Wall clock time and date at job start Sat Apr 11 2020 05:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36000 * 116.99714 * 2 1 4 4 C 1.38666 * 120.05022 * 0.25155 * 3 2 1 5 5 C 1.38220 * 120.08966 * 180.25442 * 4 3 2 6 6 C 1.38233 * 120.18254 * 359.74359 * 5 4 3 7 7 C 1.38673 * 120.08450 * 0.02562 * 6 5 4 8 8 O 1.35998 * 120.04101 * 180.02562 * 7 6 5 9 9 C 1.42894 * 117.00394 * 359.97438 * 8 7 6 10 10 C 1.38976 * 120.03930 * 179.97438 * 3 2 1 11 11 O 1.36103 * 120.09115 * 0.02562 * 10 3 2 12 12 C 1.42895 * 116.99918 * 269.72403 * 11 10 3 13 13 C 1.53006 * 109.46845 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46824 * 55.00418 * 13 12 11 15 15 O 1.42899 * 109.47421 * 295.00362 * 13 12 11 16 16 C 1.53000 * 109.46846 * 175.00002 * 13 12 11 17 17 N 1.46901 * 109.46769 * 185.00040 * 16 13 12 18 18 C 1.46901 * 110.99975 * 66.05138 * 17 16 13 19 19 C 1.46903 * 110.99790 * 190.00085 * 17 16 13 20 20 H 1.08998 * 109.47089 * 300.00145 * 19 17 16 21 21 C 1.53003 * 109.47236 * 60.00351 * 19 17 16 22 22 C 1.50700 * 109.46790 * 180.02562 * 19 17 16 23 23 H 1.07994 * 120.00692 * 359.97438 * 22 19 17 24 24 C 1.37884 * 119.99565 * 180.02562 * 22 19 17 25 25 N 1.31515 * 119.99672 * 180.02562 * 24 22 19 26 26 Si 1.86794 * 120.00353 * 359.97438 * 24 22 19 27 27 H 1.48500 * 109.47108 * 89.99960 * 26 24 22 28 28 H 1.48498 * 109.47372 * 210.00044 * 26 24 22 29 29 H 1.48502 * 109.47048 * 330.00329 * 26 24 22 30 30 H 1.09003 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46990 * 300.00482 * 1 2 3 32 32 H 1.09010 * 109.46726 * 60.00321 * 1 2 3 33 33 H 1.08001 * 119.95358 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.91058 * 179.76942 * 5 4 3 35 35 H 1.07997 * 119.95951 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47254 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46828 * 300.00452 * 9 8 7 38 38 H 1.09004 * 109.47185 * 59.99588 * 9 8 7 39 39 H 1.09004 * 109.47205 * 60.00356 * 12 11 10 40 40 H 1.08998 * 109.47325 * 299.99833 * 12 11 10 41 41 H 0.96702 * 113.99557 * 300.00370 * 15 13 12 42 42 H 1.09002 * 109.47398 * 305.00335 * 16 13 12 43 43 H 1.09001 * 109.47194 * 65.00515 * 16 13 12 44 44 H 1.09001 * 109.47121 * 59.99638 * 18 17 16 45 45 H 1.09005 * 109.47342 * 179.97438 * 18 17 16 46 46 H 1.08999 * 109.46894 * 299.99652 * 18 17 16 47 47 H 1.09000 * 109.46758 * 59.99318 * 21 19 17 48 48 H 1.08995 * 109.47011 * 180.02562 * 21 19 17 49 49 H 1.09001 * 109.46845 * 299.99722 * 21 19 17 50 50 H 0.97002 * 119.99458 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3754 0.0053 5 6 1.9187 3.6074 0.0000 6 6 3.2988 3.6852 -0.0053 7 6 4.0604 2.5263 -0.0057 8 8 5.4181 2.6038 -0.0104 9 6 5.9933 3.9119 -0.0151 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1458 0.0005 12 6 4.5374 -0.3944 1.2737 13 6 5.3652 -1.6654 1.0732 14 1 6.2225 -1.4441 0.4374 15 8 4.5573 -2.6670 0.4518 16 6 5.8547 -2.1745 2.4304 17 7 6.7470 -3.3240 2.2293 18 6 7.9807 -2.9189 1.5424 19 6 7.0483 -3.9862 3.5056 20 1 7.5358 -3.2784 4.1759 21 6 5.7481 -4.4802 4.1432 22 6 7.9644 -5.1573 3.2598 23 1 8.2899 -5.3870 2.2561 24 6 8.3861 -5.9362 4.3165 25 7 9.1860 -6.9579 4.1022 26 14 7.8226 -5.5395 6.0527 27 1 6.5612 -6.2677 6.3422 28 1 8.8686 -5.9572 7.0203 29 1 7.5897 -4.0780 6.1757 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2136 2.3189 0.0098 34 1 1.3284 4.5118 0.0003 35 1 3.7846 4.6497 -0.0098 36 1 7.0803 3.8309 -0.0190 37 1 5.6662 4.4493 -0.9052 38 1 5.6720 4.4533 0.8747 39 1 3.6340 -0.6343 1.8346 40 1 5.1246 0.3386 1.8269 41 1 3.7746 -2.9139 0.9632 42 1 6.3963 -1.3795 2.9430 43 1 4.9998 -2.4795 3.0340 44 1 8.5020 -2.1725 2.1417 45 1 8.6235 -3.7888 1.4066 46 1 7.7324 -2.4949 0.5695 47 1 5.2606 -5.1879 3.4727 48 1 5.9716 -4.9711 5.0903 49 1 5.0859 -3.6329 4.3210 50 1 9.4824 -7.5060 4.8455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345875015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:27 Heat of formation + Delta-G solvation = -106.718288 kcal Electronic energy + Delta-G solvation = -30451.864610 eV Core-core repulsion = 26253.867515 eV Total energy + Delta-G solvation = -4197.997094 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99975 -39.27197 -38.60770 -37.43383 -36.56654 -35.66448 -32.64687 -31.04286 -30.28762 -29.92403 -29.32172 -28.13004 -27.04193 -26.47592 -24.48881 -23.78655 -22.55843 -22.19348 -21.09915 -19.49350 -19.05107 -17.57165 -17.34807 -16.82957 -16.76048 -16.55334 -16.03324 -15.81430 -15.75367 -15.19106 -15.10259 -15.06751 -14.43619 -14.31654 -13.83429 -13.69818 -13.30520 -13.04774 -12.98001 -12.77979 -12.60169 -12.45166 -12.36298 -12.17876 -11.88933 -11.83242 -11.64433 -11.38881 -11.06555 -10.98427 -10.94958 -10.72098 -10.54121 -10.16150 -10.07423 -9.91971 -9.65002 -9.41635 -8.96681 -8.53650 -8.50474 -8.48226 -7.27147 -6.03752 -4.01946 0.87723 1.03768 2.55195 3.13313 3.27588 3.35739 3.36725 3.39412 3.65519 4.41601 4.43291 4.58900 4.61087 4.69692 4.77355 4.82821 4.83744 4.84897 4.91010 4.93280 5.14601 5.17982 5.19800 5.21203 5.27166 5.33711 5.49518 5.56419 5.65136 5.76176 5.85397 5.99298 6.03423 6.03948 6.14096 6.32145 6.34134 6.41542 6.51169 6.62785 6.81178 6.84068 6.98409 6.98988 7.30578 7.58505 7.62587 7.97852 8.06139 8.18035 8.69317 9.04170 9.58013 11.09073 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.002540 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.204713 B =11022.459750 C =11855.455662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.149 3.851 4 C -0.237 4.237 5 C -0.047 4.047 6 C -0.237 4.237 7 C 0.148 3.852 8 O -0.300 6.300 9 C 0.025 3.975 10 C 0.032 3.968 11 O -0.298 6.298 12 C 0.037 3.963 13 C 0.119 3.881 14 H 0.105 0.895 15 O -0.535 6.535 16 C 0.021 3.979 17 N -0.514 5.514 18 C 0.033 3.967 19 C 0.181 3.819 20 H -0.004 1.004 21 C -0.146 4.146 22 C -0.504 4.504 23 H 0.085 0.915 24 C 0.069 3.931 25 N -0.899 5.899 26 Si 0.886 3.114 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.270 1.270 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.057 0.943 38 H 0.056 0.944 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.367 0.633 42 H 0.030 0.970 43 H 0.077 0.923 44 H 0.010 0.990 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.027 0.973 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.163 25.122 -7.091 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.102 3.898 4 C -0.256 4.256 5 C -0.065 4.065 6 C -0.256 4.256 7 C 0.101 3.899 8 O -0.212 6.212 9 C -0.070 4.070 10 C -0.014 4.014 11 O -0.214 6.214 12 C -0.039 4.039 13 C 0.059 3.941 14 H 0.123 0.877 15 O -0.339 6.339 16 C -0.109 4.109 17 N -0.238 5.238 18 C -0.115 4.115 19 C 0.074 3.926 20 H 0.013 0.987 21 C -0.203 4.203 22 C -0.542 4.542 23 H 0.103 0.897 24 C -0.132 4.132 25 N -0.538 5.538 26 Si 0.717 3.283 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.196 1.196 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.121 0.879 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.213 0.787 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.028 0.972 45 H 0.104 0.896 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.524 24.196 -7.914 30.350 hybrid contribution -0.657 1.342 2.293 2.736 sum -17.181 25.537 -5.621 31.288 Atomic orbital electron populations 1.23142 0.78207 1.04380 1.01252 1.86230 1.21286 1.25649 1.87788 1.19074 0.90765 0.85148 0.94766 1.21083 1.00219 0.91721 1.12573 1.20710 0.93635 0.97167 0.95024 1.21080 0.94752 0.97164 1.12587 1.19088 0.83155 0.92742 0.94938 1.86208 1.16521 1.30645 1.87872 1.23138 0.99561 0.82947 1.01313 1.17087 0.86647 0.85208 1.12451 1.86264 1.69623 1.37084 1.28451 1.23581 0.98811 0.96595 0.84885 1.21880 0.93054 0.84225 0.94933 0.87686 1.86646 1.39857 1.58390 1.48979 1.22761 0.98823 0.93715 0.95558 1.61832 1.14767 1.23163 1.24076 1.22330 0.92021 1.00482 0.96679 1.19701 0.92977 0.94331 0.85586 0.98695 1.22220 0.98676 0.99588 0.99837 1.21002 1.26731 1.10205 0.96240 0.89741 1.24928 0.94876 0.94788 0.98630 1.69884 1.34474 1.17683 1.31746 0.86881 0.77410 0.78933 0.85060 1.20547 1.22535 1.19565 0.87809 0.92627 0.92516 0.84868 0.85205 0.84882 0.87855 0.92477 0.92564 0.92915 0.92557 0.78691 0.95162 0.90427 0.97166 0.89613 0.93131 0.91829 0.94080 0.95425 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.17 16 2 O -0.30 -3.51 10.28 -34.33 -0.35 -3.86 16 3 C 0.15 1.78 6.70 -39.15 -0.26 1.52 16 4 C -0.24 -2.11 9.04 -39.43 -0.36 -2.46 16 5 C -0.05 -0.37 10.04 -39.59 -0.40 -0.77 16 6 C -0.24 -2.11 9.04 -39.42 -0.36 -2.47 16 7 C 0.15 1.76 6.70 -39.15 -0.26 1.50 16 8 O -0.30 -3.58 10.28 -34.31 -0.35 -3.93 16 9 C 0.03 0.18 9.81 101.05 0.99 1.17 16 10 C 0.03 0.44 5.75 -39.03 -0.22 0.21 16 11 O -0.30 -4.75 9.59 -48.25 -0.46 -5.22 16 12 C 0.04 0.53 5.70 37.16 0.21 0.74 16 13 C 0.12 1.93 3.20 -26.73 -0.09 1.84 16 14 H 0.11 1.82 6.34 -51.93 -0.33 1.49 16 15 O -0.54 -9.30 13.25 -40.08 -0.53 -9.83 16 16 C 0.02 0.36 4.41 -3.82 -0.02 0.34 16 17 N -0.51 -11.05 4.57 -236.28 -1.08 -12.13 16 18 C 0.03 0.68 9.05 60.07 0.54 1.22 16 19 C 0.18 4.40 1.65 -68.86 -0.11 4.28 16 20 H 0.00 -0.11 7.20 -51.93 -0.37 -0.48 16 21 C -0.15 -3.24 8.47 37.16 0.31 -2.93 16 22 C -0.50 -14.32 8.46 -34.44 -0.29 -14.61 16 23 H 0.08 2.61 6.65 -52.49 -0.35 2.27 16 24 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 25 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 26 Si 0.89 22.18 24.37 -169.99 -4.14 18.04 16 27 H -0.28 -6.78 6.87 56.52 0.39 -6.39 16 28 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 29 H -0.27 -6.52 6.53 56.52 0.37 -6.15 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 32 H 0.06 0.32 7.67 -51.92 -0.40 -0.08 16 33 H 0.13 0.84 6.29 -52.49 -0.33 0.51 16 34 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 35 H 0.13 0.84 6.29 -52.49 -0.33 0.51 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 38 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.37 5.17 9.05 45.56 0.41 5.58 16 42 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.08 1.28 5.83 -51.93 -0.30 0.98 16 44 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 1.95 6.10 -51.93 -0.32 1.63 16 46 H 0.05 0.93 6.37 -51.93 -0.33 0.60 16 47 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 49 H 0.03 0.52 6.20 -51.93 -0.32 0.19 16 50 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 393.64 15.07 5.93 5.93 Total: -1.00 -35.34 393.64 -6.52 -41.86 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.90 Total: 3.41 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 0.59 Total: -7.32 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: -0.31 Total: -39.08 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -1.70 Total: -22.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.34 -6.52 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345875015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.860 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds