Wall clock time and date at job start Sat Apr 11 2020 05:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32432 * 120.34905 * 2 1 4 4 C 1.32557 * 120.93009 * 179.97438 * 3 2 1 5 5 C 1.48314 * 119.18095 * 179.97438 * 4 3 2 6 6 C 1.39813 * 120.53698 * 0.02562 * 5 4 3 7 7 C 1.38408 * 118.30765 * 180.02562 * 6 5 4 8 8 C 1.38319 * 119.28321 * 0.25458 * 7 6 5 9 9 N 1.31894 * 121.03896 * 359.49369 * 8 7 6 10 10 C 1.31739 * 121.85486 * 0.49919 * 9 8 7 11 11 N 1.32588 * 121.63994 * 0.28440 * 4 3 2 12 12 C 1.32823 * 120.60646 * 359.43762 * 11 4 3 13 13 N 1.38547 * 120.49004 * 180.28170 * 12 11 4 14 14 C 1.46897 * 111.00187 * 66.99563 * 13 12 11 15 15 C 1.53238 * 109.33864 * 172.75175 * 14 13 12 16 16 N 1.47077 * 108.52430 * 53.83041 * 15 14 13 17 17 C 1.36936 * 120.88173 * 128.83747 * 16 15 14 18 18 H 1.07999 * 119.99599 * 212.84564 * 17 16 15 19 19 C 1.38814 * 120.00130 * 32.84578 * 17 16 15 20 20 N 1.31618 * 119.99726 * 11.68245 * 19 17 16 21 21 Si 1.86797 * 120.00150 * 191.67780 * 19 17 16 22 22 H 1.48506 * 109.46744 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47161 * 119.99779 * 21 19 17 24 24 H 1.48490 * 109.47317 * 240.00545 * 21 19 17 25 25 C 1.47078 * 118.23752 * 308.81587 * 16 15 14 26 26 C 1.46899 * 110.99483 * 302.69335 * 13 12 11 27 27 C 1.38169 * 120.35612 * 179.97438 * 2 1 3 28 28 C 1.50701 * 120.74832 * 0.04322 * 27 2 1 29 29 H 1.09005 * 109.47312 * 89.99994 * 1 2 3 30 30 H 1.09003 * 109.46660 * 209.99718 * 1 2 3 31 31 H 1.08994 * 109.47366 * 329.99613 * 1 2 3 32 32 H 1.08000 * 120.84512 * 0.04406 * 6 5 4 33 33 H 1.08000 * 120.36037 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.48143 * 179.74675 * 8 7 6 35 35 H 1.08002 * 119.70481 * 179.75443 * 10 9 8 36 36 H 1.09002 * 109.49420 * 292.71209 * 14 13 12 37 37 H 1.08999 * 109.49195 * 52.78511 * 14 13 12 38 38 H 1.09005 * 109.62838 * 294.11585 * 15 14 13 39 39 H 1.09004 * 109.62859 * 173.54062 * 15 14 13 40 40 H 0.97003 * 119.99408 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.62936 * 291.47857 * 25 16 15 42 42 H 1.08990 * 109.63210 * 170.89532 * 25 16 15 43 43 H 1.08998 * 109.49838 * 307.21284 * 26 13 12 44 44 H 1.09005 * 109.49193 * 67.29309 * 26 13 12 45 45 H 1.08997 * 109.47456 * 82.65942 * 28 27 2 46 46 H 1.09005 * 109.47159 * 202.65935 * 28 27 2 47 47 H 1.09002 * 109.47306 * 322.65159 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1761 1.1428 0.0000 4 6 3.5016 1.1563 0.0005 5 6 4.2116 2.4585 -0.0001 6 6 3.4943 3.6586 -0.0006 7 6 4.2037 4.8471 -0.0017 8 6 5.5863 4.8098 -0.0076 9 7 6.2357 3.6618 -0.0022 10 6 5.6041 2.5057 -0.0007 11 7 4.2085 0.0346 -0.0046 12 6 3.6020 -1.1471 0.0009 13 7 4.3432 -2.3176 0.0014 14 6 5.0821 -2.4723 1.2615 15 6 5.7407 -3.8555 1.2971 16 7 6.5477 -4.0203 0.0786 17 6 7.8564 -4.4170 0.1507 18 1 8.5710 -4.0547 -0.5735 19 6 8.2644 -5.2846 1.1545 20 7 7.3684 -5.9054 1.8921 21 14 10.0851 -5.5711 1.4585 22 1 10.8802 -4.7600 0.5017 23 1 10.4242 -5.1703 2.8476 24 1 10.3983 -7.0100 1.2679 25 6 5.9118 -3.7482 -1.2194 26 6 5.2464 -2.3692 -1.1559 27 6 2.2052 -1.1923 0.0005 28 6 1.4770 -2.5117 0.0001 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.4143 3.6583 0.0001 33 1 3.6832 5.7934 -0.0026 34 1 6.1430 5.7353 -0.0126 35 1 6.1707 1.5863 -0.0003 36 1 5.8502 -1.7019 1.3297 37 1 4.3938 -2.3753 2.1011 38 1 4.9711 -4.6266 1.3337 39 1 6.3825 -3.9330 2.1747 40 1 7.6536 -6.5114 2.5938 41 1 5.1586 -4.5089 -1.4247 42 1 6.6667 -3.7547 -2.0055 43 1 4.6773 -2.1976 -2.0695 44 1 6.0123 -1.6002 -1.0541 45 1 1.1871 -2.7664 -1.0192 46 1 2.1315 -3.2880 0.3965 47 1 0.5858 -2.4350 0.6230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301533901.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:19 Heat of formation + Delta-G solvation = 122.129022 kcal Electronic energy + Delta-G solvation = -29348.338030 eV Core-core repulsion = 25532.158921 eV Total energy + Delta-G solvation = -3816.179108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39899 -40.03500 -38.20465 -35.06309 -35.02895 -32.88412 -32.29966 -31.43345 -30.89401 -30.02395 -29.18548 -27.32538 -26.13549 -24.01604 -23.85712 -23.24494 -22.69264 -21.54886 -21.43998 -19.31911 -17.96073 -17.57488 -16.90801 -16.38534 -15.96666 -15.58709 -15.41075 -14.74828 -14.50530 -14.30855 -14.06004 -13.99334 -13.79685 -13.50855 -13.44952 -13.22274 -13.20103 -13.07993 -12.88697 -12.68117 -12.35861 -12.07792 -11.89162 -11.59114 -11.14761 -10.95908 -10.81483 -10.78167 -10.46288 -10.28494 -10.25761 -10.04550 -9.88127 -9.79530 -9.66697 -9.61371 -9.21340 -8.58222 -8.57308 -8.27668 -6.63435 -5.81880 -3.30119 0.25074 1.03610 1.08711 1.46135 3.36296 3.44342 3.45958 3.46644 3.53475 3.75908 3.93701 4.06440 4.35614 4.47488 4.68445 4.78242 4.78970 4.84183 4.92823 5.04415 5.15380 5.26023 5.31237 5.33067 5.38091 5.43509 5.60816 5.63588 5.71600 5.78980 5.81906 5.89156 5.95200 6.04490 6.09951 6.13806 6.19901 6.25792 6.40005 6.45331 6.48722 6.57110 6.83535 7.02373 7.09599 7.43689 7.52248 7.57294 7.78964 7.79065 8.07132 8.43667 9.18375 9.78903 10.40143 11.27219 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003399 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.050704 B = 8234.996619 C =10220.223258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.170 3.830 3 N -0.521 5.521 4 C 0.362 3.638 5 C -0.090 4.090 6 C -0.032 4.032 7 C -0.185 4.185 8 C 0.109 3.891 9 N -0.488 5.488 10 C 0.148 3.852 11 N -0.536 5.536 12 C 0.361 3.639 13 N -0.480 5.480 14 C 0.041 3.959 15 C 0.184 3.816 16 N -0.593 5.593 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.008 3.992 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.151 3.849 26 C 0.051 3.949 27 C -0.163 4.163 28 C -0.099 4.099 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.138 0.862 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.030 0.970 39 H 0.087 0.913 40 H 0.254 0.746 41 H 0.027 0.973 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.047 0.953 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.607 16.546 -3.701 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.025 3.975 3 N -0.236 5.236 4 C 0.094 3.906 5 C -0.094 4.094 6 C -0.060 4.060 7 C -0.205 4.205 8 C -0.048 4.048 9 N -0.196 5.196 10 C -0.011 4.011 11 N -0.254 5.254 12 C 0.123 3.877 13 N -0.204 5.204 14 C -0.086 4.086 15 C 0.058 3.942 16 N -0.316 5.316 17 C -0.385 4.385 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.024 3.976 26 C -0.078 4.078 27 C -0.169 4.169 28 C -0.157 4.157 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.186 0.814 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.485 16.828 -3.611 21.864 hybrid contribution 0.111 -0.291 0.298 0.431 sum -13.374 16.537 -3.313 21.524 Atomic orbital electron populations 1.20774 0.87753 1.04004 1.03548 1.21424 0.97326 0.87198 0.91591 1.68054 1.08851 1.30390 1.16264 1.20698 0.85946 0.91039 0.92892 1.19125 0.94258 0.90271 1.05764 1.21726 1.01344 0.90749 0.92150 1.22107 0.95683 0.98995 1.03689 1.22967 0.91966 0.96539 0.93367 1.67839 1.40763 0.98275 1.12738 1.23115 0.90675 0.96557 0.90712 1.68523 1.42338 0.98945 1.15565 1.20394 0.91030 0.87873 0.88404 1.60214 1.28223 1.26054 1.05891 1.23017 0.95453 1.02555 0.87583 1.20816 0.93355 0.88731 0.91338 1.44025 1.09437 1.78817 0.99314 1.19184 0.84203 1.21206 1.13907 0.91773 1.25200 0.97653 0.96040 1.00264 1.69987 1.31833 1.29752 1.23055 0.86209 0.85046 0.77602 0.77840 1.20163 1.21535 1.21600 1.20997 0.95089 0.91554 0.89966 1.22685 0.93833 1.01062 0.90175 1.21335 0.93953 0.97963 1.03649 1.20618 0.99519 0.93215 1.02305 0.89801 0.89735 0.90209 0.83634 0.84370 0.82548 0.81380 0.93868 0.92268 0.95147 0.89510 0.93595 0.95461 0.92085 0.92267 0.93419 0.90952 0.89205 0.91557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.83 36.00 0.35 -0.49 16 2 C 0.17 2.14 6.81 -82.36 -0.56 1.58 16 3 N -0.52 -7.30 9.46 -7.48 -0.07 -7.37 16 4 C 0.36 5.56 7.56 -156.98 -1.19 4.37 16 5 C -0.09 -1.24 5.89 -104.76 -0.62 -1.86 16 6 C -0.03 -0.36 9.68 -38.93 -0.38 -0.73 16 7 C -0.18 -1.67 10.10 -39.49 -0.40 -2.07 16 8 C 0.11 1.11 11.17 -17.50 -0.20 0.92 16 9 N -0.49 -6.62 10.35 -12.96 -0.13 -6.75 16 10 C 0.15 2.13 10.73 -17.19 -0.18 1.94 16 11 N -0.54 -9.07 8.99 -10.37 -0.09 -9.16 16 12 C 0.36 5.97 5.28 -154.87 -0.82 5.15 16 13 N -0.48 -8.61 3.57 -172.73 -0.62 -9.23 16 14 C 0.04 0.82 5.47 -3.70 -0.02 0.80 16 15 C 0.18 4.32 5.35 -3.60 -0.02 4.30 16 16 N -0.59 -14.74 3.01 -172.02 -0.52 -15.25 16 17 C -0.26 -6.95 9.59 -15.06 -0.14 -7.10 16 18 H 0.06 1.73 7.86 -52.49 -0.41 1.32 16 19 C 0.01 0.21 5.02 -17.43 -0.09 0.12 16 20 N -0.90 -25.79 11.30 55.49 0.63 -25.16 16 21 Si 0.90 21.59 29.57 -169.99 -5.03 16.57 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 26 C 0.05 0.93 5.36 -3.70 -0.02 0.91 16 27 C -0.16 -2.26 5.94 -104.08 -0.62 -2.88 16 28 C -0.10 -1.12 9.38 36.01 0.34 -0.78 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.56 6.18 -51.93 -0.32 0.24 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.15 1.43 7.60 -52.49 -0.40 1.03 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.17 2.57 7.52 -52.49 -0.39 2.18 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 2.27 6.44 -51.93 -0.33 1.93 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 1.24 7.95 -51.93 -0.41 0.82 16 43 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16 44 H 0.05 0.94 8.02 -51.93 -0.42 0.53 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.21 7.35 -51.93 -0.38 0.82 16 47 H 0.07 0.59 6.38 -51.93 -0.33 0.25 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -31.32 382.18 -11.41 -42.74 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.76 Total: 0.55 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -4.58 Total: 7.32 kcal Atomic # 7 Polarization: -72.12 SS G_CDS: -0.80 Total: -72.92 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.32 -11.41 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301533901.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.865 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds