 -28.01164 -27.76154 -27.22123 -26.55720 -26.30581 -23.38542 -22.44349 -22.17400 -21.38222 -20.84745 -18.56662 -17.36531 -17.27183 -16.65556 -16.47164 -16.34143 -15.78969 -15.63141 -15.42534 -15.31368 -15.07714 -14.82976 -14.63893 -14.52165 -14.17843 -14.04190 -13.53254 -13.31796 -13.06606 -12.92090 -12.48562 -12.32985 -12.18835 -12.10300 -11.88582 -11.71021 -11.70291 -11.62977 -11.34504 -11.29480 -10.97689 -10.82658 -10.80294 -10.62254 -10.49900 -10.04960 -10.02681 -9.13489 -8.87186 -8.36698 -8.25778 -8.21530 -8.19406 -6.14672 -4.16668 1.07133 1.28732 2.69537 3.25498 3.32275 3.33438 3.37605 3.51913 3.82557 4.19584 4.30973 4.58172 4.77761 4.85730 4.88166 4.89171 4.92293 5.04417 5.10445 5.13628 5.20766 5.21925 5.22567 5.25189 5.27573 5.30525 5.37397 5.44621 5.51097 5.55048 5.59399 5.59878 5.73025 5.92370 6.02990 6.05815 6.07885 6.15643 6.29633 6.31023 6.45615 6.91598 7.07732 7.12156 7.16470 7.40217 7.54088 7.62089 7.74867 8.11325 8.53194 8.96461 9.48336 10.96833 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013611 B = 0.002528 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.726089 B =11071.996154 C =12472.795523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.146 3.854 4 C -0.232 4.232 5 C 0.013 3.987 6 C 0.119 3.881 7 H 0.086 0.914 8 C -0.177 4.177 9 N -0.678 5.678 10 C 0.067 3.933 11 C 0.061 3.939 12 O -0.399 6.399 13 C 0.197 3.803 14 C -0.514 4.514 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.906 3.094 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.208 4.208 23 C 0.151 3.849 24 O -0.306 6.306 25 C 0.023 3.977 26 C 0.018 3.982 27 O -0.313 6.313 28 C 0.036 3.964 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.356 0.644 37 H 0.076 0.924 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.004 0.996 42 H 0.006 0.994 43 H 0.264 0.736 44 H 0.139 0.861 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.043 0.957 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -22.540 -9.316 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.100 3.900 4 C -0.251 4.251 5 C 0.012 3.988 6 C 0.009 3.991 7 H 0.104 0.896 8 C -0.236 4.236 9 N -0.311 5.311 10 C -0.062 4.062 11 C -0.017 4.017 12 O -0.320 6.320 13 C 0.123 3.877 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.227 4.227 23 C 0.104 3.896 24 O -0.218 6.218 25 C -0.072 4.072 26 C -0.027 4.027 27 O -0.229 6.229 28 C -0.059 4.059 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.177 0.823 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.157 0.843 45 H 0.084 0.916 46 H 0.120 0.880 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.387 -23.269 -8.661 25.904 hybrid contribution 0.094 1.703 -1.067 2.012 sum -7.293 -21.566 -9.728 24.757 Atomic orbital electron populations 1.23098 0.78365 1.03905 1.01546 1.86136 1.21227 1.26087 1.88408 1.18850 0.90519 0.84746 0.95867 1.20832 0.99900 0.91002 1.13369 1.19378 0.93000 0.93616 0.92804 1.20469 0.96746 0.90029 0.91846 0.89570 1.22475 1.02921 1.01377 0.96848 1.60577 1.11877 1.17954 1.40672 1.21991 0.93967 0.92290 0.97994 1.22295 0.92748 0.92394 0.94214 1.87775 1.55594 1.51115 1.37468 1.20173 0.90618 0.85246 0.91665 1.21070 1.21112 1.16962 0.96110 0.91629 1.24953 0.97314 0.96951 0.95304 1.69966 1.40436 1.31237 1.11982 0.86307 0.80330 0.79433 0.80562 1.19534 1.20854 1.20805 1.20931 0.94042 0.97419 1.10309 1.18981 0.83160 0.92530 0.94919 1.86116 1.16518 1.31186 1.88018 1.23189 0.99167 0.82574 1.02298 1.16921 0.86349 0.84673 1.14751 1.86166 1.70143 1.38022 1.28573 1.22947 0.99312 0.98384 0.85254 0.92390 0.92618 0.88225 0.85059 0.91886 0.92113 0.91787 0.82331 0.90614 0.94534 0.94095 0.93504 0.97841 0.97621 0.92672 0.84322 0.91610 0.88016 0.92380 0.93997 0.93847 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.51 10.28 -34.33 -0.35 -3.87 16 3 C 0.15 1.85 6.70 -39.15 -0.26 1.59 16 4 C -0.23 -2.60 8.65 -39.43 -0.34 -2.94 16 5 C 0.01 0.16 4.95 -104.63 -0.52 -0.36 16 6 C 0.12 1.35 2.78 -68.86 -0.19 1.16 16 7 H 0.09 0.88 7.65 -51.93 -0.40 0.48 16 8 C -0.18 -1.84 9.14 37.16 0.34 -1.50 16 9 N -0.68 -9.43 5.71 -107.95 -0.62 -10.05 16 10 C 0.07 0.94 5.90 -3.82 -0.02 0.92 16 11 C 0.06 1.10 6.28 37.16 0.23 1.33 16 12 O -0.40 -9.15 9.85 -35.23 -0.35 -9.50 16 13 C 0.20 5.30 5.69 36.01 0.20 5.50 16 14 C -0.51 -14.78 9.43 -34.44 -0.32 -15.11 16 15 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -26.58 13.28 55.43 0.74 -25.84 16 18 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.21 -2.71 8.31 -39.43 -0.33 -3.04 16 23 C 0.15 2.10 6.70 -39.15 -0.26 1.84 16 24 O -0.31 -4.15 10.28 -34.33 -0.35 -4.51 16 25 C 0.02 0.24 9.81 101.05 0.99 1.23 16 26 C 0.02 0.26 5.75 -39.03 -0.22 0.04 16 27 O -0.31 -4.49 9.99 -45.30 -0.45 -4.95 16 28 C 0.04 0.38 11.13 101.05 1.13 1.50 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.13 1.14 6.27 -52.48 -0.33 0.81 16 33 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 36 H 0.36 5.46 7.37 -39.29 -0.29 5.17 16 37 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 38 H 0.04 0.51 7.44 -51.93 -0.39 0.12 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 42 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.14 1.78 5.48 -52.49 -0.29 1.49 16 45 H 0.07 0.73 7.67 -51.93 -0.40 0.34 16 46 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.06 0.56 7.65 -51.93 -0.40 0.17 16 48 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 50 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 412.78 15.07 6.22 6.22 Total: -1.00 -33.27 412.78 -7.15 -40.42 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.28 Total: 0.80 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 1.31 Total: -5.17 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.12 Total: -35.88 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -1.50 Total: -22.82 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.27 -7.15 -40.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293779949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.678 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds